RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 PTF1AQ7RTS3 328 aa20.69■□□□□ 0.9
USP39-217ENST00000491659 RAPGEF4Q8WZA2 1011 aa20.69■□□□□ 0.9
USP39-217ENST00000491659 ACSBG1Q96GR2 724 aa20.69■□□□□ 0.9
USP39-217ENST00000491659 KNSTRNQ9Y448 316 aa20.69■□□□□ 0.9
USP39-217ENST00000491659 DDX54Q8TDD1 881 aaKnown RBP20.68■□□□□ 0.9
USP39-217ENST00000491659 WASHC2AQ641Q2 1341 aa20.68■□□□□ 0.9
USP39-217ENST00000491659 TATP17735 454 aaPredicted RBP20.67■□□□□ 0.9
USP39-217ENST00000491659 ZCRB1Q8TBF4 217 aaKnown RBP20.67■□□□□ 0.9
USP39-217ENST00000491659 POLKQ9UBT6 870 aa20.67■□□□□ 0.9
USP39-217ENST00000491659 PKD1L3Q7Z443 1732 aa20.67■□□□□ 0.9
USP39-217ENST00000491659 KCNQ2O43526 872 aa20.66■□□□□ 0.9
USP39-217ENST00000491659 NCAPD2Q15021 1401 aa20.65■□□□□ 0.9
USP39-217ENST00000491659 MORC1Q86VD1 984 aa20.65■□□□□ 0.9
USP39-217ENST00000491659 PCDH11XQ9BZA7 1347 aa20.62■□□□□ 0.89
USP39-217ENST00000491659 PCDH11YQ9BZA8 1340 aa20.62■□□□□ 0.89
USP39-217ENST00000491659 TXNRD1Q16881 649 aa20.61■□□□□ 0.89
USP39-217ENST00000491659 EIF4A2Q14240 407 aaKnown RBP20.59■□□□□ 0.89
USP39-217ENST00000491659 AMER1Q5JTC6 1135 aaPredicted RBP20.59■□□□□ 0.89
USP39-217ENST00000491659 SYTL4Q96C24 671 aaPredicted RBP20.59■□□□□ 0.89
USP39-217ENST00000491659 PROM2Q8N271 834 aa20.58■□□□□ 0.89
USP39-217ENST00000491659 EYA1Q99502 592 aa20.58■□□□□ 0.89
USP39-217ENST00000491659 PAPPAQ13219 1627 aa20.57■□□□□ 0.88
USP39-217ENST00000491659 CASZ1Q86V15 1759 aa20.57■□□□□ 0.88
USP39-217ENST00000491659 LY75O60449 1722 aa20.57■□□□□ 0.88
USP39-217ENST00000491659 TOGARAM1Q9Y4F4 1720 aa20.57■□□□□ 0.88
USP39-217ENST00000491659 ANO8Q9HCE9 1232 aaPredicted RBP20.56■□□□□ 0.88
USP39-217ENST00000491659 PRIM1P49642 420 aaKnown RBP20.55■□□□□ 0.88
USP39-217ENST00000491659 STK32BQ9NY57 414 aa20.55■□□□□ 0.88
USP39-217ENST00000491659 SPG7Q9UQ90 795 aa20.55■□□□□ 0.88
USP39-217ENST00000491659 ITGB4P16144 1822 aa20.55■□□□□ 0.88
USP39-217ENST00000491659 PLEKHG2Q9H7P9 1386 aa20.54■□□□□ 0.88
USP39-217ENST00000491659 IGSF1Q8N6C5 1336 aa20.53■□□□□ 0.88
USP39-217ENST00000491659 PER1O15534 1290 aaPredicted RBP20.53■□□□□ 0.88
USP39-217ENST00000491659 CYP27B1O15528 508 aa20.52■□□□□ 0.88
USP39-217ENST00000491659 CC2D1BQ5T0F9 858 aaKnown RBP20.52■□□□□ 0.88
USP39-217ENST00000491659 NPC1L1Q9UHC9 1359 aa20.51■□□□□ 0.87
USP39-217ENST00000491659 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.51■□□□□ 0.879e-7■□□□□ 8.5
USP39-217ENST00000491659 SLC15A2Q16348 729 aa20.5■□□□□ 0.87
USP39-217ENST00000491659 QSER1Q2KHR3 1735 aa20.5■□□□□ 0.87
USP39-217ENST00000491659 SRCAPQ6ZRS2 3230 aa20.49■□□□□ 0.87
USP39-217ENST00000491659 SLC27A3Q5K4L6 730 aa20.49■□□□□ 0.87
USP39-217ENST00000491659 SPON1Q9HCB6 807 aa20.47■□□□□ 0.87
USP39-217ENST00000491659 TUBGCP6Q96RT7 1819 aa20.46■□□□□ 0.87
USP39-217ENST00000491659 C5P01031 1676 aa20.46■□□□□ 0.87
USP39-217ENST00000491659 NKX1-1Q15270 411 aaPredicted RBP20.46■□□□□ 0.87
USP39-217ENST00000491659 MPRIPQ6WCQ1 1025 aa20.46■□□□□ 0.87
USP39-217ENST00000491659 IFNL2Q8IZJ0 200 aa20.46■□□□□ 0.87
USP39-217ENST00000491659 LRRC4BQ9NT99 713 aa20.46■□□□□ 0.87
USP39-217ENST00000491659 MTHFSP49914 203 aa20.45■□□□□ 0.86
USP39-217ENST00000491659 PHKG2P15735 406 aa20.44■□□□□ 0.86
USP39-217ENST00000491659 CNGB1Q14028 1251 aaPredicted RBP20.44■□□□□ 0.86
USP39-217ENST00000491659 CCNL1Q9UK58 526 aaPredicted RBP20.44■□□□□ 0.86
USP39-217ENST00000491659 KDRP35968 1356 aa20.44■□□□□ 0.86
USP39-217ENST00000491659 TAF1LQ8IZX4 1826 aa20.43■□□□□ 0.86
USP39-217ENST00000491659 IL13P35225 146 aa20.43■□□□□ 0.86
USP39-217ENST00000491659 ZNF827Q17R98 1081 aa20.43■□□□□ 0.86
USP39-217ENST00000491659 PLEKHO1Q53GL0 409 aaPredicted RBP20.43■□□□□ 0.86
USP39-217ENST00000491659 PALLDQ8WX93 1383 aa20.43■□□□□ 0.86
USP39-217ENST00000491659 AMOTQ4VCS5 1084 aa20.42■□□□□ 0.86
USP39-217ENST00000491659 SULT6B1Q6IMI4 303 aa20.42■□□□□ 0.86
USP39-217ENST00000491659 AEBP1Q8IUX7 1158 aa20.42■□□□□ 0.86
USP39-217ENST00000491659 PPP1R1BQ9UD71 204 aaPredicted RBP20.42■□□□□ 0.86
USP39-217ENST00000491659 SMARCC1Q92922 1105 aaPredicted RBP20.41■□□□□ 0.86
USP39-217ENST00000491659 PDGFDQ9GZP0 370 aaPredicted RBP20.41■□□□□ 0.86
USP39-217ENST00000491659 TMOD3Q9NYL9 352 aa20.41■□□□□ 0.86
USP39-217ENST00000491659 ZBTB7AO95365 584 aa20.4■□□□□ 0.86
USP39-217ENST00000491659 HSP90AB1P08238 724 aaKnown RBP20.4■□□□□ 0.86
USP39-217ENST00000491659 KCNQ4P56696 695 aa20.4■□□□□ 0.86
USP39-217ENST00000491659 ZNF530Q6P9A1 599 aaPredicted RBP20.4■□□□□ 0.86
USP39-217ENST00000491659 COL3A1P02461 1466 aaPredicted RBP20.39■□□□□ 0.85
USP39-217ENST00000491659 DIAPH1O60610 1272 aaKnown RBP20.39■□□□□ 0.85
USP39-217ENST00000491659 HMGB2P26583 209 aaKnown RBP20.39■□□□□ 0.85
USP39-217ENST00000491659 AKT1S1Q96B36 256 aa20.39■□□□□ 0.85
USP39-217ENST00000491659 PIGBQ92521 554 aa20.38■□□□□ 0.85
USP39-217ENST00000491659 VIRMAQ69YN4 1812 aaKnown RBP20.37■□□□□ 0.85
USP39-217ENST00000491659 C4BP0C0L5 1744 aa20.37■□□□□ 0.85
USP39-217ENST00000491659 C1orf141Q5JVX7 400 aa20.37■□□□□ 0.85
USP39-217ENST00000491659 DCAF5Q96JK2 942 aa20.37■□□□□ 0.85
USP39-217ENST00000491659 MTFR1LQ9H019 292 aa20.37■□□□□ 0.85
USP39-217ENST00000491659 TFCP2L1Q9NZI6 479 aa20.37■□□□□ 0.85
USP39-217ENST00000491659 SCN11AQ9UI33 1791 aa20.36■□□□□ 0.85
USP39-217ENST00000491659 KDM6AO15550 1401 aaPredicted RBP20.36■□□□□ 0.85
USP39-217ENST00000491659 ATF5Q9Y2D1 282 aaPredicted RBP20.35■□□□□ 0.85
USP39-217ENST00000491659 PNPLA7Q6ZV29 1317 aa20.34■□□□□ 0.85
USP39-217ENST00000491659 ERVV-2B6SEH9 535 aa20.34■□□□□ 0.85
USP39-217ENST00000491659 HMOX1P09601 288 aa20.34■□□□□ 0.85
USP39-217ENST00000491659 CFAP53Q96M91 514 aa20.33■□□□□ 0.85
USP39-217ENST00000491659 COL24A1Q17RW2 1714 aa20.33■□□□□ 0.84
USP39-217ENST00000491659 PTGER2P43116 358 aa20.32■□□□□ 0.84
USP39-217ENST00000491659 SLC16A10Q8TF71 515 aa20.32■□□□□ 0.84
USP39-217ENST00000491659 ZNF831Q5JPB2 1677 aa20.32■□□□□ 0.84
USP39-217ENST00000491659 UBR3Q6ZT12 1888 aa20.31■□□□□ 0.84
USP39-217ENST00000491659 U2SURPO15042 1029 aaKnown RBP20.31■□□□□ 0.84
USP39-217ENST00000491659 LOC102724428A0A0B4J2F2 783 aa20.3■□□□□ 0.84
USP39-217ENST00000491659 SIK1P57059 783 aa20.3■□□□□ 0.84
USP39-217ENST00000491659 CABP4P57796 275 aa20.3■□□□□ 0.84
USP39-217ENST00000491659 ASAP1Q9ULH1 1129 aa20.3■□□□□ 0.84
USP39-217ENST00000491659 AKAP4Q5JQC9 854 aa20.29■□□□□ 0.84
USP39-217ENST00000491659 AK7Q96M32 723 aa20.29■□□□□ 0.84
USP39-217ENST00000491659 ATG3Q9NT62 314 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms