RNA–Protein interactions for RNA: ENST00000494815.1

TSPAN4-212, Transcript of tetraspanin 4, humanhuman

TSL 2

Gene TSPAN4, Length 2,187 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-212ENST00000494815 KIF16BQ96L93 1317 aa23.7■■□□□ 1.38
TSPAN4-212ENST00000494815 BRPF1P55201 1214 aaPredicted RBP23.7■■□□□ 1.38
TSPAN4-212ENST00000494815 PANK1Q8TE04 598 aa23.7■■□□□ 1.38
TSPAN4-212ENST00000494815 DDX17Q92841 729 aaKnown RBP23.7■■□□□ 1.38
TSPAN4-212ENST00000494815 ZBTB7CA1YPR0 619 aa23.69■■□□□ 1.38
TSPAN4-212ENST00000494815 MCM10Q7L590 875 aa23.69■■□□□ 1.38
TSPAN4-212ENST00000494815 CHL1O00533 1208 aa23.69■■□□□ 1.38
TSPAN4-212ENST00000494815 CRB1P82279 1406 aa23.69■■□□□ 1.38
TSPAN4-212ENST00000494815 SPATA31A3Q5VYP0 1347 aa23.69■■□□□ 1.38
TSPAN4-212ENST00000494815 VAMP4O75379 141 aa23.68■■□□□ 1.38
TSPAN4-212ENST00000494815 NBPF6Q5VWK0 638 aa23.68■■□□□ 1.38
TSPAN4-212ENST00000494815 NBPF4Q96M43 638 aa23.68■■□□□ 1.38
TSPAN4-212ENST00000494815 SLAIN2Q9P270 581 aa23.68■■□□□ 1.38
TSPAN4-212ENST00000494815 NCAPD2Q15021 1401 aa23.68■■□□□ 1.38
TSPAN4-212ENST00000494815 COG6Q9Y2V7 657 aa23.67■■□□□ 1.38
TSPAN4-212ENST00000494815 IPO8O15397 1037 aaKnown RBP23.66■■□□□ 1.38
TSPAN4-212ENST00000494815 GNAT3A8MTJ3 354 aa23.65■■□□□ 1.38
TSPAN4-212ENST00000494815 RLBP1P12271 317 aa23.65■■□□□ 1.38
TSPAN4-212ENST00000494815 HAP1P54257 671 aaPredicted RBP23.65■■□□□ 1.38
TSPAN4-212ENST00000494815 TWISTNBQ3B726 338 aaPredicted RBP23.65■■□□□ 1.38
TSPAN4-212ENST00000494815 ATF7IPQ6VMQ6 1270 aa23.65■■□□□ 1.38
TSPAN4-212ENST00000494815 DZIP1LQ8IYY4 767 aaKnown RBP23.65■■□□□ 1.38
TSPAN4-212ENST00000494815 USHBP1Q8N6Y0 703 aa23.65■■□□□ 1.38
TSPAN4-212ENST00000494815 TSPYL6Q8N831 410 aa23.65■■□□□ 1.38
TSPAN4-212ENST00000494815 KDM2BQ8NHM5 1336 aa23.65■■□□□ 1.38
TSPAN4-212ENST00000494815 MAP3K5Q99683 1374 aa23.65■■□□□ 1.38
TSPAN4-212ENST00000494815 FTSJ3Q8IY81 847 aaKnown RBP23.64■■□□□ 1.38
TSPAN4-212ENST00000494815 ANKRD24Q8TF21 1146 aa23.64■■□□□ 1.38
TSPAN4-212ENST00000494815 KIAA0232Q92628 1395 aa23.64■■□□□ 1.37
TSPAN4-212ENST00000494815 ABCC6O95255 1503 aa23.64■■□□□ 1.37
TSPAN4-212ENST00000494815 LRRC37A3O60309 1634 aa23.64■■□□□ 1.37
TSPAN4-212ENST00000494815 PLEKHG5O94827 1062 aa23.64■■□□□ 1.37
TSPAN4-212ENST00000494815 CENPQQ7L2Z9 268 aaPredicted RBP23.64■■□□□ 1.37
TSPAN4-212ENST00000494815 CLUAP1Q96AJ1 413 aa23.64■■□□□ 1.37
TSPAN4-212ENST00000494815 CAMTA1Q9Y6Y1 1673 aa23.63■■□□□ 1.37
TSPAN4-212ENST00000494815 TRIM27P14373 513 aa23.63■■□□□ 1.37
TSPAN4-212ENST00000494815 C8orf58Q8NAV2 365 aa23.62■■□□□ 1.37
TSPAN4-212ENST00000494815 NOB1Q9ULX3 412 aaKnown RBP23.62■■□□□ 1.37
TSPAN4-212ENST00000494815 SOS2Q07890 1332 aaPredicted RBP23.62■■□□□ 1.37
TSPAN4-212ENST00000494815 LRRC59Q96AG4 307 aaKnown RBP23.62■■□□□ 1.37
TSPAN4-212ENST00000494815 TNNQ9UQP3 1299 aa23.62■■□□□ 1.37
TSPAN4-212ENST00000494815 AXIN2Q9Y2T1 843 aa23.62■■□□□ 1.37
TSPAN4-212ENST00000494815 PDE4AP27815 886 aa23.61■■□□□ 1.37
TSPAN4-212ENST00000494815 ZC3H6P61129 1189 aaKnown RBP23.61■■□□□ 1.37
TSPAN4-212ENST00000494815 MVPQ14764 893 aaKnown RBP23.61■■□□□ 1.37
TSPAN4-212ENST00000494815 CRYBG1Q9Y4K1 1723 aa23.61■■□□□ 1.37
TSPAN4-212ENST00000494815 ERBB3P21860 1342 aa23.61■■□□□ 1.37
TSPAN4-212ENST00000494815 RGPD2P0DJD1 1756 aa23.6■■□□□ 1.37
TSPAN4-212ENST00000494815 ARHGAP45Q92619 1136 aa23.59■■□□□ 1.37
TSPAN4-212ENST00000494815 CPDO75976 1380 aa23.59■■□□□ 1.37
TSPAN4-212ENST00000494815 MRPL50Q8N5N7 158 aaKnown RBP23.59■■□□□ 1.37
TSPAN4-212ENST00000494815 BACH2Q9BYV9 841 aa23.59■■□□□ 1.37
TSPAN4-212ENST00000494815 ELL2O00472 640 aaPredicted RBP23.58■■□□□ 1.37
TSPAN4-212ENST00000494815 AMOTQ4VCS5 1084 aa23.58■■□□□ 1.36
TSPAN4-212ENST00000494815 BABAM1Q9NWV8 329 aa23.58■■□□□ 1.36
TSPAN4-212ENST00000494815 NPM2Q86SE8 214 aaKnown RBP23.57■■□□□ 1.36
TSPAN4-212ENST00000494815 TSPYL4Q9UJ04 414 aa23.57■■□□□ 1.36
TSPAN4-212ENST00000494815 LMO7Q8WWI1 1683 aa23.56■■□□□ 1.36
TSPAN4-212ENST00000494815 COL18A1P39060 1754 aa23.56■■□□□ 1.36
TSPAN4-212ENST00000494815 PLEKHO1Q53GL0 409 aaPredicted RBP23.56■■□□□ 1.36
TSPAN4-212ENST00000494815 IL17REQ8NFR9 667 aa23.55■■□□□ 1.36
TSPAN4-212ENST00000494815 CABLES1Q8TDN4 633 aa23.55■■□□□ 1.36
TSPAN4-212ENST00000494815 DDX19BQ9UMR2 479 aa23.55■■□□□ 1.36
TSPAN4-212ENST00000494815 RGPD5Q99666 1765 aa23.54■■□□□ 1.36
TSPAN4-212ENST00000494815 CEMIPQ8WUJ3 1361 aa23.54■■□□□ 1.36
TSPAN4-212ENST00000494815 AKAP4Q5JQC9 854 aa23.52■■□□□ 1.36
TSPAN4-212ENST00000494815 USP35Q9P2H5 1018 aa23.52■■□□□ 1.36
TSPAN4-212ENST00000494815 NHSL1Q5SYE7 1610 aa23.52■■□□□ 1.36
TSPAN4-212ENST00000494815 UBE2Q2Q8WVN8 375 aa23.52■■□□□ 1.36
TSPAN4-212ENST00000494815 FAM208AQ9UK61 1670 aaKnown RBP23.52■■□□□ 1.36
TSPAN4-212ENST00000494815 PLEKHG2Q9H7P9 1386 aa23.52■■□□□ 1.35
TSPAN4-212ENST00000494815 TAF7Q15545 349 aaPredicted RBP23.51■■□□□ 1.35
TSPAN4-212ENST00000494815 ITPRIPQ8IWB1 547 aa23.51■■□□□ 1.35
TSPAN4-212ENST00000494815 KRT24Q2M2I5 525 aa23.51■■□□□ 1.35
TSPAN4-212ENST00000494815 ZNF530Q6P9A1 599 aaPredicted RBP23.51■■□□□ 1.35
TSPAN4-212ENST00000494815 TMEM57Q8N5G2 664 aa23.51■■□□□ 1.35
TSPAN4-212ENST00000494815 MIS18AQ9NYP9 233 aa23.51■■□□□ 1.35
TSPAN4-212ENST00000494815 SOS1Q07889 1333 aaPredicted RBP23.51■■□□□ 1.35
TSPAN4-212ENST00000494815 OVOS2A0A0G2JMS6 1433 aa23.49■■□□□ 1.35
TSPAN4-212ENST00000494815 API5Q9BZZ5 524 aaKnown RBP23.49■■□□□ 1.35
TSPAN4-212ENST00000494815 NLRP2Q9NX02 1062 aa23.48■■□□□ 1.35
TSPAN4-212ENST00000494815 C1orf141Q5JVX7 400 aa23.47■■□□□ 1.35
TSPAN4-212ENST00000494815 PCDHB15Q9Y5E8 787 aa23.47■■□□□ 1.35
TSPAN4-212ENST00000494815 ABCC4O15439 1325 aa23.47■■□□□ 1.35
TSPAN4-212ENST00000494815 IGHDP01880 384 aa23.47■■□□□ 1.35
TSPAN4-212ENST00000494815 CHRNA2Q15822 529 aa23.47■■□□□ 1.35
TSPAN4-212ENST00000494815 CHMP4BQ9H444 224 aaKnown RBP23.47■■□□□ 1.35
TSPAN4-212ENST00000494815 RAPGEF4Q8WZA2 1011 aa23.46■■□□□ 1.35
TSPAN4-212ENST00000494815 CSB-PGBD3P0DP91 1061 aa23.45■■□□□ 1.34
TSPAN4-212ENST00000494815 ZBTB40Q9NUA8 1239 aa23.44■■□□□ 1.34
TSPAN4-212ENST00000494815 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.44■■□□□ 1.34
TSPAN4-212ENST00000494815 PTPRCP08575 1304 aa23.44■■□□□ 1.34
TSPAN4-212ENST00000494815 PRDM11Q9NQV5 511 aa23.44■■□□□ 1.34
TSPAN4-212ENST00000494815 RWDD1Q9H446 243 aaPredicted RBP23.43■■□□□ 1.34
TSPAN4-212ENST00000494815 LGR6Q9HBX8 967 aa23.43■■□□□ 1.34
TSPAN4-212ENST00000494815 ABCA3Q99758 1704 aa23.43■■□□□ 1.34
TSPAN4-212ENST00000494815 LTBP4Q8N2S1 1624 aa23.42■■□□□ 1.34
TSPAN4-212ENST00000494815 TATP17735 454 aaPredicted RBP23.42■■□□□ 1.34
TSPAN4-212ENST00000494815 DDRGK1Q96HY6 314 aa23.42■■□□□ 1.34
TSPAN4-212ENST00000494815 RNMTO43148 476 aaKnown RBP23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms