RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MEGF6O75095 1541 aa19.15■□□□□ 0.66
NUP54-216ENST00000514901 SPG7Q9UQ90 795 aa19.15■□□□□ 0.66
NUP54-216ENST00000514901 BCL9O00512 1426 aa19.15■□□□□ 0.66
NUP54-216ENST00000514901 SF3B2Q13435 895 aaKnown RBP19.14■□□□□ 0.65
NUP54-216ENST00000514901 SULT6B1Q6IMI4 303 aa19.14■□□□□ 0.65
NUP54-216ENST00000514901 DDX54Q8TDD1 881 aaKnown RBP19.14■□□□□ 0.65
NUP54-216ENST00000514901 PRKRIP1Q9H875 184 aaPredicted RBP19.14■□□□□ 0.65
NUP54-216ENST00000514901 MYBBP1AQ9BQG0 1328 aaKnown RBP19.14■□□□□ 0.65
NUP54-216ENST00000514901 COL3A1P02461 1466 aaPredicted RBP19.12■□□□□ 0.65
NUP54-216ENST00000514901 KDRP35968 1356 aa19.12■□□□□ 0.65
NUP54-216ENST00000514901 AMOTQ4VCS5 1084 aa19.12■□□□□ 0.65
NUP54-216ENST00000514901 PCDH11XQ9BZA7 1347 aa19.11■□□□□ 0.65
NUP54-216ENST00000514901 PCDH11YQ9BZA8 1340 aa19.11■□□□□ 0.65
NUP54-216ENST00000514901 U2SURPO15042 1029 aaKnown RBP19.11■□□□□ 0.65
NUP54-216ENST00000514901 PLEKHO1Q53GL0 409 aaPredicted RBP19.11■□□□□ 0.65
NUP54-216ENST00000514901 AEBP1Q8IUX7 1158 aa19.1■□□□□ 0.65
NUP54-216ENST00000514901 RGPD1P0DJD0 1748 aa19.1■□□□□ 0.65
NUP54-216ENST00000514901 TRIM37O94972 964 aa19.09■□□□□ 0.65
NUP54-216ENST00000514901 KAT6BQ8WYB5 2073 aa19.09■□□□□ 0.65
NUP54-216ENST00000514901 HMOX1P09601 288 aa19.08■□□□□ 0.64
NUP54-216ENST00000514901 BCL11BQ9C0K0 894 aaPredicted RBP19.08■□□□□ 0.64
NUP54-216ENST00000514901 ANP32CO43423 234 aa19.07■□□□□ 0.64
NUP54-216ENST00000514901 IFNL2Q8IZJ0 200 aa19.07■□□□□ 0.64
NUP54-216ENST00000514901 CYP27B1O15528 508 aa19.06■□□□□ 0.64
NUP54-216ENST00000514901 U2AF1L5P0DN76 240 aaPredicted RBP19.06■□□□□ 0.64
NUP54-216ENST00000514901 BAG6P46379 1132 aa19.06■□□□□ 0.64
NUP54-216ENST00000514901 U2AF1Q01081 240 aaKnown RBP eCLIP19.06■□□□□ 0.64
NUP54-216ENST00000514901 FCHSD2O94868 740 aa19.05■□□□□ 0.64
NUP54-216ENST00000514901 NKX1-1Q15270 411 aaPredicted RBP19.05■□□□□ 0.64
NUP54-216ENST00000514901 APBA3O96018 575 aa19.04■□□□□ 0.64
NUP54-216ENST00000514901 HSP90AB1P08238 724 aaKnown RBP19.04■□□□□ 0.64
NUP54-216ENST00000514901 PKD1L3Q7Z443 1732 aa19.04■□□□□ 0.64
NUP54-216ENST00000514901 PHKG2P15735 406 aa19.03■□□□□ 0.64
NUP54-216ENST00000514901 ZNF530Q6P9A1 599 aaPredicted RBP19.03■□□□□ 0.64
NUP54-216ENST00000514901 PNNQ9H307 717 aaKnown RBP19.03■□□□□ 0.64
NUP54-216ENST00000514901 SBF2Q86WG5 1849 aa19.02■□□□□ 0.64
NUP54-216ENST00000514901 C1orf141Q5JVX7 400 aa19.02■□□□□ 0.64
NUP54-216ENST00000514901 ACSBG1Q96GR2 724 aa19.02■□□□□ 0.64
NUP54-216ENST00000514901 RSPH6AQ9H0K4 717 aa19.02■□□□□ 0.64
NUP54-216ENST00000514901 SHANK3Q9BYB0 1731 aa19.02■□□□□ 0.63
NUP54-216ENST00000514901 PLSCR1O15162 318 aa19■□□□□ 0.63
NUP54-216ENST00000514901 KCNQ2O43526 872 aa19■□□□□ 0.63
NUP54-216ENST00000514901 PRIM1P49642 420 aaKnown RBP19■□□□□ 0.63
NUP54-216ENST00000514901 DEFB132Q7Z7B7 95 aa19■□□□□ 0.63
NUP54-216ENST00000514901 NEFMP07197 916 aa18.99■□□□□ 0.63
NUP54-216ENST00000514901 PRKAR2BP31323 418 aa18.99■□□□□ 0.63
NUP54-216ENST00000514901 AKAP4Q5JQC9 854 aa18.99■□□□□ 0.63
NUP54-216ENST00000514901 GAS2L2Q8NHY3 880 aa18.99■□□□□ 0.63
NUP54-216ENST00000514901 DCAF5Q96JK2 942 aa18.99■□□□□ 0.63
NUP54-216ENST00000514901 MTHFSDQ2M296 383 aaKnown RBP18.98■□□□□ 0.63
NUP54-216ENST00000514901 SYTL4Q96C24 671 aaPredicted RBP18.98■□□□□ 0.63
NUP54-216ENST00000514901 ERVV-2B6SEH9 535 aa18.97■□□□□ 0.63
NUP54-216ENST00000514901 EN1Q05925 392 aaPredicted RBP18.97■□□□□ 0.63
NUP54-216ENST00000514901 PTF1AQ7RTS3 328 aa18.97■□□□□ 0.63
NUP54-216ENST00000514901 CAMKK2Q96RR4 588 aa18.97■□□□□ 0.63
NUP54-216ENST00000514901 NHSQ6T4R5 1651 aa18.96■□□□□ 0.63
NUP54-216ENST00000514901 WDR43Q15061 677 aaKnown RBP eCLIP18.96■□□□□ 0.63
NUP54-216ENST00000514901 TNS1Q9HBL0 1735 aaKnown RBP18.96■□□□□ 0.63
NUP54-216ENST00000514901 PHACTR3Q96KR7 559 aa18.95■□□□□ 0.62
NUP54-216ENST00000514901 MPRIPQ6WCQ1 1025 aa18.94■□□□□ 0.62
NUP54-216ENST00000514901 EZH2Q15910 746 aaKnown RBP18.93■□□□□ 0.62
NUP54-216ENST00000514901 TMOD3Q9NYL9 352 aa18.93■□□□□ 0.62
NUP54-216ENST00000514901 GNAT3A8MTJ3 354 aa18.92■□□□□ 0.62
NUP54-216ENST00000514901 PLEKHF1Q96S99 279 aa18.92■□□□□ 0.62
NUP54-216ENST00000514901 CABP4P57796 275 aa18.91■□□□□ 0.62
NUP54-216ENST00000514901 PIGBQ92521 554 aa18.91■□□□□ 0.62
NUP54-216ENST00000514901 SMARCC1Q92922 1105 aaPredicted RBP18.91■□□□□ 0.62
NUP54-216ENST00000514901 MAPK8IP3Q9UPT6 1336 aa18.91■□□□□ 0.62
NUP54-216ENST00000514901 DOT1LQ8TEK3 1739 aa18.91■□□□□ 0.62
NUP54-216ENST00000514901 RNMTO43148 476 aaKnown RBP18.9■□□□□ 0.62
NUP54-216ENST00000514901 HMGB2P26583 209 aaKnown RBP18.9■□□□□ 0.62
NUP54-216ENST00000514901 BTAF1O14981 1849 aa18.89■□□□□ 0.61
NUP54-216ENST00000514901 HTATSF1O43719 755 aaKnown RBP18.89■□□□□ 0.61
NUP54-216ENST00000514901 MRS2Q9HD23 443 aa18.89■□□□□ 0.61
NUP54-216ENST00000514901 ADAMTS8Q9UP79 889 aa18.89■□□□□ 0.61
NUP54-216ENST00000514901 MAP3K5Q99683 1374 aa18.89■□□□□ 0.61
NUP54-216ENST00000514901 KDM6AO15550 1401 aaPredicted RBP18.89■□□□□ 0.61
NUP54-216ENST00000514901 RGPD3A6NKT7 1758 aaPredicted RBP18.88■□□□□ 0.61
NUP54-216ENST00000514901 RGPD4Q7Z3J3 1758 aa18.88■□□□□ 0.61
NUP54-216ENST00000514901 TXNRD1Q16881 649 aa18.88■□□□□ 0.61
NUP54-216ENST00000514901 SLC27A3Q5K4L6 730 aa18.88■□□□□ 0.61
NUP54-216ENST00000514901 RTF1Q92541 710 aaKnown RBP18.88■□□□□ 0.61
NUP54-216ENST00000514901 LGR6Q9HBX8 967 aa18.88■□□□□ 0.61
NUP54-216ENST00000514901 ITGB4P16144 1822 aa18.87■□□□□ 0.61
NUP54-216ENST00000514901 NFE2L2Q16236 605 aa18.87■□□□□ 0.61
NUP54-216ENST00000514901 PROM2Q8N271 834 aa18.87■□□□□ 0.61
NUP54-216ENST00000514901 RUNDC1Q96C34 613 aa18.87■□□□□ 0.61
NUP54-216ENST00000514901 TOGARAM1Q9Y4F4 1720 aa18.86■□□□□ 0.61
NUP54-216ENST00000514901 NBPF14Q5TI25 921 aa18.86■□□□□ 0.61
NUP54-216ENST00000514901 NFATC2IPQ8NCF5 419 aa18.86■□□□□ 0.61
NUP54-216ENST00000514901 SLC52A2Q9HAB3 445 aa18.86■□□□□ 0.61
NUP54-216ENST00000514901 CCDC184Q52MB2 194 aa18.85■□□□□ 0.61
NUP54-216ENST00000514901 DIEXFQ68CQ4 756 aaKnown RBP18.85■□□□□ 0.61
NUP54-216ENST00000514901 IL17REQ8NFR9 667 aa18.85■□□□□ 0.61
NUP54-216ENST00000514901 PNISRQ8TF01 805 aaKnown RBP18.85■□□□□ 0.61
NUP54-216ENST00000514901 SCN11AQ9UI33 1791 aa18.84■□□□□ 0.61
NUP54-216ENST00000514901 ATG3Q9NT62 314 aa18.84■□□□□ 0.61
NUP54-216ENST00000514901 PALLDQ8WX93 1383 aa18.83■□□□□ 0.61
NUP54-216ENST00000514901 TEFQ10587 303 aa18.83■□□□□ 0.6
NUP54-216ENST00000514901 ASAP1Q9ULH1 1129 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms