RNA–Protein interactions for RNA: ENST00000489758.1

CLIC4-203, Transcript of chloride intracellular channel 4, humanhuman

TSL 2

Gene CLIC4, Length 439 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-203ENST00000489758 CDCA7Q9BWT1 371 aaPredicted RBP21.46■■□□□ 1.03
CLIC4-203ENST00000489758 PLEKHG2Q9H7P9 1386 aa21.45■■□□□ 1.02
CLIC4-203ENST00000489758 TATP17735 454 aaPredicted RBP21.44■■□□□ 1.02
CLIC4-203ENST00000489758 PRKAR2BP31323 418 aa21.44■■□□□ 1.02
CLIC4-203ENST00000489758 PLEKHF1Q96S99 279 aa21.44■■□□□ 1.02
CLIC4-203ENST00000489758 WNK3Q9BYP7 1800 aa21.43■■□□□ 1.02
CLIC4-203ENST00000489758 RGS12O14924 1447 aa21.42■■□□□ 1.02
CLIC4-203ENST00000489758 SEPT12Q8IYM1 358 aa21.42■■□□□ 1.02
CLIC4-203ENST00000489758 TNS2Q63HR2 1409 aa21.41■■□□□ 1.02
CLIC4-203ENST00000489758 PHACTR3Q96KR7 559 aa21.41■■□□□ 1.02
CLIC4-203ENST00000489758 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.41■■□□□ 1.02
CLIC4-203ENST00000489758 LRRC37A3O60309 1634 aa21.4■■□□□ 1.02
CLIC4-203ENST00000489758 PARP4Q9UKK3 1724 aaKnown RBP21.4■■□□□ 1.02
CLIC4-203ENST00000489758 DDB1Q16531 1140 aa21.39■■□□□ 1.01
CLIC4-203ENST00000489758 FAM9BQ8IZU0 186 aa21.39■■□□□ 1.01
CLIC4-203ENST00000489758 ZCRB1Q8TBF4 217 aaKnown RBP21.39■■□□□ 1.01
CLIC4-203ENST00000489758 EXOC5O00471 708 aa21.38■■□□□ 1.01
CLIC4-203ENST00000489758 AMOTQ4VCS5 1084 aa21.38■■□□□ 1.01
CLIC4-203ENST00000489758 A0A0G2JS52 829 aa21.37■■□□□ 1.01
CLIC4-203ENST00000489758 MYT1Q01538 1121 aa21.37■■□□□ 1.01
CLIC4-203ENST00000489758 MTHFSDQ2M296 383 aaKnown RBP21.37■■□□□ 1.01
CLIC4-203ENST00000489758 PLEKHO1Q53GL0 409 aaPredicted RBP21.37■■□□□ 1.01
CLIC4-203ENST00000489758 CCDC146Q8IYE0 955 aa21.37■■□□□ 1.01
CLIC4-203ENST00000489758 PNNQ9H307 717 aaKnown RBP21.37■■□□□ 1.01
CLIC4-203ENST00000489758 SPG7Q9UQ90 795 aa21.37■■□□□ 1.01
CLIC4-203ENST00000489758 PKD1L3Q7Z443 1732 aa21.37■■□□□ 1.01
CLIC4-203ENST00000489758 RUNDC1Q96C34 613 aa21.36■■□□□ 1.01
CLIC4-203ENST00000489758 CYP27B1O15528 508 aa21.35■■□□□ 1.01
CLIC4-203ENST00000489758 PCDH11XQ9BZA7 1347 aa21.34■■□□□ 1.01
CLIC4-203ENST00000489758 PCDH11YQ9BZA8 1340 aa21.34■■□□□ 1.01
CLIC4-203ENST00000489758 MARCH10Q8NA82 808 aaPredicted RBP21.34■■□□□ 1.01
CLIC4-203ENST00000489758 SHANK3Q9BYB0 1731 aa21.33■■□□□ 1.01
CLIC4-203ENST00000489758 MAPK8IP3Q9UPT6 1336 aa21.32■■□□□ 1
CLIC4-203ENST00000489758 PHKG2P15735 406 aa21.32■■□□□ 1
CLIC4-203ENST00000489758 ZNF530Q6P9A1 599 aaPredicted RBP21.32■■□□□ 1
CLIC4-203ENST00000489758 GAS2L2Q8NHY3 880 aa21.32■■□□□ 1
CLIC4-203ENST00000489758 DDX54Q8TDD1 881 aaKnown RBP21.32■■□□□ 1
CLIC4-203ENST00000489758 PDE3BQ13370 1112 aa21.31■■□□□ 1
CLIC4-203ENST00000489758 KRT27Q7Z3Y8 459 aa21.31■■□□□ 1
CLIC4-203ENST00000489758 NFE2L2Q16236 605 aa21.3■■□□□ 1
CLIC4-203ENST00000489758 IFNL2Q8IZJ0 200 aa21.3■■□□□ 1
CLIC4-203ENST00000489758 NEFMP07197 916 aa21.29■■□□□ 1
CLIC4-203ENST00000489758 NKX1-1Q15270 411 aaPredicted RBP21.29■■□□□ 1
CLIC4-203ENST00000489758 AKAP4Q5JQC9 854 aa21.29■■□□□ 1
CLIC4-203ENST00000489758 APAF1O14727 1248 aa21.28■■□□□ 1
CLIC4-203ENST00000489758 TMPOP42166 694 aaKnown RBP21.28■■□□□ 1
CLIC4-203ENST00000489758 BCL9O00512 1426 aa21.28■■□□□ 1
CLIC4-203ENST00000489758 MAP3K5Q99683 1374 aa21.27■■□□□ 1
CLIC4-203ENST00000489758 C1orf141Q5JVX7 400 aa21.27■■□□□ 1
CLIC4-203ENST00000489758 FAM182BQ5T319 152 aa21.27■■□□□ 1
CLIC4-203ENST00000489758 RRP7AQ9Y3A4 280 aaKnown RBP21.26■□□□□ 0.99
CLIC4-203ENST00000489758 KDM6AO15550 1401 aaPredicted RBP21.26■□□□□ 0.99
CLIC4-203ENST00000489758 GNAT3A8MTJ3 354 aa21.25■□□□□ 0.99
CLIC4-203ENST00000489758 BRWD3Q6RI45 1802 aa21.25■□□□□ 0.99
CLIC4-203ENST00000489758 HSP90AB1P08238 724 aaKnown RBP21.23■□□□□ 0.99
CLIC4-203ENST00000489758 RIPK4P57078 832 aa21.23■□□□□ 0.99
CLIC4-203ENST00000489758 MPRIPQ6WCQ1 1025 aa21.23■□□□□ 0.99
CLIC4-203ENST00000489758 DCAF5Q96JK2 942 aa21.23■□□□□ 0.99
CLIC4-203ENST00000489758 SENP3-EIF4A1A0A087X0R7 540 aa21.22■□□□□ 0.99
CLIC4-203ENST00000489758 HTATSF1O43719 755 aaKnown RBP21.22■□□□□ 0.99
CLIC4-203ENST00000489758 IL17REQ8NFR9 667 aa21.22■□□□□ 0.99
CLIC4-203ENST00000489758 LGR6Q9HBX8 967 aa21.22■□□□□ 0.99
CLIC4-203ENST00000489758 TRIM35Q9UPQ4 493 aa21.22■□□□□ 0.99
CLIC4-203ENST00000489758 ADAMTS7Q9UKP4 1686 aa21.21■□□□□ 0.99
CLIC4-203ENST00000489758 RNMTO43148 476 aaKnown RBP21.21■□□□□ 0.99
CLIC4-203ENST00000489758 NEUROD2Q15784 382 aa21.21■□□□□ 0.99
CLIC4-203ENST00000489758 FAM196AQ6ZSG2 479 aa21.21■□□□□ 0.99
CLIC4-203ENST00000489758 CEMIPQ8WUJ3 1361 aa21.21■□□□□ 0.99
CLIC4-203ENST00000489758 NCBP3Q53F19 620 aaKnown RBP21.2■□□□□ 0.98
CLIC4-203ENST00000489758 DCTN1Q14203 1278 aa21.19■□□□□ 0.98
CLIC4-203ENST00000489758 MCM10Q7L590 875 aa21.19■□□□□ 0.98
CLIC4-203ENST00000489758 TOGARAM1Q9Y4F4 1720 aa21.18■□□□□ 0.98
CLIC4-203ENST00000489758 CCDC27Q2M243 656 aa21.18■□□□□ 0.98
CLIC4-203ENST00000489758 RTF1Q92541 710 aaKnown RBP21.18■□□□□ 0.98
CLIC4-203ENST00000489758 MRC1P22897 1456 aa21.18■□□□□ 0.98
CLIC4-203ENST00000489758 ERVV-2B6SEH9 535 aa21.17■□□□□ 0.98
CLIC4-203ENST00000489758 LMOD3Q0VAK6 560 aa21.17■□□□□ 0.98
CLIC4-203ENST00000489758 ACSBG1Q96GR2 724 aa21.17■□□□□ 0.98
CLIC4-203ENST00000489758 THUMPD2Q9BTF0 503 aaKnown RBP21.17■□□□□ 0.98
CLIC4-203ENST00000489758 KCNQ2O43526 872 aa21.16■□□□□ 0.98
CLIC4-203ENST00000489758 PRIM1P49642 420 aaKnown RBP21.16■□□□□ 0.98
CLIC4-203ENST00000489758 PTF1AQ7RTS3 328 aa21.16■□□□□ 0.98
CLIC4-203ENST00000489758 NGEFQ8N5V2 710 aa21.15■□□□□ 0.98
CLIC4-203ENST00000489758 CCDC125Q86Z20 511 aa21.14■□□□□ 0.97
CLIC4-203ENST00000489758 WWC1Q8IX03 1113 aa21.14■□□□□ 0.97
CLIC4-203ENST00000489758 SLC52A2Q9HAB3 445 aa21.14■□□□□ 0.97
CLIC4-203ENST00000489758 DOT1LQ8TEK3 1739 aa21.14■□□□□ 0.97
CLIC4-203ENST00000489758 SALL2Q9Y467 1007 aaPredicted RBP21.13■□□□□ 0.97
CLIC4-203ENST00000489758 NHSQ6T4R5 1651 aa21.12■□□□□ 0.97
CLIC4-203ENST00000489758 ZNF521Q96K83 1311 aa21.12■□□□□ 0.97
CLIC4-203ENST00000489758 CABP4P57796 275 aa21.12■□□□□ 0.97
CLIC4-203ENST00000489758 NFATC2IPQ8NCF5 419 aa21.12■□□□□ 0.97
CLIC4-203ENST00000489758 PIGBQ92521 554 aa21.12■□□□□ 0.97
CLIC4-203ENST00000489758 BCL11BQ9C0K0 894 aaPredicted RBP21.12■□□□□ 0.97
CLIC4-203ENST00000489758 DLG5Q8TDM6 1919 aa21.12■□□□□ 0.97
CLIC4-203ENST00000489758 SCN11AQ9UI33 1791 aa21.11■□□□□ 0.97
CLIC4-203ENST00000489758 TRIM37O94972 964 aa21.11■□□□□ 0.97
CLIC4-203ENST00000489758 SYTL4Q96C24 671 aaPredicted RBP21.11■□□□□ 0.97
CLIC4-203ENST00000489758 TMOD3Q9NYL9 352 aa21.11■□□□□ 0.97
CLIC4-203ENST00000489758 HNRNPUQ00839 825 aaKnown RBP eCLIP21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms