RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 ZBTB24O43167 697 aaPredicted RBP12.44□□□□□ -0.42
LSM1-202ENST00000520286 SCNN1AP37088 669 aa12.43□□□□□ -0.42
LSM1-202ENST00000520286 RAB15P59190 212 aa12.43□□□□□ -0.42
LSM1-202ENST00000520286 PRIMPOLQ96LW4 560 aa12.43□□□□□ -0.42
LSM1-202ENST00000520286 KCTD15Q96SI1 283 aaPredicted RBP12.42□□□□□ -0.42
LSM1-202ENST00000520286 CXXC1Q9P0U4 656 aaPredicted RBP12.42□□□□□ -0.42
LSM1-202ENST00000520286 OCLNQ16625 522 aa12.41□□□□□ -0.42
LSM1-202ENST00000520286 MYCP01106 439 aaPredicted RBP12.4□□□□□ -0.42
LSM1-202ENST00000520286 TRIM32Q13049 653 aa12.4□□□□□ -0.42
LSM1-202ENST00000520286 HINFPQ9BQA5 517 aa12.4□□□□□ -0.42
LSM1-202ENST00000520286 VARSP26640 1264 aaKnown RBP12.39□□□□□ -0.43
LSM1-202ENST00000520286 TAS1R3Q7RTX0 852 aa12.39□□□□□ -0.43
LSM1-202ENST00000520286 E9PSI1 815 aa12.38□□□□□ -0.43
LSM1-202ENST00000520286 RNF223E7ERA6 249 aa12.37□□□□□ -0.43
LSM1-202ENST00000520286 LGR5O75473 907 aa12.37□□□□□ -0.43
LSM1-202ENST00000520286 KCNC4Q03721 635 aa12.37□□□□□ -0.43
LSM1-202ENST00000520286 VASH1Q7L8A9 365 aaPredicted RBP12.37□□□□□ -0.43
LSM1-202ENST00000520286 BIN2Q9UBW5 565 aaPredicted RBP12.37□□□□□ -0.43
LSM1-202ENST00000520286 MAP4K5Q9Y4K4 846 aa12.37□□□□□ -0.43
LSM1-202ENST00000520286 WNT7BP56706 349 aa12.36□□□□□ -0.43
LSM1-202ENST00000520286 INTS6LQ5JSJ4 861 aaKnown RBP12.36□□□□□ -0.43
LSM1-202ENST00000520286 ANKLE1Q8NAG6 615 aa12.36□□□□□ -0.43
LSM1-202ENST00000520286 M0R2N6 131 aa12.35□□□□□ -0.43
LSM1-202ENST00000520286 ERVH48-1M5A8F1 160 aa12.35□□□□□ -0.43
LSM1-202ENST00000520286 ABL1P00519 1130 aa12.35□□□□□ -0.43
LSM1-202ENST00000520286 SCTRP47872 440 aa12.35□□□□□ -0.43
LSM1-202ENST00000520286 SKOR1P84550 965 aa12.35□□□□□ -0.43
LSM1-202ENST00000520286 PLA2G2CQ5R387 149 aa12.35□□□□□ -0.43
LSM1-202ENST00000520286 CDAN1Q8IWY9 1227 aa12.35□□□□□ -0.43
LSM1-202ENST00000520286 TSEN2Q8NCE0 465 aaKnown RBP12.35□□□□□ -0.43
LSM1-202ENST00000520286 ESF1Q9H501 851 aaKnown RBP12.35□□□□□ -0.43
LSM1-202ENST00000520286 ERCC3P19447 782 aa12.34□□□□□ -0.43
LSM1-202ENST00000520286 GGCXP38435 758 aa12.34□□□□□ -0.43
LSM1-202ENST00000520286 DNAJC14Q6Y2X3 702 aaPredicted RBP12.34□□□□□ -0.43
LSM1-202ENST00000520286 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.34□□□□□ -0.43
LSM1-202ENST00000520286 EGFL7Q9UHF1 273 aa12.34□□□□□ -0.43
LSM1-202ENST00000520286 ITGBL1O95965 494 aaPredicted RBP12.32□□□□□ -0.44
LSM1-202ENST00000520286 WEE1P30291 646 aa12.32□□□□□ -0.44
LSM1-202ENST00000520286 MARSP56192 900 aaKnown RBP12.32□□□□□ -0.44
LSM1-202ENST00000520286 ZNF358Q9NW07 568 aa12.32□□□□□ -0.44
LSM1-202ENST00000520286 ERVK-9P63128 1117 aa12.31□□□□□ -0.44
LSM1-202ENST00000520286 ZNF211Q13398 564 aaPredicted RBP12.31□□□□□ -0.44
LSM1-202ENST00000520286 ARID5BQ14865 1188 aa12.31□□□□□ -0.44
LSM1-202ENST00000520286 CC2D2BQ6DHV5 1058 aa12.31□□□□□ -0.44
LSM1-202ENST00000520286 EHBP1Q8NDI1 1231 aa12.31□□□□□ -0.44
LSM1-202ENST00000520286 MKNK1Q9BUB5 465 aa12.3□□□□□ -0.44
LSM1-202ENST00000520286 ANO2Q9NQ90 1003 aa12.3□□□□□ -0.44
LSM1-202ENST00000520286 H3BRB1 525 aa12.29□□□□□ -0.44
LSM1-202ENST00000520286 RPIAP49247 311 aa12.29□□□□□ -0.44
LSM1-202ENST00000520286 FKBP5Q13451 457 aaPredicted RBP12.29□□□□□ -0.44
LSM1-202ENST00000520286 TUT1Q9H6E5 874 aaKnown RBP12.29□□□□□ -0.44
LSM1-202ENST00000520286 SEPT3Q9UH03 358 aa12.29□□□□□ -0.44
LSM1-202ENST00000520286 RBM47A0AV96 593 aaKnown RBP12.28□□□□□ -0.44
LSM1-202ENST00000520286 TMEM229AB2RXF0 380 aa12.28□□□□□ -0.44
LSM1-202ENST00000520286 ICMTO60725 284 aa12.28□□□□□ -0.44
LSM1-202ENST00000520286 GLYCTKQ8IVS8 523 aa12.28□□□□□ -0.44
LSM1-202ENST00000520286 GTF3C2Q8WUA4 911 aaPredicted RBP12.28□□□□□ -0.44
LSM1-202ENST00000520286 TRIM52Q96A61 297 aa12.28□□□□□ -0.44
LSM1-202ENST00000520286 CDK15Q96Q40 435 aa12.28□□□□□ -0.44
LSM1-202ENST00000520286 HCSTQ9UBK5 93 aa12.28□□□□□ -0.44
LSM1-202ENST00000520286 FSHRP23945 695 aa12.27□□□□□ -0.45
LSM1-202ENST00000520286 NOM1Q5C9Z4 860 aaKnown RBP12.27□□□□□ -0.45
LSM1-202ENST00000520286 RC3H1Q5TC82 1133 aaKnown RBP12.27□□□□□ -0.45
LSM1-202ENST00000520286 OSBPL3Q9H4L5 887 aa12.27□□□□□ -0.45
LSM1-202ENST00000520286 CYLDQ9NQC7 956 aa12.27□□□□□ -0.45
LSM1-202ENST00000520286 TMPRSS4Q9NRS4 437 aa12.27□□□□□ -0.45
LSM1-202ENST00000520286 PTCD1O75127 700 aaKnown RBP12.26□□□□□ -0.45
LSM1-202ENST00000520286 CD2BP2O95400 341 aaKnown RBP12.26□□□□□ -0.45
LSM1-202ENST00000520286 DHX9Q08211 1270 aaKnown RBP12.26□□□□□ -0.45
LSM1-202ENST00000520286 PURBQ96QR8 312 aaKnown RBP12.26□□□□□ -0.45
LSM1-202ENST00000520286 BACH1O14867 736 aa12.25□□□□□ -0.45
LSM1-202ENST00000520286 SCNN1DP51172 638 aa12.25□□□□□ -0.45
LSM1-202ENST00000520286 GDF10P55107 478 aa12.25□□□□□ -0.45
LSM1-202ENST00000520286 PPP1R18Q6NYC8 613 aa12.25□□□□□ -0.45
LSM1-202ENST00000520286 POTEGQ6S5H5 508 aa12.25□□□□□ -0.45
LSM1-202ENST00000520286 CAPN12Q6ZSI9 719 aa12.25□□□□□ -0.45
LSM1-202ENST00000520286 DNMT3AQ9Y6K1 912 aaPredicted RBP12.25□□□□□ -0.45
LSM1-202ENST00000520286 UNCXA6NJT0 531 aa12.24□□□□□ -0.45
LSM1-202ENST00000520286 C21orf2O43822 256 aa12.24□□□□□ -0.45
LSM1-202ENST00000520286 STAU1O95793 577 aaKnown RBP12.24□□□□□ -0.45
LSM1-202ENST00000520286 IGFBP4P22692 258 aa12.24□□□□□ -0.45
LSM1-202ENST00000520286 GRM5P41594 1212 aa12.24□□□□□ -0.45
LSM1-202ENST00000520286 GAS2L2Q8NHY3 880 aa12.24□□□□□ -0.45
LSM1-202ENST00000520286 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.24□□□□□ -0.45
LSM1-202ENST00000520286 WASLO00401 505 aaPredicted RBP12.23□□□□□ -0.45
LSM1-202ENST00000520286 FKBP4Q02790 459 aaKnown RBP eCLIP12.23□□□□□ -0.45
LSM1-202ENST00000520286 TNS4Q8IZW8 715 aa12.23□□□□□ -0.45
LSM1-202ENST00000520286 ZNF784Q8NCA9 323 aaPredicted RBP12.23□□□□□ -0.45
LSM1-202ENST00000520286 COL26A1Q96A83 441 aa12.23□□□□□ -0.45
LSM1-202ENST00000520286 TLL2Q9Y6L7 1015 aa12.23□□□□□ -0.45
LSM1-202ENST00000520286 FOXO3O43524 673 aa12.22□□□□□ -0.45
LSM1-202ENST00000520286 SF3B2Q13435 895 aaKnown RBP12.22□□□□□ -0.45
LSM1-202ENST00000520286 SCG3Q8WXD2 468 aaKnown RBP12.22□□□□□ -0.45
LSM1-202ENST00000520286 ANKRD33BA6NCL7 494 aa12.21□□□□□ -0.45
LSM1-202ENST00000520286 INHAP05111 366 aa12.21□□□□□ -0.45
LSM1-202ENST00000520286 MPNDQ8N594 471 aa12.21□□□□□ -0.45
LSM1-202ENST00000520286 BCL2L13Q9BXK5 485 aa12.21□□□□□ -0.45
LSM1-202ENST00000520286 ETNK1Q9HBU6 452 aa12.21□□□□□ -0.45
LSM1-202ENST00000520286 SERTAD1Q9UHV2 236 aa12.21□□□□□ -0.45
LSM1-202ENST00000520286 MYT1Q01538 1121 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms