RNA–Protein interactions for RNA: ENST00000489758.1

CLIC4-203, Transcript of chloride intracellular channel 4, humanhuman

TSL 2

Gene CLIC4, Length 439 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-203ENST00000489758 NISCHQ9Y2I1 1504 aa38.35■■■■□ 3.73
CLIC4-203ENST00000489758 CCDC180Q9P1Z9 1646 aa33.81■■■■□ 3
CLIC4-203ENST00000489758 ABCC9O60706 1549 aa32.67■■■□□ 2.82
CLIC4-203ENST00000489758 ZCCHC6Q5VYS8 1495 aaKnown RBP32.06■■■□□ 2.72
CLIC4-203ENST00000489758 DCAF8L2P0C7V8 631 aa31.77■■■□□ 2.68
CLIC4-203ENST00000489758 DCAF1Q9Y4B6 1507 aa31.75■■■□□ 2.67
CLIC4-203ENST00000489758 MYO15BQ96JP2 1530 aa31.71■■■□□ 2.67
CLIC4-203ENST00000489758 NACADO15069 1562 aa31.71■■■□□ 2.67
CLIC4-203ENST00000489758 RB1CC1Q8TDY2 1594 aa31.6■■■□□ 2.65
CLIC4-203ENST00000489758 SCRIBQ14160 1630 aa30.91■■■□□ 2.54
CLIC4-203ENST00000489758 UNC13AQ9UPW8 1703 aa30.82■■■□□ 2.52
CLIC4-203ENST00000489758 BICRAQ9NZM4 1560 aa30.69■■■□□ 2.5
CLIC4-203ENST00000489758 PABPN1Q86U42 306 aaKnown RBP eCLIP30.63■■■□□ 2.49
CLIC4-203ENST00000489758 SHROOM4Q9ULL8 1493 aa30.57■■■□□ 2.48
CLIC4-203ENST00000489758 DNAJC5BQ9UF47 199 aa30.37■■■□□ 2.45
CLIC4-203ENST00000489758 CECR2Q9BXF3 1484 aa29.85■■■□□ 2.37
CLIC4-203ENST00000489758 EIF4G1Q04637 1599 aaKnown RBP29.81■■■□□ 2.36
CLIC4-203ENST00000489758 BAZ1AQ9NRL2 1556 aaPredicted RBP29.66■■■□□ 2.34
CLIC4-203ENST00000489758 SMARCA4P51532 1647 aa29.62■■■□□ 2.33
CLIC4-203ENST00000489758 MROH2BQ7Z745 1585 aa29.57■■■□□ 2.32
CLIC4-203ENST00000489758 CC2D2AQ9P2K1 1620 aa29.56■■■□□ 2.32
CLIC4-203ENST00000489758 RSF1Q96T23 1441 aaPredicted RBP29.43■■■□□ 2.3
CLIC4-203ENST00000489758 ATAD2BQ9ULI0 1458 aa29.38■■■□□ 2.29
CLIC4-203ENST00000489758 PEG3Q9GZU2 1588 aa29.36■■■□□ 2.29
CLIC4-203ENST00000489758 SMARCA2P51531 1590 aa29.32■■■□□ 2.28
CLIC4-203ENST00000489758 NCAPD3P42695 1498 aa29.29■■■□□ 2.28
CLIC4-203ENST00000489758 WIZO95785 1651 aa29.23■■■□□ 2.27
CLIC4-203ENST00000489758 HMGXB3Q12766 1538 aa29.16■■■□□ 2.26
CLIC4-203ENST00000489758 BAZ1BQ9UIG0 1483 aaKnown RBP29.12■■■□□ 2.25
CLIC4-203ENST00000489758 SUPT5HO00267 1087 aaKnown RBP28.99■■■□□ 2.23
CLIC4-203ENST00000489758 TOP2AP11388 1531 aaKnown RBP28.98■■■□□ 2.23
CLIC4-203ENST00000489758 CCDC88BA6NC98 1476 aa28.66■■■□□ 2.18
CLIC4-203ENST00000489758 CADPSQ9ULU8 1353 aa28.46■■■□□ 2.15
CLIC4-203ENST00000489758 NESP48681 1621 aa28.43■■■□□ 2.14
CLIC4-203ENST00000489758 CFTRP13569 1480 aa28.4■■■□□ 2.14
CLIC4-203ENST00000489758 LAMC3Q9Y6N6 1575 aa28.38■■■□□ 2.13
CLIC4-203ENST00000489758 PDS5BQ9NTI5 1447 aa28.19■■■□□ 2.1
CLIC4-203ENST00000489758 FANCD2Q9BXW9 1451 aa28.12■■■□□ 2.09
CLIC4-203ENST00000489758 ERCC6Q03468 1493 aa28.08■■■□□ 2.09
CLIC4-203ENST00000489758 PRDM2Q13029 1718 aa28.06■■■□□ 2.08
CLIC4-203ENST00000489758 KIF21AQ7Z4S6 1674 aa28.03■■■□□ 2.08
CLIC4-203ENST00000489758 CEP164Q9UPV0 1460 aa28.02■■■□□ 2.08
CLIC4-203ENST00000489758 CUX2O14529 1486 aa27.92■■■□□ 2.06
CLIC4-203ENST00000489758 DNAJC5Q9H3Z4 198 aa27.91■■■□□ 2.06
CLIC4-203ENST00000489758 MRC2Q9UBG0 1479 aa27.89■■■□□ 2.06
CLIC4-203ENST00000489758 THOC2Q8NI27 1593 aaKnown RBP27.88■■■□□ 2.05
CLIC4-203ENST00000489758 URB2Q14146 1524 aaKnown RBP27.83■■■□□ 2.05
CLIC4-203ENST00000489758 WDR62O43379 1518 aa27.79■■■□□ 2.04
CLIC4-203ENST00000489758 ABCC8Q09428 1581 aa27.73■■■□□ 2.03
CLIC4-203ENST00000489758 TOPBP1Q92547 1522 aa27.72■■■□□ 2.03
CLIC4-203ENST00000489758 CUX1P39880 1505 aa27.72■■■□□ 2.03
CLIC4-203ENST00000489758 DNMBPQ6XZF7 1577 aa27.71■■■□□ 2.03
CLIC4-203ENST00000489758 WRNQ14191 1432 aaPredicted RBP eCLIP27.7■■■□□ 2.03
CLIC4-203ENST00000489758 SYNJ1O43426 1573 aa27.6■■■□□ 2.01
CLIC4-203ENST00000489758 TOP2BQ02880 1626 aa27.57■■■□□ 2
CLIC4-203ENST00000489758 BIVM-ERCC5R4GMW8 1640 aa27.55■■■□□ 2
CLIC4-203ENST00000489758 POLA1P09884 1462 aaPredicted RBP27.53■■■□□ 2
CLIC4-203ENST00000489758 FGD5Q6ZNL6 1462 aa27.52■■■□□ 2
CLIC4-203ENST00000489758 IFT140Q96RY7 1462 aa27.42■■□□□ 1.98
CLIC4-203ENST00000489758 SOGA1O94964 1423 aa27.41■■□□□ 1.98
CLIC4-203ENST00000489758 RAD54L2Q9Y4B4 1467 aa27.41■■□□□ 1.98
CLIC4-203ENST00000489758 TARBP1Q13395 1621 aaKnown RBP27.38■■□□□ 1.97
CLIC4-203ENST00000489758 CHIC1Q5VXU3 224 aa27.38■■□□□ 1.97
CLIC4-203ENST00000489758 TRIM41Q8WV44 630 aa27.35■■□□□ 1.97
CLIC4-203ENST00000489758 ABCA10Q8WWZ4 1543 aa27.29■■□□□ 1.96
CLIC4-203ENST00000489758 ZNF608Q9ULD9 1512 aaPredicted RBP27.29■■□□□ 1.96
CLIC4-203ENST00000489758 WDR97A6NE52 1622 aa27.24■■□□□ 1.95
CLIC4-203ENST00000489758 TDRD9Q8NDG6 1382 aaKnown RBP27.22■■□□□ 1.95
CLIC4-203ENST00000489758 AQRO60306 1485 aaKnown RBP eCLIP27.19■■□□□ 1.94
CLIC4-203ENST00000489758 EIF4G3O43432 1585 aaKnown RBP27.15■■□□□ 1.94
CLIC4-203ENST00000489758 ABCA5Q8WWZ7 1642 aa27.13■■□□□ 1.93
CLIC4-203ENST00000489758 GAPVD1Q14C86 1478 aa27.1■■□□□ 1.93
CLIC4-203ENST00000489758 KIF27Q86VH2 1401 aa27.07■■□□□ 1.92
CLIC4-203ENST00000489758 GRIN2BQ13224 1484 aa27.03■■□□□ 1.92
CLIC4-203ENST00000489758 RUSC2Q8N2Y8 1516 aa27.02■■□□□ 1.92
CLIC4-203ENST00000489758 ERICH3Q5RHP9 1530 aa26.95■■□□□ 1.91
CLIC4-203ENST00000489758 IGF1RP08069 1367 aa26.95■■□□□ 1.9
CLIC4-203ENST00000489758 PBRM1Q86U86 1689 aa26.94■■□□□ 1.9
CLIC4-203ENST00000489758 SNAPC4Q5SXM2 1469 aa26.93■■□□□ 1.9
CLIC4-203ENST00000489758 MAGI1Q96QZ7 1491 aaPredicted RBP26.91■■□□□ 1.9
CLIC4-203ENST00000489758 EEA1Q15075 1411 aa26.87■■□□□ 1.89
CLIC4-203ENST00000489758 ADAMTS12P58397 1594 aa26.83■■□□□ 1.89
CLIC4-203ENST00000489758 FHAD1B1AJZ9 1412 aa26.82■■□□□ 1.88
CLIC4-203ENST00000489758 SYNJ2O15056 1496 aa26.81■■□□□ 1.88
CLIC4-203ENST00000489758 CSRNP3Q8WYN3 585 aa26.78■■□□□ 1.88
CLIC4-203ENST00000489758 FAM9AQ8IZU1 332 aaPredicted RBP26.77■■□□□ 1.88
CLIC4-203ENST00000489758 CUL7Q14999 1698 aa26.76■■□□□ 1.87
CLIC4-203ENST00000489758 CARMIL1Q5VZK9 1371 aa26.76■■□□□ 1.87
CLIC4-203ENST00000489758 CHMP7Q8WUX9 453 aaPredicted RBP26.72■■□□□ 1.87
CLIC4-203ENST00000489758 PRXQ9BXM0 1461 aa26.72■■□□□ 1.87
CLIC4-203ENST00000489758 OSCARQ8IYS5 282 aa26.71■■□□□ 1.87
CLIC4-203ENST00000489758 FBLN2P98095 1184 aa26.7■■□□□ 1.86
CLIC4-203ENST00000489758 GRIN2AQ12879 1464 aa26.69■■□□□ 1.86
CLIC4-203ENST00000489758 CHD1O14646 1710 aa26.65■■□□□ 1.86
CLIC4-203ENST00000489758 RAPGEF2Q9Y4G8 1499 aa26.65■■□□□ 1.86
CLIC4-203ENST00000489758 NUP160Q12769 1436 aa26.58■■□□□ 1.85
CLIC4-203ENST00000489758 CEP170Q5SW79 1584 aa26.54■■□□□ 1.84
CLIC4-203ENST00000489758 KIF21BO75037 1637 aa26.54■■□□□ 1.84
CLIC4-203ENST00000489758 CLASP1Q7Z460 1538 aa26.48■■□□□ 1.83
CLIC4-203ENST00000489758 GOLGA3Q08378 1498 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms