RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 CEP85Q6P2H3 762 aa16.43■□□□□ 0.22
GPC1-209ENST00000495100 FBXW7Q969H0 707 aa16.43■□□□□ 0.22
GPC1-209ENST00000495100 EYA1Q99502 592 aa16.43■□□□□ 0.22
GPC1-209ENST00000495100 PNMA6EA0A0J9YXQ4 647 aa16.43■□□□□ 0.22
GPC1-209ENST00000495100 FLIIQ13045 1269 aa16.43■□□□□ 0.22
GPC1-209ENST00000495100 TTC22Q5TAA0 569 aa16.43■□□□□ 0.22
GPC1-209ENST00000495100 HAP1P54257 671 aaPredicted RBP16.42■□□□□ 0.22
GPC1-209ENST00000495100 TAF7Q15545 349 aaPredicted RBP16.42■□□□□ 0.22
GPC1-209ENST00000495100 MSH6P52701 1360 aa16.42■□□□□ 0.22
GPC1-209ENST00000495100 VPS37CA5D8V6 355 aaPredicted RBP16.42■□□□□ 0.22
GPC1-209ENST00000495100 PLXNC1O60486 1568 aa16.42■□□□□ 0.22
GPC1-209ENST00000495100 SPHKAPQ2M3C7 1700 aa16.42■□□□□ 0.22
GPC1-209ENST00000495100 PRR36Q9H6K5 1346 aa16.42■□□□□ 0.22
GPC1-209ENST00000495100 FIBPO43427 364 aa16.41■□□□□ 0.22
GPC1-209ENST00000495100 LRRCC1Q9C099 1032 aa16.41■□□□□ 0.22
GPC1-209ENST00000495100 BAG4O95429 457 aaKnown RBP16.41■□□□□ 0.22
GPC1-209ENST00000495100 MAP3K4Q9Y6R4 1608 aa16.41■□□□□ 0.22
GPC1-209ENST00000495100 RIMS2Q9UQ26 1411 aa16.41■□□□□ 0.22
GPC1-209ENST00000495100 ERC2O15083 957 aa16.4■□□□□ 0.22
GPC1-209ENST00000495100 STK3Q13188 491 aa16.4■□□□□ 0.22
GPC1-209ENST00000495100 FERMT3Q86UX7 667 aa16.4■□□□□ 0.22
GPC1-209ENST00000495100 ZNF692Q9BU19 519 aaPredicted RBP16.4■□□□□ 0.22
GPC1-209ENST00000495100 CCDC85AQ96PX6 553 aaPredicted RBP16.4■□□□□ 0.22
GPC1-209ENST00000495100 PA2G4Q9UQ80 394 aaKnown RBP16.4■□□□□ 0.22
GPC1-209ENST00000495100 NSD2O96028 1365 aa16.39■□□□□ 0.21
GPC1-209ENST00000495100 KCNQ3O43525 872 aa16.39■□□□□ 0.21
GPC1-209ENST00000495100 FAM43AQ8N2R8 423 aa16.39■□□□□ 0.21
GPC1-209ENST00000495100 RABEP1Q15276 862 aa16.39■□□□□ 0.21
GPC1-209ENST00000495100 CEP152O94986 1710 aa16.39■□□□□ 0.21
GPC1-209ENST00000495100 PI4KAP2A4QPH2 592 aa16.39■□□□□ 0.21
GPC1-209ENST00000495100 PI4KAP1Q8N8J0 262 aa16.39■□□□□ 0.21
GPC1-209ENST00000495100 NLRP2Q9NX02 1062 aa16.39■□□□□ 0.21
GPC1-209ENST00000495100 SETD1BQ9UPS6 1966 aaKnown RBP16.39■□□□□ 0.21
GPC1-209ENST00000495100 ESPNB1AK53 854 aa16.38■□□□□ 0.21
GPC1-209ENST00000495100 CCDC30Q5VVM6 783 aa16.38■□□□□ 0.21
GPC1-209ENST00000495100 ZNF530Q6P9A1 599 aaPredicted RBP16.38■□□□□ 0.21
GPC1-209ENST00000495100 DIAPH3Q9NSV4 1193 aa16.38■□□□□ 0.21
GPC1-209ENST00000495100 IL16Q14005 1332 aa16.38■□□□□ 0.21
GPC1-209ENST00000495100 MX1P20591 662 aa16.38■□□□□ 0.21
GPC1-209ENST00000495100 DCTPP1Q9H773 170 aa16.38■□□□□ 0.21
GPC1-209ENST00000495100 RNF17Q9BXT8 1623 aaKnown RBP16.38■□□□□ 0.21
GPC1-209ENST00000495100 LGR6Q9HBX8 967 aa16.37■□□□□ 0.21
GPC1-209ENST00000495100 KIF1BO60333 1816 aa16.37■□□□□ 0.21
GPC1-209ENST00000495100 PDE1AP54750 535 aa16.37■□□□□ 0.21
GPC1-209ENST00000495100 ANKRD44Q8N8A2 993 aa16.37■□□□□ 0.21
GPC1-209ENST00000495100 NDUFB9Q9Y6M9 179 aa16.37■□□□□ 0.21
GPC1-209ENST00000495100 SLC39A6Q13433 755 aa16.37■□□□□ 0.21
GPC1-209ENST00000495100 RPAP2Q8IXW5 612 aaPredicted RBP16.37■□□□□ 0.21
GPC1-209ENST00000495100 CCDC8Q9H0W5 538 aaPredicted RBP16.37■□□□□ 0.21
GPC1-209ENST00000495100 FAM13BQ9NYF5 915 aa16.37■□□□□ 0.21
GPC1-209ENST00000495100 R3HCC1Q9Y3T6 440 aaKnown RBP16.37■□□□□ 0.21
GPC1-209ENST00000495100 SBNO2Q9Y2G9 1366 aa16.36■□□□□ 0.21
GPC1-209ENST00000495100 GNAT3A8MTJ3 354 aa16.36■□□□□ 0.21
GPC1-209ENST00000495100 CEBPZQ03701 1054 aaKnown RBP16.36■□□□□ 0.21
GPC1-209ENST00000495100 PPP1R42Q7Z4L9 355 aa16.36■□□□□ 0.21
GPC1-209ENST00000495100 UNC5CLQ8IV45 518 aa16.36■□□□□ 0.21
GPC1-209ENST00000495100 PALD1Q9ULE6 856 aa16.36■□□□□ 0.21
GPC1-209ENST00000495100 EFCAB6Q5THR3 1501 aa16.36■□□□□ 0.21
GPC1-209ENST00000495100 KLHDC4Q8TBB5 520 aa16.36■□□□□ 0.21
GPC1-209ENST00000495100 CHPF2Q9P2E5 772 aa16.36■□□□□ 0.21
GPC1-209ENST00000495100 KCNA6P17658 529 aa16.35■□□□□ 0.21
GPC1-209ENST00000495100 C1orf141Q5JVX7 400 aa16.35■□□□□ 0.21
GPC1-209ENST00000495100 TULP4Q9NRJ4 1543 aa16.35■□□□□ 0.21
GPC1-209ENST00000495100 PPRC1Q5VV67 1664 aaKnown RBP16.35■□□□□ 0.21
GPC1-209ENST00000495100 IFIT2P09913 472 aaKnown RBP16.35■□□□□ 0.21
GPC1-209ENST00000495100 DDX17Q92841 729 aaKnown RBP16.35■□□□□ 0.21
GPC1-209ENST00000495100 TET3O43151 1660 aa16.34■□□□□ 0.21
GPC1-209ENST00000495100 CWF19L2Q2TBE0 894 aaKnown RBP16.34■□□□□ 0.21
GPC1-209ENST00000495100 ZNF830Q96NB3 372 aaPredicted RBP16.34■□□□□ 0.21
GPC1-209ENST00000495100 USP26Q9BXU7 913 aa16.34■□□□□ 0.21
GPC1-209ENST00000495100 SRCIN1Q9C0H9 1055 aa16.34■□□□□ 0.21
GPC1-209ENST00000495100 MYOM2P54296 1465 aa16.33■□□□□ 0.21
GPC1-209ENST00000495100 KAT6BQ8WYB5 2073 aa16.33■□□□□ 0.2
GPC1-209ENST00000495100 NUCB2P80303 420 aa16.33■□□□□ 0.2
GPC1-209ENST00000495100 NBPF7P0C2Y1 421 aaPredicted RBP16.33■□□□□ 0.2
GPC1-209ENST00000495100 PRIM1P49642 420 aaKnown RBP16.33■□□□□ 0.2
GPC1-209ENST00000495100 TMX3Q96JJ7 454 aa16.33■□□□□ 0.2
GPC1-209ENST00000495100 GOLGA6L4A6NEF3 574 aa16.32■□□□□ 0.2
GPC1-209ENST00000495100 BTBD11A6QL63 1104 aa16.32■□□□□ 0.2
GPC1-209ENST00000495100 RBM25P49756 843 aaKnown RBP16.32■□□□□ 0.2
GPC1-209ENST00000495100 ZMYM3Q14202 1370 aa16.32■□□□□ 0.2
GPC1-209ENST00000495100 PRAMEF22A3QJZ6 481 aa16.32■□□□□ 0.2
GPC1-209ENST00000495100 GNAI3P08754 354 aa16.32■□□□□ 0.2
GPC1-209ENST00000495100 VSIG10Q8N0Z9 540 aa16.32■□□□□ 0.2
GPC1-209ENST00000495100 CABLES1Q8TDN4 633 aa16.32■□□□□ 0.2
GPC1-209ENST00000495100 BOLA2Q9H3K6 86 aa16.32■□□□□ 0.2
GPC1-209ENST00000495100 CHL1O00533 1208 aa16.32■□□□□ 0.2
GPC1-209ENST00000495100 HSP90B1P14625 803 aaKnown RBP16.32■□□□□ 0.2
GPC1-209ENST00000495100 CCT4P50991 539 aaKnown RBP16.32■□□□□ 0.2
GPC1-209ENST00000495100 RAB3GAP1Q15042 981 aa16.32■□□□□ 0.2
GPC1-209ENST00000495100 RIC3Q7Z5B4 369 aa16.32■□□□□ 0.2
GPC1-209ENST00000495100 TSPOAP1O95153 1857 aa16.31■□□□□ 0.2
GPC1-209ENST00000495100 SKOR2Q2VWA4 1001 aaPredicted RBP16.31■□□□□ 0.2
GPC1-209ENST00000495100 NECAB1Q8N987 351 aa16.31■□□□□ 0.2
GPC1-209ENST00000495100 HSP90AA2PQ14568 343 aaPredicted RBP16.31■□□□□ 0.2
GPC1-209ENST00000495100 CCDC83Q8IWF9 413 aa16.31■□□□□ 0.2
GPC1-209ENST00000495100 DNAJC2Q99543 621 aaKnown RBP16.31■□□□□ 0.2
GPC1-209ENST00000495100 KIF2CQ99661 725 aa16.31■□□□□ 0.2
GPC1-209ENST00000495100 PRPF40BQ6NWY9 871 aaKnown RBP16.3■□□□□ 0.2
GPC1-209ENST00000495100 IQGAP1P46940 1657 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms