RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PRKAR2BP31323 418 aa19.91■□□□□ 0.78
NUP54-213ENST00000513352 DDB1Q16531 1140 aa19.91■□□□□ 0.78
NUP54-213ENST00000513352 KDRP35968 1356 aa19.91■□□□□ 0.78
NUP54-213ENST00000513352 CCER2I3L3R5 266 aa19.9■□□□□ 0.78
NUP54-213ENST00000513352 EXOC5O00471 708 aa19.9■□□□□ 0.78
NUP54-213ENST00000513352 TNS2Q63HR2 1409 aa19.9■□□□□ 0.78
NUP54-213ENST00000513352 ONECUT3O60422 494 aaPredicted RBP19.89■□□□□ 0.77
NUP54-213ENST00000513352 NEFMP07197 916 aa19.89■□□□□ 0.77
NUP54-213ENST00000513352 PDE3BQ13370 1112 aa19.89■□□□□ 0.77
NUP54-213ENST00000513352 ZCRB1Q8TBF4 217 aaKnown RBP19.89■□□□□ 0.77
NUP54-213ENST00000513352 RSPH6AQ9H0K4 717 aa19.89■□□□□ 0.77
NUP54-213ENST00000513352 FCHSD2O94868 740 aa19.88■□□□□ 0.77
NUP54-213ENST00000513352 FAM9BQ8IZU0 186 aa19.88■□□□□ 0.77
NUP54-213ENST00000513352 ADAMTS8Q9UP79 889 aa19.88■□□□□ 0.77
NUP54-213ENST00000513352 SPG7Q9UQ90 795 aa19.88■□□□□ 0.77
NUP54-213ENST00000513352 PKD1L3Q7Z443 1732 aa19.88■□□□□ 0.77
NUP54-213ENST00000513352 PLEKHO1Q53GL0 409 aaPredicted RBP19.87■□□□□ 0.77
NUP54-213ENST00000513352 DDX54Q8TDD1 881 aaKnown RBP19.87■□□□□ 0.77
NUP54-213ENST00000513352 PNNQ9H307 717 aaKnown RBP19.87■□□□□ 0.77
NUP54-213ENST00000513352 MAPK8IP3Q9UPT6 1336 aa19.86■□□□□ 0.77
NUP54-213ENST00000513352 CCDC146Q8IYE0 955 aa19.86■□□□□ 0.77
NUP54-213ENST00000513352 SHANK3Q9BYB0 1731 aa19.85■□□□□ 0.77
NUP54-213ENST00000513352 PCDH11XQ9BZA7 1347 aa19.85■□□□□ 0.77
NUP54-213ENST00000513352 PCDH11YQ9BZA8 1340 aa19.85■□□□□ 0.77
NUP54-213ENST00000513352 AMOTQ4VCS5 1084 aa19.85■□□□□ 0.77
NUP54-213ENST00000513352 ZNF530Q6P9A1 599 aaPredicted RBP19.85■□□□□ 0.77
NUP54-213ENST00000513352 KRT27Q7Z3Y8 459 aa19.85■□□□□ 0.77
NUP54-213ENST00000513352 PNISRQ8TF01 805 aaKnown RBP19.85■□□□□ 0.77
NUP54-213ENST00000513352 C1orf141Q5JVX7 400 aa19.83■□□□□ 0.77
NUP54-213ENST00000513352 FAM182BQ5T319 152 aa19.83■□□□□ 0.77
NUP54-213ENST00000513352 KAT6BQ8WYB5 2073 aa19.83■□□□□ 0.76
NUP54-213ENST00000513352 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.82■□□□□ 0.76
NUP54-213ENST00000513352 PLEKHG2Q9H7P9 1386 aa19.82■□□□□ 0.76
NUP54-213ENST00000513352 MTHFSDQ2M296 383 aaKnown RBP19.81■□□□□ 0.76
NUP54-213ENST00000513352 PHACTR3Q96KR7 559 aa19.81■□□□□ 0.76
NUP54-213ENST00000513352 MARCH10Q8NA82 808 aaPredicted RBP19.8■□□□□ 0.76
NUP54-213ENST00000513352 GAS2L2Q8NHY3 880 aa19.8■□□□□ 0.76
NUP54-213ENST00000513352 RUNDC1Q96C34 613 aa19.8■□□□□ 0.76
NUP54-213ENST00000513352 PLEKHF1Q96S99 279 aa19.8■□□□□ 0.76
NUP54-213ENST00000513352 CYP27B1O15528 508 aa19.79■□□□□ 0.76
NUP54-213ENST00000513352 IFNL2Q8IZJ0 200 aa19.79■□□□□ 0.76
NUP54-213ENST00000513352 PHKG2P15735 406 aa19.78■□□□□ 0.76
NUP54-213ENST00000513352 AKAP4Q5JQC9 854 aa19.76■□□□□ 0.75
NUP54-213ENST00000513352 DLG5Q8TDM6 1919 aa19.76■□□□□ 0.75
NUP54-213ENST00000513352 MAP3K5Q99683 1374 aa19.75■□□□□ 0.75
NUP54-213ENST00000513352 SENP3-EIF4A1A0A087X0R7 540 aa19.75■□□□□ 0.75
NUP54-213ENST00000513352 HSP90AB1P08238 724 aaKnown RBP19.75■□□□□ 0.75
NUP54-213ENST00000513352 NEUROD2Q15784 382 aa19.75■□□□□ 0.75
NUP54-213ENST00000513352 NFE2L2Q16236 605 aa19.75■□□□□ 0.75
NUP54-213ENST00000513352 RRP7AQ9Y3A4 280 aaKnown RBP19.75■□□□□ 0.75
NUP54-213ENST00000513352 DOT1LQ8TEK3 1739 aa19.75■□□□□ 0.75
NUP54-213ENST00000513352 VIRMAQ69YN4 1812 aaKnown RBP19.74■□□□□ 0.75
NUP54-213ENST00000513352 FAM196AQ6ZSG2 479 aa19.74■□□□□ 0.75
NUP54-213ENST00000513352 ILDR2Q71H61 639 aa19.74■□□□□ 0.75
NUP54-213ENST00000513352 ACSBG1Q96GR2 724 aa19.74■□□□□ 0.75
NUP54-213ENST00000513352 GNAT3A8MTJ3 354 aa19.73■□□□□ 0.75
NUP54-213ENST00000513352 APAF1O14727 1248 aa19.73■□□□□ 0.75
NUP54-213ENST00000513352 MPRIPQ6WCQ1 1025 aa19.73■□□□□ 0.75
NUP54-213ENST00000513352 RTF1Q92541 710 aaKnown RBP19.73■□□□□ 0.75
NUP54-213ENST00000513352 TMPOP42166 694 aaKnown RBP19.72■□□□□ 0.75
NUP54-213ENST00000513352 SYTL4Q96C24 671 aaPredicted RBP19.72■□□□□ 0.75
NUP54-213ENST00000513352 RIPK4P57078 832 aa19.71■□□□□ 0.75
NUP54-213ENST00000513352 DCAF5Q96JK2 942 aa19.71■□□□□ 0.75
NUP54-213ENST00000513352 SBF2Q86WG5 1849 aa19.71■□□□□ 0.75
NUP54-213ENST00000513352 TOGARAM1Q9Y4F4 1720 aa19.71■□□□□ 0.75
NUP54-213ENST00000513352 SCN11AQ9UI33 1791 aa19.7■□□□□ 0.74
NUP54-213ENST00000513352 KDM6AO15550 1401 aaPredicted RBP19.69■□□□□ 0.74
NUP54-213ENST00000513352 RNMTO43148 476 aaKnown RBP19.69■□□□□ 0.74
NUP54-213ENST00000513352 NKX1-1Q15270 411 aaPredicted RBP19.69■□□□□ 0.74
NUP54-213ENST00000513352 ITGB4P16144 1822 aa19.68■□□□□ 0.74
NUP54-213ENST00000513352 TRIM37O94972 964 aa19.68■□□□□ 0.74
NUP54-213ENST00000513352 PRIM1P49642 420 aaKnown RBP19.68■□□□□ 0.74
NUP54-213ENST00000513352 LMOD3Q0VAK6 560 aa19.68■□□□□ 0.74
NUP54-213ENST00000513352 MCM10Q7L590 875 aa19.68■□□□□ 0.74
NUP54-213ENST00000513352 LGR6Q9HBX8 967 aa19.68■□□□□ 0.74
NUP54-213ENST00000513352 SALL2Q9Y467 1007 aaPredicted RBP19.68■□□□□ 0.74
NUP54-213ENST00000513352 NHSQ6T4R5 1651 aa19.68■□□□□ 0.74
NUP54-213ENST00000513352 CABP4P57796 275 aa19.67■□□□□ 0.74
NUP54-213ENST00000513352 DCTN1Q14203 1278 aa19.67■□□□□ 0.74
NUP54-213ENST00000513352 BCL9O00512 1426 aa19.67■□□□□ 0.74
NUP54-213ENST00000513352 KCNQ2O43526 872 aa19.66■□□□□ 0.74
NUP54-213ENST00000513352 TMOD3Q9NYL9 352 aa19.66■□□□□ 0.74
NUP54-213ENST00000513352 HTATSF1O43719 755 aaKnown RBP19.65■□□□□ 0.74
NUP54-213ENST00000513352 TEFQ10587 303 aa19.65■□□□□ 0.74
NUP54-213ENST00000513352 ERVV-2B6SEH9 535 aa19.64■□□□□ 0.73
NUP54-213ENST00000513352 SF3B2Q13435 895 aaKnown RBP19.64■□□□□ 0.73
NUP54-213ENST00000513352 IL17REQ8NFR9 667 aa19.64■□□□□ 0.73
NUP54-213ENST00000513352 THUMPD2Q9BTF0 503 aaKnown RBP19.64■□□□□ 0.73
NUP54-213ENST00000513352 ADAMTS7Q9UKP4 1686 aa19.64■□□□□ 0.73
NUP54-213ENST00000513352 EP400Q96L91 3159 aa19.64■□□□□ 0.73
NUP54-213ENST00000513352 BTAF1O14981 1849 aa19.63■□□□□ 0.73
NUP54-213ENST00000513352 PTF1AQ7RTS3 328 aa19.62■□□□□ 0.73
NUP54-213ENST00000513352 BCL11BQ9C0K0 894 aaPredicted RBP19.62■□□□□ 0.73
NUP54-213ENST00000513352 SLC52A2Q9HAB3 445 aa19.62■□□□□ 0.73
NUP54-213ENST00000513352 NFATC2IPQ8NCF5 419 aa19.61■□□□□ 0.73
NUP54-213ENST00000513352 TRIM35Q9UPQ4 493 aa19.61■□□□□ 0.73
NUP54-213ENST00000513352 TNS1Q9HBL0 1735 aaKnown RBP19.61■□□□□ 0.73
NUP54-213ENST00000513352 MRC1P22897 1456 aa19.6■□□□□ 0.73
NUP54-213ENST00000513352 CEMIPQ8WUJ3 1361 aa19.6■□□□□ 0.73
NUP54-213ENST00000513352 PIGBQ92521 554 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms