RNA–Protein interactions for RNA: ENST00000513868.6

PVT1-203, Transcript of Pvt1 oncogene, humanhuman

TSL 1 (best) BASIC

Gene PVT1, Length 1,699 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-203ENST00000513868 ERBB3P21860 1342 aa16.6■□□□□ 0.25
PVT1-203ENST00000513868 BCL2L13Q9BXK5 485 aa16.59■□□□□ 0.25
PVT1-203ENST00000513868 CHL1O00533 1208 aa16.59■□□□□ 0.25
PVT1-203ENST00000513868 HTATSF1O43719 755 aaKnown RBP16.59■□□□□ 0.25
PVT1-203ENST00000513868 PDE3AQ14432 1141 aa16.59■□□□□ 0.25
PVT1-203ENST00000513868 SSH1Q8WYL5 1049 aa16.59■□□□□ 0.25
PVT1-203ENST00000513868 CCDC136Q96JN2 1154 aa16.59■□□□□ 0.25
PVT1-203ENST00000513868 KIAA0232Q92628 1395 aa16.58■□□□□ 0.24
PVT1-203ENST00000513868 TSPYL6Q8N831 410 aa16.58■□□□□ 0.24
PVT1-203ENST00000513868 GNAT3A8MTJ3 354 aa16.57■□□□□ 0.24
PVT1-203ENST00000513868 VAMP4O75379 141 aa16.57■□□□□ 0.24
PVT1-203ENST00000513868 MAP3K5Q99683 1374 aa16.57■□□□□ 0.24
PVT1-203ENST00000513868 FRAT1Q92837 279 aaPredicted RBP16.56■□□□□ 0.24
PVT1-203ENST00000513868 AHDC1Q5TGY3 1603 aaPredicted RBP16.56■□□□□ 0.24
PVT1-203ENST00000513868 CHRNA2Q15822 529 aa16.56■□□□□ 0.24
PVT1-203ENST00000513868 C8orf58Q8NAV2 365 aa16.56■□□□□ 0.24
PVT1-203ENST00000513868 RTF1Q92541 710 aaKnown RBP16.56■□□□□ 0.24
PVT1-203ENST00000513868 TNNQ9UQP3 1299 aa16.56■□□□□ 0.24
PVT1-203ENST00000513868 ALDH1L2Q3SY69 923 aa16.55■□□□□ 0.24
PVT1-203ENST00000513868 IL17REQ8NFR9 667 aa16.55■□□□□ 0.24
PVT1-203ENST00000513868 ZNF428Q96B54 188 aa16.55■□□□□ 0.24
PVT1-203ENST00000513868 SMC4Q9NTJ3 1288 aa16.55■□□□□ 0.24
PVT1-203ENST00000513868 BRPF1P55201 1214 aaPredicted RBP16.54■□□□□ 0.24
PVT1-203ENST00000513868 PANK1Q8TE04 598 aa16.54■□□□□ 0.24
PVT1-203ENST00000513868 ADAMTS7Q9UKP4 1686 aa16.54■□□□□ 0.24
PVT1-203ENST00000513868 RLBP1P12271 317 aa16.53■□□□□ 0.24
PVT1-203ENST00000513868 TWISTNBQ3B726 338 aaPredicted RBP16.53■□□□□ 0.24
PVT1-203ENST00000513868 PELP1Q8IZL8 1130 aaKnown RBP16.53■□□□□ 0.24
PVT1-203ENST00000513868 SIPA1L3O60292 1781 aaPredicted RBP16.53■□□□□ 0.24
PVT1-203ENST00000513868 COL22A1Q8NFW1 1626 aaPredicted RBP16.53■□□□□ 0.24
PVT1-203ENST00000513868 CANXP27824 592 aaKnown RBP16.53■□□□□ 0.24
PVT1-203ENST00000513868 CEMIPQ8WUJ3 1361 aa16.52■□□□□ 0.24
PVT1-203ENST00000513868 KDM3BQ7LBC6 1761 aa16.52■□□□□ 0.24
PVT1-203ENST00000513868 ELL2O00472 640 aaPredicted RBP16.52■□□□□ 0.23
PVT1-203ENST00000513868 ZKSCAN2Q63HK3 967 aa16.52■□□□□ 0.23
PVT1-203ENST00000513868 MIS18AQ9NYP9 233 aa16.52■□□□□ 0.23
PVT1-203ENST00000513868 PKD1L3Q7Z443 1732 aa16.51■□□□□ 0.23
PVT1-203ENST00000513868 PLEKHO1Q53GL0 409 aaPredicted RBP16.51■□□□□ 0.23
PVT1-203ENST00000513868 SCN11AQ9UI33 1791 aa16.51■□□□□ 0.23
PVT1-203ENST00000513868 CACNA1FO60840 1977 aa16.51■□□□□ 0.23
PVT1-203ENST00000513868 KRT24Q2M2I5 525 aa16.5■□□□□ 0.23
PVT1-203ENST00000513868 AMOTQ4VCS5 1084 aa16.5■□□□□ 0.23
PVT1-203ENST00000513868 NOB1Q9ULX3 412 aaKnown RBP16.5■□□□□ 0.23
PVT1-203ENST00000513868 COG6Q9Y2V7 657 aa16.5■□□□□ 0.23
PVT1-203ENST00000513868 TRIM27P14373 513 aa16.5■□□□□ 0.23
PVT1-203ENST00000513868 MRPL50Q8N5N7 158 aaKnown RBP16.5■□□□□ 0.23
PVT1-203ENST00000513868 NLRP2Q9NX02 1062 aa16.5■□□□□ 0.23
PVT1-203ENST00000513868 PHLPP1O60346 1717 aa16.49■□□□□ 0.23
PVT1-203ENST00000513868 MEGF6O75095 1541 aa16.49■□□□□ 0.23
PVT1-203ENST00000513868 COL5A2P05997 1499 aaPredicted RBP16.49■□□□□ 0.23
PVT1-203ENST00000513868 AKAP4Q5JQC9 854 aa16.49■□□□□ 0.23
PVT1-203ENST00000513868 ZNF530Q6P9A1 599 aaPredicted RBP16.49■□□□□ 0.23
PVT1-203ENST00000513868 PRDM11Q9NQV5 511 aa16.49■□□□□ 0.23
PVT1-203ENST00000513868 KIF16BQ96L93 1317 aa16.48■□□□□ 0.23
PVT1-203ENST00000513868 ATF7IPQ6VMQ6 1270 aa16.48■□□□□ 0.23
PVT1-203ENST00000513868 CLUAP1Q96AJ1 413 aa16.48■□□□□ 0.23
PVT1-203ENST00000513868 LGR6Q9HBX8 967 aa16.48■□□□□ 0.23
PVT1-203ENST00000513868 TSPYL4Q9UJ04 414 aa16.48■□□□□ 0.23
PVT1-203ENST00000513868 COL16A1Q07092 1604 aaPredicted RBP16.48■□□□□ 0.23
PVT1-203ENST00000513868 TAF7Q15545 349 aaPredicted RBP16.47■□□□□ 0.23
PVT1-203ENST00000513868 DZIP1LQ8IYY4 767 aaKnown RBP16.47■□□□□ 0.23
PVT1-203ENST00000513868 BABAM1Q9NWV8 329 aa16.47■□□□□ 0.23
PVT1-203ENST00000513868 PARP4Q9UKK3 1724 aaKnown RBP16.47■□□□□ 0.23
PVT1-203ENST00000513868 CSB-PGBD3P0DP91 1061 aa16.46■□□□□ 0.23
PVT1-203ENST00000513868 OVOS2A0A0G2JMS6 1433 aa16.46■□□□□ 0.23
PVT1-203ENST00000513868 PLEKHG2Q9H7P9 1386 aa16.46■□□□□ 0.23
PVT1-203ENST00000513868 WDR17Q8IZU2 1322 aa16.46■□□□□ 0.23
PVT1-203ENST00000513868 KDM2BQ8NHM5 1336 aa16.46■□□□□ 0.23
PVT1-203ENST00000513868 TCERG1O14776 1098 aaKnown RBP16.45■□□□□ 0.22
PVT1-203ENST00000513868 IPO8O15397 1037 aaKnown RBP16.45■□□□□ 0.22
PVT1-203ENST00000513868 MS4A1P11836 297 aa16.45■□□□□ 0.22
PVT1-203ENST00000513868 HAP1P54257 671 aaPredicted RBP16.45■□□□□ 0.22
PVT1-203ENST00000513868 MVPQ14764 893 aaKnown RBP16.45■□□□□ 0.22
PVT1-203ENST00000513868 COL14A1Q05707 1796 aaKnown RBP16.45■□□□□ 0.22
PVT1-203ENST00000513868 MPRIPQ6WCQ1 1025 aa16.44■□□□□ 0.22
PVT1-203ENST00000513868 RAPGEF4Q8WZA2 1011 aa16.44■□□□□ 0.22
PVT1-203ENST00000513868 ARHGAP45Q92619 1136 aa16.44■□□□□ 0.22
PVT1-203ENST00000513868 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.44■□□□□ 0.228e-7■■□□□ 14.5
PVT1-203ENST00000513868 SHANK3Q9BYB0 1731 aa16.44■□□□□ 0.22
PVT1-203ENST00000513868 RNMTO43148 476 aaKnown RBP16.43■□□□□ 0.22
PVT1-203ENST00000513868 C1orf141Q5JVX7 400 aa16.43■□□□□ 0.22
PVT1-203ENST00000513868 TATP17735 454 aaPredicted RBP16.43■□□□□ 0.22
PVT1-203ENST00000513868 AAMPQ13685 434 aa16.43■□□□□ 0.22
PVT1-203ENST00000513868 FTSJ3Q8IY81 847 aaKnown RBP16.43■□□□□ 0.22
PVT1-203ENST00000513868 TMEM57Q8N5G2 664 aa16.41■□□□□ 0.22
PVT1-203ENST00000513868 TSHZ2Q9NRE2 1034 aa16.41■□□□□ 0.22
PVT1-203ENST00000513868 KDM6AO15550 1401 aaPredicted RBP16.41■□□□□ 0.22
PVT1-203ENST00000513868 SPG7Q9UQ90 795 aa16.4■□□□□ 0.22
PVT1-203ENST00000513868 PHKG2P15735 406 aa16.4■□□□□ 0.22
PVT1-203ENST00000513868 CARD10Q9BWT7 1032 aa16.4■□□□□ 0.22
PVT1-203ENST00000513868 RGS12O14924 1447 aa16.39■□□□□ 0.21
PVT1-203ENST00000513868 ABCC4O15439 1325 aa16.39■□□□□ 0.21
PVT1-203ENST00000513868 TEFQ10587 303 aa16.39■□□□□ 0.21
PVT1-203ENST00000513868 TOM1L2Q6ZVM7 507 aa16.39■□□□□ 0.21
PVT1-203ENST00000513868 CENPQQ7L2Z9 268 aaPredicted RBP16.39■□□□□ 0.21
PVT1-203ENST00000513868 PCDHB15Q9Y5E8 787 aa16.39■□□□□ 0.21
PVT1-203ENST00000513868 PLCH1Q4KWH8 1693 aa16.39■□□□□ 0.21
PVT1-203ENST00000513868 SOS1Q07889 1333 aaPredicted RBP16.39■□□□□ 0.21
PVT1-203ENST00000513868 CYP27B1O15528 508 aa16.38■□□□□ 0.21
PVT1-203ENST00000513868 KCNQ3O43525 872 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms