RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 C5P01031 1676 aa20.34■□□□□ 0.85
PRPF40A-211ENST00000493468 PRIM1P49642 420 aaKnown RBP20.33■□□□□ 0.85
PRPF40A-211ENST00000493468 RGPD2P0DJD1 1756 aa20.33■□□□□ 0.84
PRPF40A-211ENST00000493468 KCNQ4P56696 695 aa20.32■□□□□ 0.84
PRPF40A-211ENST00000493468 TAF1LQ8IZX4 1826 aa20.32■□□□□ 0.84
PRPF40A-211ENST00000493468 SYTL4Q96C24 671 aaPredicted RBP20.31■□□□□ 0.84
PRPF40A-211ENST00000493468 CCNL1Q9UK58 526 aaPredicted RBP20.31■□□□□ 0.84
PRPF40A-211ENST00000493468 A0A1W2PP64 1363 aa20.31■□□□□ 0.84
PRPF40A-211ENST00000493468 ADCY9O60503 1353 aa20.31■□□□□ 0.84
PRPF40A-211ENST00000493468 MEGF6O75095 1541 aa20.29■□□□□ 0.84
PRPF40A-211ENST00000493468 COL23A1Q86Y22 540 aaPredicted RBP20.29■□□□□ 0.84
PRPF40A-211ENST00000493468 TERF2IPQ9NYB0 399 aa20.29■□□□□ 0.84
PRPF40A-211ENST00000493468 CD2APQ9Y5K6 639 aa20.29■□□□□ 0.84
PRPF40A-211ENST00000493468 HMGB2P26583 209 aaKnown RBP20.28■□□□□ 0.84
PRPF40A-211ENST00000493468 ZCRB1Q8TBF4 217 aaKnown RBP20.28■□□□□ 0.84
PRPF40A-211ENST00000493468 TMC1Q8TDI8 760 aa20.28■□□□□ 0.84
PRPF40A-211ENST00000493468 PUS7Q96PZ0 661 aaKnown RBP20.28■□□□□ 0.84
PRPF40A-211ENST00000493468 USP47Q96K76 1375 aa20.28■□□□□ 0.84
PRPF40A-211ENST00000493468 SLC12A5Q9H2X9 1139 aa20.27■□□□□ 0.84
PRPF40A-211ENST00000493468 LTV1Q96GA3 475 aaPredicted RBP20.26■□□□□ 0.83
PRPF40A-211ENST00000493468 GPBP1L1Q9HC44 474 aaPredicted RBP20.26■□□□□ 0.83
PRPF40A-211ENST00000493468 CGNL1Q0VF96 1302 aa20.26■□□□□ 0.83
PRPF40A-211ENST00000493468 RTL1A6NKG5 1358 aa20.25■□□□□ 0.83
PRPF40A-211ENST00000493468 MSH5O43196 834 aa20.25■□□□□ 0.83
PRPF40A-211ENST00000493468 HSPA6P17066 643 aa20.25■□□□□ 0.83
PRPF40A-211ENST00000493468 HOXC9P31274 260 aa20.25■□□□□ 0.83
PRPF40A-211ENST00000493468 MAP3K19Q56UN5 1328 aa20.25■□□□□ 0.83
PRPF40A-211ENST00000493468 FLAD1Q8NFF5 587 aa20.24■□□□□ 0.83
PRPF40A-211ENST00000493468 SIN3AQ96ST3 1273 aa20.23■□□□□ 0.83
PRPF40A-211ENST00000493468 TOGARAM1Q9Y4F4 1720 aa20.22■□□□□ 0.83
PRPF40A-211ENST00000493468 MSL1Q68DK7 614 aa20.22■□□□□ 0.83
PRPF40A-211ENST00000493468 UBR3Q6ZT12 1888 aa20.22■□□□□ 0.83
PRPF40A-211ENST00000493468 C4BP0C0L5 1744 aa20.22■□□□□ 0.83
PRPF40A-211ENST00000493468 COG3Q96JB2 828 aa20.21■□□□□ 0.83
PRPF40A-211ENST00000493468 CARD11Q9BXL7 1154 aa20.21■□□□□ 0.83
PRPF40A-211ENST00000493468 AMPHP49418 695 aa20.2■□□□□ 0.82
PRPF40A-211ENST00000493468 ITGB4P16144 1822 aa20.2■□□□□ 0.82
PRPF40A-211ENST00000493468 CICQ96RK0 1608 aaPredicted RBP20.2■□□□□ 0.82
PRPF40A-211ENST00000493468 PALLDQ8WX93 1383 aa20.18■□□□□ 0.82
PRPF40A-211ENST00000493468 SMG6Q86US8 1419 aaKnown RBP20.18■□□□□ 0.82
PRPF40A-211ENST00000493468 NSD3Q9BZ95 1437 aa20.18■□□□□ 0.82
PRPF40A-211ENST00000493468 NEUROD1Q13562 356 aa20.16■□□□□ 0.82
PRPF40A-211ENST00000493468 NBPF6Q5VWK0 638 aa20.16■□□□□ 0.82
PRPF40A-211ENST00000493468 NBPF4Q96M43 638 aa20.16■□□□□ 0.82
PRPF40A-211ENST00000493468 PCDH11XQ9BZA7 1347 aa20.16■□□□□ 0.82
PRPF40A-211ENST00000493468 PCDH11YQ9BZA8 1340 aa20.16■□□□□ 0.82
PRPF40A-211ENST00000493468 PKD1L3Q7Z443 1732 aa20.16■□□□□ 0.82
PRPF40A-211ENST00000493468 RAPGEF4Q8WZA2 1011 aa20.15■□□□□ 0.82
PRPF40A-211ENST00000493468 MAP2P11137 1827 aaKnown RBP20.14■□□□□ 0.81
PRPF40A-211ENST00000493468 IGSF1Q8N6C5 1336 aa20.14■□□□□ 0.81
PRPF40A-211ENST00000493468 KIF13BQ9NQT8 1826 aa20.13■□□□□ 0.81
PRPF40A-211ENST00000493468 ZNF526Q8TF50 670 aaPredicted RBP20.13■□□□□ 0.81
PRPF40A-211ENST00000493468 TATP17735 454 aaPredicted RBP20.12■□□□□ 0.81
PRPF40A-211ENST00000493468 SMARCC1Q92922 1105 aaPredicted RBP20.12■□□□□ 0.81
PRPF40A-211ENST00000493468 KIF3CO14782 793 aa20.11■□□□□ 0.81
PRPF40A-211ENST00000493468 FBLN1P23142 703 aa20.11■□□□□ 0.81
PRPF40A-211ENST00000493468 AK7Q96M32 723 aa20.11■□□□□ 0.81
PRPF40A-211ENST00000493468 INSRP06213 1382 aa20.1■□□□□ 0.81
PRPF40A-211ENST00000493468 KIF24Q5T7B8 1368 aa20.1■□□□□ 0.81
PRPF40A-211ENST00000493468 USHBP1Q8N6Y0 703 aa20.1■□□□□ 0.81
PRPF40A-211ENST00000493468 KIF20BQ96Q89 1820 aa20.1■□□□□ 0.81
PRPF40A-211ENST00000493468 SLC24A1O60721 1099 aa20.09■□□□□ 0.81
PRPF40A-211ENST00000493468 SSFA2P28290 1259 aa20.09■□□□□ 0.81
PRPF40A-211ENST00000493468 RRS1Q15050 365 aaKnown RBP20.09■□□□□ 0.81
PRPF40A-211ENST00000493468 AMIGO3Q86WK7 504 aa20.09■□□□□ 0.81
PRPF40A-211ENST00000493468 TESK2Q96S53 571 aa20.09■□□□□ 0.81
PRPF40A-211ENST00000493468 KIAA1551Q9HCM1 1747 aa20.09■□□□□ 0.81
PRPF40A-211ENST00000493468 MPRIPQ6WCQ1 1025 aa20.08■□□□□ 0.81
PRPF40A-211ENST00000493468 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.07■□□□□ 0.8
PRPF40A-211ENST00000493468 CYP27B1O15528 508 aa20.07■□□□□ 0.8
PRPF40A-211ENST00000493468 APLP1P51693 650 aa20.07■□□□□ 0.8
PRPF40A-211ENST00000493468 NCAPD2Q15021 1401 aa20.07■□□□□ 0.8
PRPF40A-211ENST00000493468 FLT4P35916 1363 aa20.07■□□□□ 0.8
PRPF40A-211ENST00000493468 FYB1O15117 783 aa20.05■□□□□ 0.8
PRPF40A-211ENST00000493468 PHF14O94880 888 aa20.04■□□□□ 0.8
PRPF40A-211ENST00000493468 ANKRD26Q9UPS8 1709 aa20.04■□□□□ 0.8
PRPF40A-211ENST00000493468 PXDNLA1KZ92 1463 aa20.04■□□□□ 0.8
PRPF40A-211ENST00000493468 NKX1-1Q15270 411 aaPredicted RBP20.03■□□□□ 0.8
PRPF40A-211ENST00000493468 HSP90AB2PQ58FF8 381 aa20.03■□□□□ 0.8
PRPF40A-211ENST00000493468 N4BP2Q86UW6 1770 aaPredicted RBP20.03■□□□□ 0.8
PRPF40A-211ENST00000493468 BRCA1P38398 1863 aaKnown RBP20.03■□□□□ 0.8
PRPF40A-211ENST00000493468 WDR90Q96KV7 1748 aa20.02■□□□□ 0.8
PRPF40A-211ENST00000493468 PIGBQ92521 554 aa20.02■□□□□ 0.8
PRPF40A-211ENST00000493468 ZNF831Q5JPB2 1677 aa20.02■□□□□ 0.8
PRPF40A-211ENST00000493468 LOC102724428A0A0B4J2F2 783 aa20.01■□□□□ 0.79
PRPF40A-211ENST00000493468 TOMM70O94826 608 aa20.01■□□□□ 0.79
PRPF40A-211ENST00000493468 SIK1P57059 783 aa20.01■□□□□ 0.79
PRPF40A-211ENST00000493468 LINC00116Q8NCU8 138 aa20.01■□□□□ 0.79
PRPF40A-211ENST00000493468 GGNBP2Q9H3C7 697 aa20.01■□□□□ 0.79
PRPF40A-211ENST00000493468 WWC3Q9ULE0 1092 aa20.01■□□□□ 0.79
PRPF40A-211ENST00000493468 ST20-MTHFSA0A0A6YYL1 179 aa20■□□□□ 0.79
PRPF40A-211ENST00000493468 DNAJC5GQ8N7S2 189 aa20■□□□□ 0.79
PRPF40A-211ENST00000493468 TONSLQ96HA7 1378 aa19.99■□□□□ 0.79
PRPF40A-211ENST00000493468 C10orf71Q711Q0 1435 aa19.99■□□□□ 0.79
PRPF40A-211ENST00000493468 ARFGEF1Q9Y6D6 1849 aa19.99■□□□□ 0.79
PRPF40A-211ENST00000493468 TGFB2P61812 414 aa19.98■□□□□ 0.79
PRPF40A-211ENST00000493468 SMIM5Q71RC9 77 aa19.98■□□□□ 0.79
PRPF40A-211ENST00000493468 GNPATO15228 680 aa19.97■□□□□ 0.79
PRPF40A-211ENST00000493468 C4AP0C0L4 1744 aa19.96■□□□□ 0.79
PRPF40A-211ENST00000493468 MMP10P09238 476 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms