RNA–Protein interactions for RNA: ENST00000509162.1

TOPBP1-207, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-207ENST00000509162 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.11□□□□□ -0.791e-6■□□□□ 9.3
TOPBP1-207ENST00000509162 OTUD5Q96G74 571 aa10.11□□□□□ -0.79
TOPBP1-207ENST00000509162 FBLN1P23142 703 aa10.1□□□□□ -0.79
TOPBP1-207ENST00000509162 IER5LQ5T953 404 aa10.1□□□□□ -0.79
TOPBP1-207ENST00000509162 UNC5CLQ8IV45 518 aa10.1□□□□□ -0.79
TOPBP1-207ENST00000509162 DISP2A7MBM2 1401 aa10.09□□□□□ -0.79
TOPBP1-207ENST00000509162 NLRP6P59044 892 aa10.09□□□□□ -0.79
TOPBP1-207ENST00000509162 ARHGEF25Q86VW2 580 aa10.09□□□□□ -0.79
TOPBP1-207ENST00000509162 TMEM106CQ9BVX2 250 aa10.09□□□□□ -0.79
TOPBP1-207ENST00000509162 BTG4Q9NY30 223 aa10.09□□□□□ -0.79
TOPBP1-207ENST00000509162 AXIN2Q9Y2T1 843 aa10.09□□□□□ -0.79
TOPBP1-207ENST00000509162 PARP4Q9UKK3 1724 aaKnown RBP10.09□□□□□ -0.79
TOPBP1-207ENST00000509162 AATKQ6ZMQ8 1374 aa10.09□□□□□ -0.79
TOPBP1-207ENST00000509162 CCDC7Q96M83 1385 aa10.09□□□□□ -0.79
TOPBP1-207ENST00000509162 RGPD2P0DJD1 1756 aa10.09□□□□□ -0.79
TOPBP1-207ENST00000509162 WASHC2AQ641Q2 1341 aa10.08□□□□□ -0.8
TOPBP1-207ENST00000509162 SOX12O15370 315 aa10.08□□□□□ -0.8
TOPBP1-207ENST00000509162 VPS72Q15906 364 aa10.08□□□□□ -0.8
TOPBP1-207ENST00000509162 ZNF467Q7Z7K2 595 aaPredicted RBP10.08□□□□□ -0.8
TOPBP1-207ENST00000509162 QTRT2Q9H974 415 aaKnown RBP10.08□□□□□ -0.8
TOPBP1-207ENST00000509162 PRDM11Q9NQV5 511 aa10.08□□□□□ -0.8
TOPBP1-207ENST00000509162 TRPC5Q9UL62 973 aaPredicted RBP10.08□□□□□ -0.8
TOPBP1-207ENST00000509162 TRIM35Q9UPQ4 493 aa10.08□□□□□ -0.8
TOPBP1-207ENST00000509162 SPATA31A5Q5VU36 1347 aa10.07□□□□□ -0.8
TOPBP1-207ENST00000509162 SPATA31A7Q8IWB4 1347 aa10.07□□□□□ -0.8
TOPBP1-207ENST00000509162 SHANK3Q9BYB0 1731 aa10.07□□□□□ -0.8
TOPBP1-207ENST00000509162 SOCS7O14512 581 aa10.07□□□□□ -0.8
TOPBP1-207ENST00000509162 FYB1O15117 783 aa10.07□□□□□ -0.8
TOPBP1-207ENST00000509162 RBM6P78332 1123 aaKnown RBP10.07□□□□□ -0.8
TOPBP1-207ENST00000509162 HDGFL2Q7Z4V5 671 aaPredicted RBP10.07□□□□□ -0.8
TOPBP1-207ENST00000509162 NLRP13Q86W25 1043 aa10.07□□□□□ -0.8
TOPBP1-207ENST00000509162 GJD4Q96KN9 370 aaPredicted RBP10.07□□□□□ -0.8
TOPBP1-207ENST00000509162 RXRBP28702 533 aa10.06□□□□□ -0.8
TOPBP1-207ENST00000509162 LARP1Q6PKG0 1096 aaKnown RBP10.06□□□□□ -0.8
TOPBP1-207ENST00000509162 MAMSTRQ6ZN01 415 aa10.06□□□□□ -0.8
TOPBP1-207ENST00000509162 HS6ST3Q8IZP7 471 aa10.06□□□□□ -0.8
TOPBP1-207ENST00000509162 GGNBP2Q9H3C7 697 aa10.06□□□□□ -0.8
TOPBP1-207ENST00000509162 TERF2IPQ9NYB0 399 aa10.06□□□□□ -0.8
TOPBP1-207ENST00000509162 TNS1Q9HBL0 1735 aaKnown RBP10.06□□□□□ -0.8
TOPBP1-207ENST00000509162 SMG6Q86US8 1419 aaKnown RBP10.06□□□□□ -0.8
TOPBP1-207ENST00000509162 SPATA31A1Q5TZJ5 1347 aa10.06□□□□□ -0.8
TOPBP1-207ENST00000509162 POTEFA5A3E0 1075 aa10.05□□□□□ -0.8
TOPBP1-207ENST00000509162 MAP3K19Q56UN5 1328 aa10.05□□□□□ -0.8
TOPBP1-207ENST00000509162 TPRNQ4KMQ1 711 aa10.04□□□□□ -0.8
TOPBP1-207ENST00000509162 CIZ1Q9ULV3 898 aaPredicted RBP10.04□□□□□ -0.8
TOPBP1-207ENST00000509162 PCDHB8Q9UN66 801 aa10.04□□□□□ -0.8
TOPBP1-207ENST00000509162 CRB1P82279 1406 aa10.04□□□□□ -0.8
TOPBP1-207ENST00000509162 ZBTB7CA1YPR0 619 aa10.03□□□□□ -0.8
TOPBP1-207ENST00000509162 NCAPD2Q15021 1401 aa10.03□□□□□ -0.8
TOPBP1-207ENST00000509162 POLR3GLQ9BT43 218 aa10.03□□□□□ -0.8
TOPBP1-207ENST00000509162 PANK3Q9H999 370 aa10.03□□□□□ -0.8
TOPBP1-207ENST00000509162 ERBB3P21860 1342 aa10.03□□□□□ -0.8
TOPBP1-207ENST00000509162 MEGF6O75095 1541 aa10.02□□□□□ -0.8
TOPBP1-207ENST00000509162 RTL1A6NKG5 1358 aa10.02□□□□□ -0.8
TOPBP1-207ENST00000509162 BLMP54132 1417 aaPredicted RBP10.02□□□□□ -0.81
TOPBP1-207ENST00000509162 ONECUT3O60422 494 aaPredicted RBP10.02□□□□□ -0.81
TOPBP1-207ENST00000509162 SEC24BO95487 1268 aa10.02□□□□□ -0.81
TOPBP1-207ENST00000509162 RRS1Q15050 365 aaKnown RBP10.02□□□□□ -0.81
TOPBP1-207ENST00000509162 FAM98CQ17RN3 349 aaKnown RBP10.02□□□□□ -0.81
TOPBP1-207ENST00000509162 CDCA8Q53HL2 280 aa10.02□□□□□ -0.81
TOPBP1-207ENST00000509162 STRN4Q9NRL3 753 aa10.02□□□□□ -0.81
TOPBP1-207ENST00000509162 WDR17Q8IZU2 1322 aa10.02□□□□□ -0.81
TOPBP1-207ENST00000509162 RGPD1P0DJD0 1748 aa10.02□□□□□ -0.81
TOPBP1-207ENST00000509162 POTEJP0CG39 1038 aa10.01□□□□□ -0.81
TOPBP1-207ENST00000509162 RNF25Q96BH1 459 aaPredicted RBP10.01□□□□□ -0.81
TOPBP1-207ENST00000509162 EMILIN1Q9Y6C2 1016 aa10.01□□□□□ -0.81
TOPBP1-207ENST00000509162 COL3A1P02461 1466 aaPredicted RBP10.01□□□□□ -0.81
TOPBP1-207ENST00000509162 TNS2Q63HR2 1409 aa10□□□□□ -0.81
TOPBP1-207ENST00000509162 PER1O15534 1290 aaPredicted RBP10□□□□□ -0.81
TOPBP1-207ENST00000509162 HOXC9P31274 260 aa10□□□□□ -0.81
TOPBP1-207ENST00000509162 SEPT12Q8IYM1 358 aa10□□□□□ -0.81
TOPBP1-207ENST00000509162 KCNH5Q8NCM2 988 aa10□□□□□ -0.81
TOPBP1-207ENST00000509162 UPF1Q92900 1129 aaKnown RBP eCLIP10□□□□□ -0.81
TOPBP1-207ENST00000509162 COLQQ9Y215 455 aaPredicted RBP10□□□□□ -0.81
TOPBP1-207ENST00000509162 MAP2P11137 1827 aaKnown RBP9.99□□□□□ -0.81
TOPBP1-207ENST00000509162 FAM182BQ5T319 152 aa9.99□□□□□ -0.81
TOPBP1-207ENST00000509162 COG3Q96JB2 828 aa9.99□□□□□ -0.81
TOPBP1-207ENST00000509162 SCUBE2Q9NQ36 999 aa9.99□□□□□ -0.81
TOPBP1-207ENST00000509162 NSD2O96028 1365 aa9.99□□□□□ -0.81
TOPBP1-207ENST00000509162 PKD1L3Q7Z443 1732 aa9.99□□□□□ -0.81
TOPBP1-207ENST00000509162 BARGINQ6ZT62 677 aa9.98□□□□□ -0.81
TOPBP1-207ENST00000509162 ANKRD24Q8TF21 1146 aa9.98□□□□□ -0.81
TOPBP1-207ENST00000509162 TOGARAM1Q9Y4F4 1720 aa9.98□□□□□ -0.81
TOPBP1-207ENST00000509162 SBF2Q86WG5 1849 aa9.98□□□□□ -0.81
TOPBP1-207ENST00000509162 IP6K1Q92551 441 aa9.97□□□□□ -0.81
TOPBP1-207ENST00000509162 USP35Q9P2H5 1018 aa9.97□□□□□ -0.81
TOPBP1-207ENST00000509162 CCDC9Q9Y3X0 531 aaKnown RBP9.97□□□□□ -0.81
TOPBP1-207ENST00000509162 CGNL1Q0VF96 1302 aa9.97□□□□□ -0.81
TOPBP1-207ENST00000509162 INSRP06213 1382 aa9.97□□□□□ -0.81
TOPBP1-207ENST00000509162 FLT4P35916 1363 aa9.97□□□□□ -0.81
TOPBP1-207ENST00000509162 RREB1Q92766 1687 aa9.96□□□□□ -0.81
TOPBP1-207ENST00000509162 IRX5P78411 483 aaPredicted RBP9.96□□□□□ -0.82
TOPBP1-207ENST00000509162 HSP90AB2PQ58FF8 381 aa9.96□□□□□ -0.82
TOPBP1-207ENST00000509162 TCP11L2Q8N4U5 519 aa9.96□□□□□ -0.82
TOPBP1-207ENST00000509162 NHSQ6T4R5 1651 aa9.96□□□□□ -0.82
TOPBP1-207ENST00000509162 PLCG2P16885 1265 aa9.95□□□□□ -0.82
TOPBP1-207ENST00000509162 CARD10Q9BWT7 1032 aa9.95□□□□□ -0.82
TOPBP1-207ENST00000509162 POLKQ9UBT6 870 aa9.95□□□□□ -0.82
TOPBP1-207ENST00000509162 KIF24Q5T7B8 1368 aa9.95□□□□□ -0.82
TOPBP1-207ENST00000509162 OVOS2A0A0G2JMS6 1433 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms