RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 POLKQ9UBT6 870 aa12.41□□□□□ -0.42
HDAC6-232ENST00000489053 SPG7Q9UQ90 795 aa12.41□□□□□ -0.42
HDAC6-232ENST00000489053 PEAK1Q9H792 1746 aa12.4□□□□□ -0.42
HDAC6-232ENST00000489053 CNGB1Q14028 1251 aaPredicted RBP12.4□□□□□ -0.42
HDAC6-232ENST00000489053 PPP1R1BQ9UD71 204 aaPredicted RBP12.4□□□□□ -0.42
HDAC6-232ENST00000489053 MEGF6O75095 1541 aa12.4□□□□□ -0.42
HDAC6-232ENST00000489053 PRIM1P49642 420 aaKnown RBP12.39□□□□□ -0.43
HDAC6-232ENST00000489053 HMGB2P26583 209 aaKnown RBP12.38□□□□□ -0.43
HDAC6-232ENST00000489053 EIF4A2Q14240 407 aaKnown RBP12.37□□□□□ -0.43
HDAC6-232ENST00000489053 CC2D1BQ5T0F9 858 aaKnown RBP12.37□□□□□ -0.43
HDAC6-232ENST00000489053 EYA1Q99502 592 aa12.37□□□□□ -0.43
HDAC6-232ENST00000489053 SLC27A3Q5K4L6 730 aa12.36□□□□□ -0.43
HDAC6-232ENST00000489053 SPON1Q9HCB6 807 aa12.36□□□□□ -0.43
HDAC6-232ENST00000489053 MPRIPQ6WCQ1 1025 aa12.35□□□□□ -0.43
HDAC6-232ENST00000489053 NHSQ6T4R5 1651 aa12.35□□□□□ -0.43
HDAC6-232ENST00000489053 DCAF8L1A6NGE4 600 aa12.34□□□□□ -0.43
HDAC6-232ENST00000489053 SLC15A2Q16348 729 aa12.34□□□□□ -0.43
HDAC6-232ENST00000489053 PLEKHO1Q53GL0 409 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-232ENST00000489053 AMER1Q5JTC6 1135 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-232ENST00000489053 ANO8Q9HCE9 1232 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-232ENST00000489053 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.34□□□□□ -0.436e-7■□□□□ 10.3
HDAC6-232ENST00000489053 CCNL1Q9UK58 526 aaPredicted RBP12.34□□□□□ -0.43
HDAC6-232ENST00000489053 RREB1Q92766 1687 aa12.34□□□□□ -0.43
HDAC6-232ENST00000489053 RGPD3A6NKT7 1758 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-232ENST00000489053 RGPD4Q7Z3J3 1758 aa12.33□□□□□ -0.44
HDAC6-232ENST00000489053 KAT6BQ8WYB5 2073 aa12.33□□□□□ -0.44
HDAC6-232ENST00000489053 C1orf141Q5JVX7 400 aa12.33□□□□□ -0.44
HDAC6-232ENST00000489053 IFNL2Q8IZJ0 200 aa12.33□□□□□ -0.44
HDAC6-232ENST00000489053 PROM2Q8N271 834 aa12.33□□□□□ -0.44
HDAC6-232ENST00000489053 SMARCC1Q92922 1105 aaPredicted RBP12.33□□□□□ -0.44
HDAC6-232ENST00000489053 TMOD3Q9NYL9 352 aa12.33□□□□□ -0.44
HDAC6-232ENST00000489053 NUP188Q5SRE5 1749 aa12.33□□□□□ -0.44
HDAC6-232ENST00000489053 SBF2Q86WG5 1849 aa12.32□□□□□ -0.44
HDAC6-232ENST00000489053 ANKRD26Q9UPS8 1709 aa12.32□□□□□ -0.44
HDAC6-232ENST00000489053 CYP27B1O15528 508 aa12.32□□□□□ -0.44
HDAC6-232ENST00000489053 ZBTB7AO95365 584 aa12.32□□□□□ -0.44
HDAC6-232ENST00000489053 HSP90AB1P08238 724 aaKnown RBP12.32□□□□□ -0.44
HDAC6-232ENST00000489053 AMOTQ4VCS5 1084 aa12.32□□□□□ -0.44
HDAC6-232ENST00000489053 TFCP2L1Q9NZI6 479 aa12.32□□□□□ -0.44
HDAC6-232ENST00000489053 MSH5O43196 834 aa12.31□□□□□ -0.44
HDAC6-232ENST00000489053 MTHFSP49914 203 aa12.31□□□□□ -0.44
HDAC6-232ENST00000489053 SULT6B1Q6IMI4 303 aa12.31□□□□□ -0.44
HDAC6-232ENST00000489053 ZNF530Q6P9A1 599 aaPredicted RBP12.31□□□□□ -0.44
HDAC6-232ENST00000489053 CFAP53Q96M91 514 aa12.31□□□□□ -0.44
HDAC6-232ENST00000489053 IGSF1Q8N6C5 1336 aa12.31□□□□□ -0.44
HDAC6-232ENST00000489053 RGPD2P0DJD1 1756 aa12.3□□□□□ -0.44
HDAC6-232ENST00000489053 LRP5O75197 1615 aa12.3□□□□□ -0.44
HDAC6-232ENST00000489053 PLEKHG2Q9H7P9 1386 aa12.3□□□□□ -0.44
HDAC6-232ENST00000489053 DIAPH1O60610 1272 aaKnown RBP12.29□□□□□ -0.44
HDAC6-232ENST00000489053 PHKG2P15735 406 aa12.29□□□□□ -0.44
HDAC6-232ENST00000489053 MTFR1LQ9H019 292 aa12.29□□□□□ -0.44
HDAC6-232ENST00000489053 ATF5Q9Y2D1 282 aaPredicted RBP12.29□□□□□ -0.44
HDAC6-232ENST00000489053 MAP2P11137 1827 aaKnown RBP12.29□□□□□ -0.44
HDAC6-232ENST00000489053 PALLDQ8WX93 1383 aa12.29□□□□□ -0.44
HDAC6-232ENST00000489053 BTAF1O14981 1849 aa12.28□□□□□ -0.44
HDAC6-232ENST00000489053 U2SURPO15042 1029 aaKnown RBP12.28□□□□□ -0.44
HDAC6-232ENST00000489053 POLD1P28340 1107 aa12.28□□□□□ -0.44
HDAC6-232ENST00000489053 KCNQ4P56696 695 aa12.28□□□□□ -0.44
HDAC6-232ENST00000489053 NKX1-1Q15270 411 aaPredicted RBP12.28□□□□□ -0.44
HDAC6-232ENST00000489053 DCAF5Q96JK2 942 aa12.28□□□□□ -0.44
HDAC6-232ENST00000489053 LRRC4BQ9NT99 713 aa12.28□□□□□ -0.44
HDAC6-232ENST00000489053 DOT1LQ8TEK3 1739 aa12.28□□□□□ -0.44
HDAC6-232ENST00000489053 NCAPD2Q15021 1401 aa12.28□□□□□ -0.44
HDAC6-232ENST00000489053 PER1O15534 1290 aaPredicted RBP12.27□□□□□ -0.45
HDAC6-232ENST00000489053 IL13P35225 146 aa12.27□□□□□ -0.45
HDAC6-232ENST00000489053 CABP4P57796 275 aa12.27□□□□□ -0.45
HDAC6-232ENST00000489053 ZNF827Q17R98 1081 aa12.27□□□□□ -0.45
HDAC6-232ENST00000489053 AEBP1Q8IUX7 1158 aa12.27□□□□□ -0.45
HDAC6-232ENST00000489053 AK7Q96M32 723 aa12.27□□□□□ -0.45
HDAC6-232ENST00000489053 NPC1L1Q9UHC9 1359 aa12.27□□□□□ -0.45
HDAC6-232ENST00000489053 HMOX1P09601 288 aa12.26□□□□□ -0.45
HDAC6-232ENST00000489053 PIGBQ92521 554 aa12.26□□□□□ -0.45
HDAC6-232ENST00000489053 NUDCQ9Y266 331 aa12.26□□□□□ -0.45
HDAC6-232ENST00000489053 ERVV-2B6SEH9 535 aa12.25□□□□□ -0.45
HDAC6-232ENST00000489053 KLHL34Q8N239 644 aa12.25□□□□□ -0.45
HDAC6-232ENST00000489053 FLAD1Q8NFF5 587 aa12.25□□□□□ -0.45
HDAC6-232ENST00000489053 SLC16A10Q8TF71 515 aa12.24□□□□□ -0.45
HDAC6-232ENST00000489053 AKT1S1Q96B36 256 aa12.24□□□□□ -0.45
HDAC6-232ENST00000489053 PDGFDQ9GZP0 370 aaPredicted RBP12.24□□□□□ -0.45
HDAC6-232ENST00000489053 PKD1L3Q7Z443 1732 aa12.23□□□□□ -0.45
HDAC6-232ENST00000489053 LOC102724428A0A0B4J2F2 783 aa12.23□□□□□ -0.45
HDAC6-232ENST00000489053 ATP6V1AP38606 617 aa12.23□□□□□ -0.45
HDAC6-232ENST00000489053 SIK1P57059 783 aa12.23□□□□□ -0.45
HDAC6-232ENST00000489053 RBM42Q9BTD8 480 aaKnown RBP12.23□□□□□ -0.45
HDAC6-232ENST00000489053 SHANK3Q9BYB0 1731 aa12.23□□□□□ -0.45
HDAC6-232ENST00000489053 KDRP35968 1356 aa12.22□□□□□ -0.45
HDAC6-232ENST00000489053 NEFMP07197 916 aa12.22□□□□□ -0.45
HDAC6-232ENST00000489053 ARXQ96QS3 562 aa12.22□□□□□ -0.45
HDAC6-232ENST00000489053 ASAP1Q9ULH1 1129 aa12.22□□□□□ -0.45
HDAC6-232ENST00000489053 PNPLA7Q6ZV29 1317 aa12.21□□□□□ -0.45
HDAC6-232ENST00000489053 PHF14O94880 888 aa12.21□□□□□ -0.45
HDAC6-232ENST00000489053 AKAP4Q5JQC9 854 aa12.21□□□□□ -0.45
HDAC6-232ENST00000489053 GNPATO15228 680 aa12.19□□□□□ -0.46
HDAC6-232ENST00000489053 PTCD1O75127 700 aaKnown RBP12.19□□□□□ -0.46
HDAC6-232ENST00000489053 U2AF1L5P0DN76 240 aaPredicted RBP12.19□□□□□ -0.46
HDAC6-232ENST00000489053 PPP2R1AP30153 589 aa12.19□□□□□ -0.46
HDAC6-232ENST00000489053 PTGER2P43116 358 aa12.19□□□□□ -0.46
HDAC6-232ENST00000489053 U2AF1Q01081 240 aaKnown RBP eCLIP12.19□□□□□ -0.46
HDAC6-232ENST00000489053 NFATC2IPQ8NCF5 419 aa12.19□□□□□ -0.46
HDAC6-232ENST00000489053 GAS2L2Q8NHY3 880 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms