RNA–Protein interactions for RNA: ENST00000523427.1

PVT1-219, Transcript of Pvt1 oncogene, humanhuman

TSL 3 BASIC

Gene PVT1, Length 938 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-219ENST00000523427 ANKRD36BQ8N2N9 1353 aa36.44■■■■□ 3.42
PVT1-219ENST00000523427 RRS1Q15050 365 aaKnown RBP36.44■■■■□ 3.42
PVT1-219ENST00000523427 MSH5O43196 834 aa36.43■■■■□ 3.42
PVT1-219ENST00000523427 USHBP1Q8N6Y0 703 aa36.43■■■■□ 3.42
PVT1-219ENST00000523427 MAP3K5Q99683 1374 aa36.42■■■■□ 3.42
PVT1-219ENST00000523427 FAM208AQ9UK61 1670 aaKnown RBP36.42■■■■□ 3.42
PVT1-219ENST00000523427 GGNBP2Q9H3C7 697 aa36.41■■■■□ 3.42
PVT1-219ENST00000523427 NBPF6Q5VWK0 638 aa36.4■■■■□ 3.42
PVT1-219ENST00000523427 NBPF4Q96M43 638 aa36.4■■■■□ 3.42
PVT1-219ENST00000523427 CCNL1Q9UK58 526 aaPredicted RBP36.4■■■■□ 3.42
PVT1-219ENST00000523427 MEGF6O75095 1541 aa36.39■■■■□ 3.42
PVT1-219ENST00000523427 RGPD2P0DJD1 1756 aa36.38■■■■□ 3.41
PVT1-219ENST00000523427 DOT1LQ8TEK3 1739 aa36.38■■■■□ 3.41
PVT1-219ENST00000523427 NSD2O96028 1365 aa36.38■■■■□ 3.41
PVT1-219ENST00000523427 CHD4Q14839 1912 aa36.38■■■■□ 3.41
PVT1-219ENST00000523427 NLGN2Q8NFZ4 835 aa36.35■■■■□ 3.41
PVT1-219ENST00000523427 RAPGEF4Q8WZA2 1011 aa36.34■■■■□ 3.41
PVT1-219ENST00000523427 USP47Q96K76 1375 aa36.33■■■■□ 3.41
PVT1-219ENST00000523427 SENP3-EIF4A1A0A087X0R7 540 aa36.33■■■■□ 3.41
PVT1-219ENST00000523427 FYB1O15117 783 aa36.33■■■■□ 3.41
PVT1-219ENST00000523427 SLC24A1O60721 1099 aa36.32■■■■□ 3.4
PVT1-219ENST00000523427 TUBGCP6Q96RT7 1819 aa36.29■■■■□ 3.4
PVT1-219ENST00000523427 RTL1A6NKG5 1358 aa36.29■■■■□ 3.4
PVT1-219ENST00000523427 TATP17735 454 aaPredicted RBP36.29■■■■□ 3.4
PVT1-219ENST00000523427 C1QTNF8P60827 252 aa36.29■■■■□ 3.4
PVT1-219ENST00000523427 TMF1P82094 1093 aa36.29■■■■□ 3.4
PVT1-219ENST00000523427 MSL1Q68DK7 614 aa36.29■■■■□ 3.4
PVT1-219ENST00000523427 COL23A1Q86Y22 540 aaPredicted RBP36.29■■■■□ 3.4
PVT1-219ENST00000523427 QSER1Q2KHR3 1735 aa36.28■■■■□ 3.4
PVT1-219ENST00000523427 SHANK3Q9BYB0 1731 aa36.28■■■■□ 3.4
PVT1-219ENST00000523427 SMG6Q86US8 1419 aaKnown RBP36.27■■■■□ 3.4
PVT1-219ENST00000523427 HSP90AB2PQ58FF8 381 aa36.27■■■■□ 3.4
PVT1-219ENST00000523427 LY75O60449 1722 aa36.26■■■■□ 3.4
PVT1-219ENST00000523427 CGNL1Q0VF96 1302 aa36.23■■■■□ 3.39
PVT1-219ENST00000523427 MPRIPQ6WCQ1 1025 aa36.22■■■■□ 3.39
PVT1-219ENST00000523427 PCDH11XQ9BZA7 1347 aa36.18■■■■□ 3.38
PVT1-219ENST00000523427 PCDH11YQ9BZA8 1340 aa36.18■■■■□ 3.38
PVT1-219ENST00000523427 YBX3P16989 372 aaKnown RBP eCLIP36.18■■■■□ 3.38
PVT1-219ENST00000523427 COL24A1Q17RW2 1714 aa36.17■■■■□ 3.38
PVT1-219ENST00000523427 GIGYF1O75420 1035 aaPredicted RBP36.17■■■■□ 3.38
PVT1-219ENST00000523427 INSRP06213 1382 aa36.16■■■■□ 3.38
PVT1-219ENST00000523427 FLT4P35916 1363 aa36.15■■■■□ 3.38
PVT1-219ENST00000523427 PALLDQ8WX93 1383 aa36.15■■■■□ 3.38
PVT1-219ENST00000523427 PPM1GO15355 546 aaPredicted RBP36.14■■■■□ 3.38
PVT1-219ENST00000523427 GOLGB1Q14789 3259 aaKnown RBP36.14■■■■□ 3.38
PVT1-219ENST00000523427 CYP27B1O15528 508 aa36.13■■■■□ 3.37
PVT1-219ENST00000523427 GRIN3BO60391 1043 aa36.13■■■■□ 3.37
PVT1-219ENST00000523427 EMILIN1Q9Y6C2 1016 aa36.13■■■■□ 3.37
PVT1-219ENST00000523427 CDCA8Q53HL2 280 aa36.1■■■■□ 3.37
PVT1-219ENST00000523427 SMIM5Q71RC9 77 aa36.09■■■■□ 3.37
PVT1-219ENST00000523427 CARD14Q9BXL6 1004 aa36.09■■■■□ 3.37
PVT1-219ENST00000523427 FLAD1Q8NFF5 587 aa36.08■■■■□ 3.37
PVT1-219ENST00000523427 PHF14O94880 888 aa36.07■■■■□ 3.36
PVT1-219ENST00000523427 AK7Q96M32 723 aa36.07■■■■□ 3.36
PVT1-219ENST00000523427 C5P01031 1676 aa36.06■■■■□ 3.36
PVT1-219ENST00000523427 KIF20BQ96Q89 1820 aa36.06■■■■□ 3.36
PVT1-219ENST00000523427 SMARCC1Q92922 1105 aaPredicted RBP36.05■■■■□ 3.36
PVT1-219ENST00000523427 NSD3Q9BZ95 1437 aa36.03■■■■□ 3.36
PVT1-219ENST00000523427 AMIGO3Q86WK7 504 aa36.03■■■■□ 3.36
PVT1-219ENST00000523427 PIGBQ92521 554 aa36.03■■■■□ 3.36
PVT1-219ENST00000523427 WWC3Q9ULE0 1092 aa36.03■■■■□ 3.36
PVT1-219ENST00000523427 KIF24Q5T7B8 1368 aa36.02■■■■□ 3.36
PVT1-219ENST00000523427 HMGB2P26583 209 aaKnown RBP36.02■■■■□ 3.36
PVT1-219ENST00000523427 CD2APQ9Y5K6 639 aa36.02■■■■□ 3.36
PVT1-219ENST00000523427 SPG7Q9UQ90 795 aa36■■■■□ 3.35
PVT1-219ENST00000523427 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP35.97■■■■□ 3.35
PVT1-219ENST00000523427 POLR3GLQ9BT43 218 aa35.97■■■■□ 3.35
PVT1-219ENST00000523427 TOGARAM1Q9Y4F4 1720 aa35.97■■■■□ 3.35
PVT1-219ENST00000523427 TAF1LQ8IZX4 1826 aa35.96■■■■□ 3.35
PVT1-219ENST00000523427 C4BP0C0L5 1744 aa35.95■■■■□ 3.35
PVT1-219ENST00000523427 ITGB4P16144 1822 aa35.94■■■■□ 3.34
PVT1-219ENST00000523427 EYA1Q99502 592 aa35.94■■■■□ 3.34
PVT1-219ENST00000523427 TMOD3Q9NYL9 352 aa35.94■■■■□ 3.34
PVT1-219ENST00000523427 ATP10DQ9P241 1426 aa35.93■■■■□ 3.34
PVT1-219ENST00000523427 LOC102724428A0A0B4J2F2 783 aa35.93■■■■□ 3.34
PVT1-219ENST00000523427 SIK1P57059 783 aa35.93■■■■□ 3.34
PVT1-219ENST00000523427 LINC00116Q8NCU8 138 aa35.93■■■■□ 3.34
PVT1-219ENST00000523427 ZNF526Q8TF50 670 aaPredicted RBP35.93■■■■□ 3.34
PVT1-219ENST00000523427 NKX1-1Q15270 411 aaPredicted RBP35.92■■■■□ 3.34
PVT1-219ENST00000523427 ASAP1Q9ULH1 1129 aa35.91■■■■□ 3.34
PVT1-219ENST00000523427 WASHC2AQ641Q2 1341 aa35.9■■■■□ 3.34
PVT1-219ENST00000523427 TNNT2P45379 298 aaPredicted RBP35.9■■■■□ 3.34
PVT1-219ENST00000523427 PKD1L3Q7Z443 1732 aa35.88■■■■□ 3.34
PVT1-219ENST00000523427 IGSF1Q8N6C5 1336 aa35.88■■■■□ 3.33
PVT1-219ENST00000523427 GNPATO15228 680 aa35.88■■■■□ 3.33
PVT1-219ENST00000523427 GPBP1L1Q9HC44 474 aaPredicted RBP35.88■■■■□ 3.33
PVT1-219ENST00000523427 ATP6V1AP38606 617 aa35.87■■■■□ 3.33
PVT1-219ENST00000523427 SSFA2P28290 1259 aa35.86■■■■□ 3.33
PVT1-219ENST00000523427 ITPK1Q13572 414 aa35.86■■■■□ 3.33
PVT1-219ENST00000523427 IFNL2Q8IZJ0 200 aa35.86■■■■□ 3.33
PVT1-219ENST00000523427 POLKQ9UBT6 870 aa35.86■■■■□ 3.33
PVT1-219ENST00000523427 NCAPD2Q15021 1401 aa35.84■■■■□ 3.33
PVT1-219ENST00000523427 PHKG2P15735 406 aa35.84■■■■□ 3.33
PVT1-219ENST00000523427 TRIM26Q12899 539 aaPredicted RBP35.84■■■■□ 3.33
PVT1-219ENST00000523427 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP35.83■■■■□ 3.331e-6■□□□□ 11.1
PVT1-219ENST00000523427 UBR3Q6ZT12 1888 aa35.83■■■■□ 3.33
PVT1-219ENST00000523427 ATG3Q9NT62 314 aa35.81■■■■□ 3.32
PVT1-219ENST00000523427 MAP2P11137 1827 aaKnown RBP35.8■■■■□ 3.32
PVT1-219ENST00000523427 EIF4A2Q14240 407 aaKnown RBP35.79■■■■□ 3.32
PVT1-219ENST00000523427 MMP10P09238 476 aa35.76■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms