RNA–Protein interactions for RNA: ENST00000524556.1

CSTF3-204, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 3

Gene CSTF3, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-204ENST00000524556 RGPD2P0DJD1 1756 aa20.84■□□□□ 0.93
CSTF3-204ENST00000524556 DOT1LQ8TEK3 1739 aa20.84■□□□□ 0.93
CSTF3-204ENST00000524556 ANKRD36BQ8N2N9 1353 aa20.84■□□□□ 0.93
CSTF3-204ENST00000524556 SHANK3Q9BYB0 1731 aa20.82■□□□□ 0.92
CSTF3-204ENST00000524556 NSD2O96028 1365 aa20.82■□□□□ 0.92
CSTF3-204ENST00000524556 MAP3K19Q56UN5 1328 aa20.81■□□□□ 0.92
CSTF3-204ENST00000524556 HOXC9P31274 260 aa20.81■□□□□ 0.92
CSTF3-204ENST00000524556 ZCRB1Q8TBF4 217 aaKnown RBP20.81■□□□□ 0.92
CSTF3-204ENST00000524556 COG3Q96JB2 828 aa20.81■□□□□ 0.92
CSTF3-204ENST00000524556 PELP1Q8IZL8 1130 aaKnown RBP20.8■□□□□ 0.92
CSTF3-204ENST00000524556 FBLN1P23142 703 aa20.79■□□□□ 0.92
CSTF3-204ENST00000524556 AMPHP49418 695 aa20.79■□□□□ 0.92
CSTF3-204ENST00000524556 NLGN2Q8NFZ4 835 aa20.79■□□□□ 0.92
CSTF3-204ENST00000524556 CCNL1Q9UK58 526 aaPredicted RBP20.77■□□□□ 0.92
CSTF3-204ENST00000524556 MEGF6O75095 1541 aa20.77■□□□□ 0.92
CSTF3-204ENST00000524556 TESK2Q96S53 571 aa20.76■□□□□ 0.91
CSTF3-204ENST00000524556 GIGYF1O75420 1035 aaPredicted RBP20.75■□□□□ 0.91
CSTF3-204ENST00000524556 COL23A1Q86Y22 540 aaPredicted RBP20.75■□□□□ 0.91
CSTF3-204ENST00000524556 TONSLQ96HA7 1378 aa20.73■□□□□ 0.91
CSTF3-204ENST00000524556 USP47Q96K76 1375 aa20.73■□□□□ 0.91
CSTF3-204ENST00000524556 ST20-MTHFSA0A0A6YYL1 179 aa20.73■□□□□ 0.91
CSTF3-204ENST00000524556 MSH5O43196 834 aa20.73■□□□□ 0.91
CSTF3-204ENST00000524556 GRIN3BO60391 1043 aa20.73■□□□□ 0.91
CSTF3-204ENST00000524556 NBPF6Q5VWK0 638 aa20.73■□□□□ 0.91
CSTF3-204ENST00000524556 NBPF4Q96M43 638 aa20.73■□□□□ 0.91
CSTF3-204ENST00000524556 CGNL1Q0VF96 1302 aa20.73■□□□□ 0.91
CSTF3-204ENST00000524556 CEP350Q5VT06 3117 aa20.73■□□□□ 0.91
CSTF3-204ENST00000524556 RTL1A6NKG5 1358 aa20.72■□□□□ 0.91
CSTF3-204ENST00000524556 YBX3P16989 372 aaKnown RBP eCLIP20.72■□□□□ 0.91
CSTF3-204ENST00000524556 SLC24A1O60721 1099 aa20.71■□□□□ 0.91
CSTF3-204ENST00000524556 RRS1Q15050 365 aaKnown RBP20.71■□□□□ 0.91
CSTF3-204ENST00000524556 USHBP1Q8N6Y0 703 aa20.7■□□□□ 0.9
CSTF3-204ENST00000524556 RAPGEF4Q8WZA2 1011 aa20.7■□□□□ 0.9
CSTF3-204ENST00000524556 C5P01031 1676 aa20.7■□□□□ 0.9
CSTF3-204ENST00000524556 FYB1O15117 783 aa20.68■□□□□ 0.9
CSTF3-204ENST00000524556 MSL1Q68DK7 614 aa20.68■□□□□ 0.9
CSTF3-204ENST00000524556 TAF1LQ8IZX4 1826 aa20.68■□□□□ 0.9
CSTF3-204ENST00000524556 TATP17735 454 aaPredicted RBP20.67■□□□□ 0.9
CSTF3-204ENST00000524556 HMGB2P26583 209 aaKnown RBP20.67■□□□□ 0.9
CSTF3-204ENST00000524556 GGNBP2Q9H3C7 697 aa20.67■□□□□ 0.9
CSTF3-204ENST00000524556 SMG6Q86US8 1419 aaKnown RBP20.67■□□□□ 0.9
CSTF3-204ENST00000524556 CD2APQ9Y5K6 639 aa20.66■□□□□ 0.9
CSTF3-204ENST00000524556 PCDH11XQ9BZA7 1347 aa20.65■□□□□ 0.9
CSTF3-204ENST00000524556 PCDH11YQ9BZA8 1340 aa20.65■□□□□ 0.9
CSTF3-204ENST00000524556 FLAD1Q8NFF5 587 aa20.65■□□□□ 0.9
CSTF3-204ENST00000524556 INSRP06213 1382 aa20.64■□□□□ 0.89
CSTF3-204ENST00000524556 HSP90AB2PQ58FF8 381 aa20.64■□□□□ 0.89
CSTF3-204ENST00000524556 PALLDQ8WX93 1383 aa20.63■□□□□ 0.89
CSTF3-204ENST00000524556 ITGB4P16144 1822 aa20.63■□□□□ 0.89
CSTF3-204ENST00000524556 MPRIPQ6WCQ1 1025 aa20.63■□□□□ 0.89
CSTF3-204ENST00000524556 CYP27B1O15528 508 aa20.61■□□□□ 0.89
CSTF3-204ENST00000524556 KIF20BQ96Q89 1820 aa20.61■□□□□ 0.89
CSTF3-204ENST00000524556 ATP10DQ9P241 1426 aa20.61■□□□□ 0.89
CSTF3-204ENST00000524556 FLT4P35916 1363 aa20.6■□□□□ 0.89
CSTF3-204ENST00000524556 KIF24Q5T7B8 1368 aa20.6■□□□□ 0.89
CSTF3-204ENST00000524556 TMF1P82094 1093 aa20.6■□□□□ 0.89
CSTF3-204ENST00000524556 C4BP0C0L5 1744 aa20.6■□□□□ 0.89
CSTF3-204ENST00000524556 TOGARAM1Q9Y4F4 1720 aa20.6■□□□□ 0.89
CSTF3-204ENST00000524556 SMARCC1Q92922 1105 aaPredicted RBP20.59■□□□□ 0.89
CSTF3-204ENST00000524556 UBR3Q6ZT12 1888 aa20.58■□□□□ 0.89
CSTF3-204ENST00000524556 AK7Q96M32 723 aa20.58■□□□□ 0.89
CSTF3-204ENST00000524556 PKD1L3Q7Z443 1732 aa20.57■□□□□ 0.88
CSTF3-204ENST00000524556 AMIGO3Q86WK7 504 aa20.57■□□□□ 0.88
CSTF3-204ENST00000524556 GPBP1L1Q9HC44 474 aaPredicted RBP20.56■□□□□ 0.88
CSTF3-204ENST00000524556 NKX1-1Q15270 411 aaPredicted RBP20.55■□□□□ 0.88
CSTF3-204ENST00000524556 IFFO2Q5TF58 517 aa20.55■□□□□ 0.88
CSTF3-204ENST00000524556 PIGBQ92521 554 aa20.55■□□□□ 0.88
CSTF3-204ENST00000524556 MAP2P11137 1827 aaKnown RBP20.55■□□□□ 0.88
CSTF3-204ENST00000524556 ADCY9O60503 1353 aa20.54■□□□□ 0.88
CSTF3-204ENST00000524556 NSD3Q9BZ95 1437 aa20.53■□□□□ 0.88
CSTF3-204ENST00000524556 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.53■□□□□ 0.88
CSTF3-204ENST00000524556 PHF14O94880 888 aa20.53■□□□□ 0.88
CSTF3-204ENST00000524556 SMIM5Q71RC9 77 aa20.53■□□□□ 0.88
CSTF3-204ENST00000524556 EMILIN1Q9Y6C2 1016 aa20.53■□□□□ 0.88
CSTF3-204ENST00000524556 NCAPD2Q15021 1401 aa20.53■□□□□ 0.88
CSTF3-204ENST00000524556 CDCA8Q53HL2 280 aa20.52■□□□□ 0.88
CSTF3-204ENST00000524556 CARD14Q9BXL6 1004 aa20.52■□□□□ 0.88
CSTF3-204ENST00000524556 IGSF1Q8N6C5 1336 aa20.52■□□□□ 0.87
CSTF3-204ENST00000524556 LOC102724428A0A0B4J2F2 783 aa20.51■□□□□ 0.87
CSTF3-204ENST00000524556 SSFA2P28290 1259 aa20.51■□□□□ 0.87
CSTF3-204ENST00000524556 SIK1P57059 783 aa20.51■□□□□ 0.87
CSTF3-204ENST00000524556 SPG7Q9UQ90 795 aa20.51■□□□□ 0.87
CSTF3-204ENST00000524556 LINC00116Q8NCU8 138 aa20.5■□□□□ 0.87
CSTF3-204ENST00000524556 ZNF526Q8TF50 670 aaPredicted RBP20.5■□□□□ 0.87
CSTF3-204ENST00000524556 ANKRD26Q9UPS8 1709 aa20.48■□□□□ 0.87
CSTF3-204ENST00000524556 PPM1GO15355 546 aaPredicted RBP20.48■□□□□ 0.87
CSTF3-204ENST00000524556 HSPA6P17066 643 aa20.48■□□□□ 0.87
CSTF3-204ENST00000524556 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.48■□□□□ 0.872e-12■■□□□ 14.3
CSTF3-204ENST00000524556 WWC3Q9ULE0 1092 aa20.48■□□□□ 0.87
CSTF3-204ENST00000524556 EYA1Q99502 592 aa20.47■□□□□ 0.87
CSTF3-204ENST00000524556 TMOD3Q9NYL9 352 aa20.47■□□□□ 0.87
CSTF3-204ENST00000524556 ASAP1Q9ULH1 1129 aa20.47■□□□□ 0.87
CSTF3-204ENST00000524556 WASHC2AQ641Q2 1341 aa20.47■□□□□ 0.87
CSTF3-204ENST00000524556 ITPK1Q13572 414 aa20.46■□□□□ 0.87
CSTF3-204ENST00000524556 GNPATO15228 680 aa20.45■□□□□ 0.86
CSTF3-204ENST00000524556 ATP6V1AP38606 617 aa20.44■□□□□ 0.86
CSTF3-204ENST00000524556 IFNL2Q8IZJ0 200 aa20.44■□□□□ 0.86
CSTF3-204ENST00000524556 PHKG2P15735 406 aa20.43■□□□□ 0.86
CSTF3-204ENST00000524556 ATG3Q9NT62 314 aa20.43■□□□□ 0.86
CSTF3-204ENST00000524556 KIF13BQ9NQT8 1826 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms