RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 CASZ1Q86V15 1759 aa21.64■■□□□ 1.06
HDAC4-213ENST00000496347 PANK3Q9H999 370 aa21.64■■□□□ 1.05
HDAC4-213ENST00000496347 RAPGEF4Q8WZA2 1011 aa21.63■■□□□ 1.05
HDAC4-213ENST00000496347 WASHC2AQ641Q2 1341 aa21.62■■□□□ 1.05
HDAC4-213ENST00000496347 KCNQ2O43526 872 aa21.62■■□□□ 1.05
HDAC4-213ENST00000496347 ZCRB1Q8TBF4 217 aaKnown RBP21.61■■□□□ 1.05
HDAC4-213ENST00000496347 KIF7Q2M1P5 1343 aa21.6■■□□□ 1.05
HDAC4-213ENST00000496347 USHBP1Q8N6Y0 703 aa21.6■■□□□ 1.05
HDAC4-213ENST00000496347 DDX54Q8TDD1 881 aaKnown RBP21.6■■□□□ 1.05
HDAC4-213ENST00000496347 ACSBG1Q96GR2 724 aa21.6■■□□□ 1.05
HDAC4-213ENST00000496347 LY75O60449 1722 aa21.6■■□□□ 1.05
HDAC4-213ENST00000496347 PLEKHG2Q9H7P9 1386 aa21.6■■□□□ 1.05
HDAC4-213ENST00000496347 PCDH11XQ9BZA7 1347 aa21.59■■□□□ 1.05
HDAC4-213ENST00000496347 PCDH11YQ9BZA8 1340 aa21.59■■□□□ 1.05
HDAC4-213ENST00000496347 PPM1GO15355 546 aaPredicted RBP21.59■■□□□ 1.05
HDAC4-213ENST00000496347 TXNRD1Q16881 649 aa21.59■■□□□ 1.05
HDAC4-213ENST00000496347 TATP17735 454 aaPredicted RBP21.58■■□□□ 1.05
HDAC4-213ENST00000496347 PROM2Q8N271 834 aa21.58■■□□□ 1.05
HDAC4-213ENST00000496347 ANO8Q9HCE9 1232 aaPredicted RBP21.58■■□□□ 1.05
HDAC4-213ENST00000496347 POLKQ9UBT6 870 aa21.58■■□□□ 1.05
HDAC4-213ENST00000496347 QSER1Q2KHR3 1735 aa21.56■■□□□ 1.04
HDAC4-213ENST00000496347 TOGARAM1Q9Y4F4 1720 aa21.56■■□□□ 1.04
HDAC4-213ENST00000496347 KNSTRNQ9Y448 316 aa21.55■■□□□ 1.04
HDAC4-213ENST00000496347 TNNT2P45379 298 aaPredicted RBP21.53■■□□□ 1.04
HDAC4-213ENST00000496347 STK32BQ9NY57 414 aa21.53■■□□□ 1.04
HDAC4-213ENST00000496347 ITGB4P16144 1822 aa21.52■■□□□ 1.04
HDAC4-213ENST00000496347 SLC27A3Q5K4L6 730 aa21.51■■□□□ 1.03
HDAC4-213ENST00000496347 SYTL4Q96C24 671 aaPredicted RBP21.51■■□□□ 1.03
HDAC4-213ENST00000496347 PRIM1P49642 420 aaKnown RBP21.5■■□□□ 1.03
HDAC4-213ENST00000496347 EIF4A2Q14240 407 aaKnown RBP21.5■■□□□ 1.03
HDAC4-213ENST00000496347 AMER1Q5JTC6 1135 aaPredicted RBP21.5■■□□□ 1.03
HDAC4-213ENST00000496347 MORC1Q86VD1 984 aa21.5■■□□□ 1.03
HDAC4-213ENST00000496347 EYA1Q99502 592 aa21.5■■□□□ 1.03
HDAC4-213ENST00000496347 SLC15A2Q16348 729 aa21.49■■□□□ 1.03
HDAC4-213ENST00000496347 SPON1Q9HCB6 807 aa21.49■■□□□ 1.03
HDAC4-213ENST00000496347 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.49■■□□□ 1.038e-7■□□□□ 8.8
HDAC4-213ENST00000496347 IGSF1Q8N6C5 1336 aa21.49■■□□□ 1.03
HDAC4-213ENST00000496347 TUBGCP6Q96RT7 1819 aa21.48■■□□□ 1.03
HDAC4-213ENST00000496347 C5P01031 1676 aa21.47■■□□□ 1.03
HDAC4-213ENST00000496347 CYP27B1O15528 508 aa21.47■■□□□ 1.03
HDAC4-213ENST00000496347 SPG7Q9UQ90 795 aa21.47■■□□□ 1.03
HDAC4-213ENST00000496347 NPC1L1Q9UHC9 1359 aa21.45■■□□□ 1.02
HDAC4-213ENST00000496347 TAF1LQ8IZX4 1826 aa21.44■■□□□ 1.02
HDAC4-213ENST00000496347 LRRC4BQ9NT99 713 aa21.44■■□□□ 1.02
HDAC4-213ENST00000496347 NKX1-1Q15270 411 aaPredicted RBP21.43■■□□□ 1.02
HDAC4-213ENST00000496347 KDRP35968 1356 aa21.41■■□□□ 1.02
HDAC4-213ENST00000496347 PALLDQ8WX93 1383 aa21.41■■□□□ 1.02
HDAC4-213ENST00000496347 PER1O15534 1290 aaPredicted RBP21.41■■□□□ 1.02
HDAC4-213ENST00000496347 ZNF827Q17R98 1081 aa21.41■■□□□ 1.02
HDAC4-213ENST00000496347 COL24A1Q17RW2 1714 aa21.41■■□□□ 1.02
HDAC4-213ENST00000496347 AKT1S1Q96B36 256 aa21.4■■□□□ 1.02
HDAC4-213ENST00000496347 PDGFDQ9GZP0 370 aaPredicted RBP21.4■■□□□ 1.02
HDAC4-213ENST00000496347 PPP1R1BQ9UD71 204 aaPredicted RBP21.4■■□□□ 1.02
HDAC4-213ENST00000496347 CCNL1Q9UK58 526 aaPredicted RBP21.4■■□□□ 1.02
HDAC4-213ENST00000496347 HMGB2P26583 209 aaKnown RBP21.39■■□□□ 1.01
HDAC4-213ENST00000496347 MTFR1LQ9H019 292 aa21.39■■□□□ 1.01
HDAC4-213ENST00000496347 ZBTB7AO95365 584 aa21.38■■□□□ 1.01
HDAC4-213ENST00000496347 PHKG2P15735 406 aa21.38■■□□□ 1.01
HDAC4-213ENST00000496347 IFNL2Q8IZJ0 200 aa21.38■■□□□ 1.01
HDAC4-213ENST00000496347 MPRIPQ6WCQ1 1025 aa21.37■■□□□ 1.01
HDAC4-213ENST00000496347 C4BP0C0L5 1744 aa21.36■■□□□ 1.01
HDAC4-213ENST00000496347 SMARCC1Q92922 1105 aaPredicted RBP21.36■■□□□ 1.01
HDAC4-213ENST00000496347 PTGER2P43116 358 aa21.35■■□□□ 1.01
HDAC4-213ENST00000496347 AMOTQ4VCS5 1084 aa21.35■■□□□ 1.01
HDAC4-213ENST00000496347 ZNF831Q5JPB2 1677 aa21.34■■□□□ 1.01
HDAC4-213ENST00000496347 HSP90AB1P08238 724 aaKnown RBP21.34■■□□□ 1.01
HDAC4-213ENST00000496347 IL13P35225 146 aa21.34■■□□□ 1.01
HDAC4-213ENST00000496347 CC2D1BQ5T0F9 858 aaKnown RBP21.34■■□□□ 1.01
HDAC4-213ENST00000496347 COL3A1P02461 1466 aaPredicted RBP21.33■■□□□ 1.01
HDAC4-213ENST00000496347 PNPLA7Q6ZV29 1317 aa21.33■■□□□ 1.01
HDAC4-213ENST00000496347 PLEKHO1Q53GL0 409 aaPredicted RBP21.33■■□□□ 1.01
HDAC4-213ENST00000496347 AEBP1Q8IUX7 1158 aa21.33■■□□□ 1.01
HDAC4-213ENST00000496347 TMOD3Q9NYL9 352 aa21.33■■□□□ 1.01
HDAC4-213ENST00000496347 TFCP2L1Q9NZI6 479 aa21.33■■□□□ 1.01
HDAC4-213ENST00000496347 KDM6AO15550 1401 aaPredicted RBP21.32■■□□□ 1
HDAC4-213ENST00000496347 MTHFSP49914 203 aa21.32■■□□□ 1
HDAC4-213ENST00000496347 KCNQ4P56696 695 aa21.32■■□□□ 1
HDAC4-213ENST00000496347 SLC16A10Q8TF71 515 aa21.32■■□□□ 1
HDAC4-213ENST00000496347 PIGBQ92521 554 aa21.32■■□□□ 1
HDAC4-213ENST00000496347 SCN11AQ9UI33 1791 aa21.32■■□□□ 1
HDAC4-213ENST00000496347 UBR3Q6ZT12 1888 aa21.32■■□□□ 1
HDAC4-213ENST00000496347 SULT6B1Q6IMI4 303 aa21.31■■□□□ 1
HDAC4-213ENST00000496347 DCAF5Q96JK2 942 aa21.31■■□□□ 1
HDAC4-213ENST00000496347 SGIP1Q9BQI5 828 aa21.31■■□□□ 1
HDAC4-213ENST00000496347 VIRMAQ69YN4 1812 aaKnown RBP21.3■■□□□ 1
HDAC4-213ENST00000496347 ZNF530Q6P9A1 599 aaPredicted RBP21.3■■□□□ 1
HDAC4-213ENST00000496347 ATF5Q9Y2D1 282 aaPredicted RBP21.3■■□□□ 1
HDAC4-213ENST00000496347 MAP3K5Q99683 1374 aa21.29■■□□□ 1
HDAC4-213ENST00000496347 ERVV-2B6SEH9 535 aa21.28■■□□□ 1
HDAC4-213ENST00000496347 COL5A3P25940 1745 aaPredicted RBP21.27■■□□□ 1
HDAC4-213ENST00000496347 CICQ96RK0 1608 aaPredicted RBP21.27■■□□□ 1
HDAC4-213ENST00000496347 C1orf141Q5JVX7 400 aa21.27■■□□□ 1
HDAC4-213ENST00000496347 MRC1P22897 1456 aa21.26■□□□□ 0.99
HDAC4-213ENST00000496347 ADAMTS7Q9UKP4 1686 aa21.26■□□□□ 0.99
HDAC4-213ENST00000496347 LOC102724428A0A0B4J2F2 783 aa21.26■□□□□ 0.99
HDAC4-213ENST00000496347 DIAPH1O60610 1272 aaKnown RBP21.26■□□□□ 0.99
HDAC4-213ENST00000496347 SIK1P57059 783 aa21.26■□□□□ 0.99
HDAC4-213ENST00000496347 UTRNP46939 3433 aa21.24■□□□□ 0.99
HDAC4-213ENST00000496347 POLD1P28340 1107 aa21.23■□□□□ 0.99
HDAC4-213ENST00000496347 FLAD1Q8NFF5 587 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms