RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 CCDC61Q9Y6R9 512 aa20.18■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 TWISTNBQ3B726 338 aaPredicted RBP20.17■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 GCC1Q96CN9 775 aa20.17■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 MSH6P52701 1360 aa20.17■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 BMP2KLQ5H9B9 411 aa20.17■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 FMN2Q9NZ56 1722 aa20.17■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 CHMP4BQ9H444 224 aaKnown RBP20.16■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 FAM83GA6ND36 823 aa20.15■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 ANKRD45Q5TZF3 282 aa20.15■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 FOXO3O43524 673 aa20.15■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 LMOD3Q0VAK6 560 aa20.15■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 CHMP5Q9NZZ3 219 aa20.15■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 NRKQ7Z2Y5 1582 aa20.15■□□□□ 0.82
MSH5-SAPCD1-208ENST00000498473 ZNF692Q9BU19 519 aaPredicted RBP20.14■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 NCOA3Q9Y6Q9 1424 aa20.14■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 MCM4P33991 863 aa20.14■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 PIP4K2BP78356 416 aa20.14■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 ACEP12821 1306 aa20.13■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 DCTN1Q14203 1278 aa20.12■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 NUTM2GQ5VZR2 741 aa20.12■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 NGDNQ8NEJ9 315 aaKnown RBP20.12■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 SNX21Q969T3 373 aa20.12■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 DDIT3P35638 169 aa20.11■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 HSCBQ8IWL3 235 aa20.11■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 API5Q9BZZ5 524 aaKnown RBP20.11■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 MST1RQ04912 1400 aa20.1■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 KIF2CQ99661 725 aa20.1■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 SLAIN2Q9P270 581 aa20.1■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 C1orf167Q5SNV9 1468 aa20.1■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 AEBP1Q8IUX7 1158 aa20.09■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 PHF8Q9UPP1 1060 aa20.09■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 KIF24Q5T7B8 1368 aa20.09■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 EIF4A2Q14240 407 aaKnown RBP20.08■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 CADPS2Q86UW7 1296 aa20.08■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 TOPAZ1Q8N9V7 1692 aa20.08■□□□□ 0.81
MSH5-SAPCD1-208ENST00000498473 SOX12O15370 315 aa20.07■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 TBC1D9Q6ZT07 1266 aa20.07■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 LMOD2Q6P5Q4 547 aa20.06■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 TTC21BQ7Z4L5 1316 aa20.06■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 BRINP3Q76B58 766 aa20.06■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 PEAK1Q9H792 1746 aa20.05■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 OVOS2A0A0J9YW53 1432 aa20.05■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 RGS12O14924 1447 aa20.05■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 OVOS2Q6IE36 1432 aa20.05■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 INTS3Q68E01 1043 aaKnown RBP20.05■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 SULT6B1Q6IMI4 303 aa20.05■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 RGPD1P0DJD0 1748 aa20.05■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 GLIPR1L2Q4G1C9 344 aa20.04■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 UBAP1LF5GYI3 381 aa20.04■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 CHL1O00533 1208 aa20.04■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 KRT24Q2M2I5 525 aa20.04■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 L1TD1Q5T7N2 865 aaKnown RBP20.03■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 DCTPP1Q9H773 170 aa20.03■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 PSME1Q06323 249 aa20.03■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 FSD2A1L4K1 749 aa20.02■□□□□ 0.8
MSH5-SAPCD1-208ENST00000498473 PLEKHG3A1L390 1219 aa20.02■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 TRAK2O60296 914 aa20.02■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 CD2BP2O95400 341 aaKnown RBP20.02■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 GSPT1P15170 499 aaKnown RBP20.02■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 PLEKHM2Q8IWE5 1019 aa20.02■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 CERKQ8TCT0 537 aa20.02■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 ATP10DQ9P241 1426 aa20.01■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 KIAA0232Q92628 1395 aa20.01■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 MCM10Q7L590 875 aa20■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 USP6P35125 1406 aa20■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 ANKARQ7Z5J8 1434 aa20■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 HSP90AB2PQ58FF8 381 aa20■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 CDC45O75419 566 aa19.99■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 FAM43AQ8N2R8 423 aa19.99■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 ANKRD44Q8N8A2 993 aa19.99■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 USP31Q70CQ4 1352 aa19.99■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 DCCP43146 1447 aa19.99■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 HSP90AB1P08238 724 aaKnown RBP19.98■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 RBM42Q9BTD8 480 aaKnown RBP19.98■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 GZF1Q9H116 711 aaPredicted RBP19.98■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 CIZ1Q9ULV3 898 aaPredicted RBP19.98■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 CRB1P82279 1406 aa19.98■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 XRCC6P12956 609 aaKnown RBP eCLIP19.98■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 SSH2Q76I76 1423 aa19.98■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 ROBO1Q9Y6N7 1651 aa19.97■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 C16orf71Q8IYS4 520 aaPredicted RBP19.97■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 TNPO1Q92973 898 aaKnown RBP19.97■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 GOLGA6L3A6NEY3 463 aa19.96■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 KRT28Q7Z3Y7 464 aa19.96■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 DDX11L8A8MPP1 907 aa19.96■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 RAB3GAP1Q15042 981 aa19.96■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 TTC22Q5TAA0 569 aa19.96■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 CEP85Q6P2H3 762 aa19.96■□□□□ 0.79
MSH5-SAPCD1-208ENST00000498473 HAP1P54257 671 aaPredicted RBP19.95■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 RPAP2Q8IXW5 612 aaPredicted RBP19.95■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 CABLES1Q8TDN4 633 aa19.95■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 PODXL2Q9NZ53 605 aa19.95■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 RTL1A6NKG5 1358 aa19.95■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 K7ELQ4 463 aaPredicted RBP19.95■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 ABTB2Q8N961 1025 aa19.95■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 PTPRCP08575 1304 aa19.94■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 OTUD7AQ8TE49 926 aaPredicted RBP19.93■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 ZBTB7CA1YPR0 619 aa19.92■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 MEIS3Q99687 375 aa19.92■□□□□ 0.78
MSH5-SAPCD1-208ENST00000498473 MAP3K19Q56UN5 1328 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms