RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 LRRC4BQ9NT99 713 aa25.77■■□□□ 1.72
HDAC6-231ENST00000488905 CDCA8Q53HL2 280 aa25.75■■□□□ 1.71
HDAC6-231ENST00000488905 SGIP1Q9BQI5 828 aa25.75■■□□□ 1.71
HDAC6-231ENST00000488905 COL24A1Q17RW2 1714 aa25.74■■□□□ 1.71
HDAC6-231ENST00000488905 NSD2O96028 1365 aa25.74■■□□□ 1.71
HDAC6-231ENST00000488905 ANKRD26Q9UPS8 1709 aa25.74■■□□□ 1.71
HDAC6-231ENST00000488905 SLC27A3Q5K4L6 730 aa25.73■■□□□ 1.71
HDAC6-231ENST00000488905 ZCRB1Q8TBF4 217 aaKnown RBP25.73■■□□□ 1.71
HDAC6-231ENST00000488905 SYTL4Q96C24 671 aaPredicted RBP25.72■■□□□ 1.71
HDAC6-231ENST00000488905 FLT4P35916 1363 aa25.71■■□□□ 1.71
HDAC6-231ENST00000488905 NBPF6Q5VWK0 638 aa25.71■■□□□ 1.71
HDAC6-231ENST00000488905 NBPF4Q96M43 638 aa25.71■■□□□ 1.71
HDAC6-231ENST00000488905 FHDC1Q9C0D6 1143 aaPredicted RBP25.71■■□□□ 1.71
HDAC6-231ENST00000488905 GOLGB1Q14789 3259 aaKnown RBP25.71■■□□□ 1.71
HDAC6-231ENST00000488905 CHD4Q14839 1912 aa25.71■■□□□ 1.71
HDAC6-231ENST00000488905 INSRP06213 1382 aa25.7■■□□□ 1.71
HDAC6-231ENST00000488905 KIF24Q5T7B8 1368 aa25.7■■□□□ 1.71
HDAC6-231ENST00000488905 CGNL1Q0VF96 1302 aa25.7■■□□□ 1.71
HDAC6-231ENST00000488905 PRIM1P49642 420 aaKnown RBP25.7■■□□□ 1.7
HDAC6-231ENST00000488905 USHBP1Q8N6Y0 703 aa25.7■■□□□ 1.7
HDAC6-231ENST00000488905 AKT1S1Q96B36 256 aa25.7■■□□□ 1.7
HDAC6-231ENST00000488905 NSD3Q9BZ95 1437 aa25.7■■□□□ 1.7
HDAC6-231ENST00000488905 PKD1L3Q7Z443 1732 aa25.69■■□□□ 1.7
HDAC6-231ENST00000488905 SYT17Q9BSW7 474 aa25.68■■□□□ 1.7
HDAC6-231ENST00000488905 RAPGEF4Q8WZA2 1011 aa25.67■■□□□ 1.7
HDAC6-231ENST00000488905 MAP2P11137 1827 aaKnown RBP25.67■■□□□ 1.7
HDAC6-231ENST00000488905 C5P01031 1676 aa25.67■■□□□ 1.7
HDAC6-231ENST00000488905 MAP3K5Q99683 1374 aa25.67■■□□□ 1.7
HDAC6-231ENST00000488905 TOGARAM1Q9Y4F4 1720 aa25.66■■□□□ 1.7
HDAC6-231ENST00000488905 HSP90AB2PQ58FF8 381 aa25.66■■□□□ 1.7
HDAC6-231ENST00000488905 ARXQ96QS3 562 aa25.66■■□□□ 1.7
HDAC6-231ENST00000488905 ITGB4P16144 1822 aa25.65■■□□□ 1.7
HDAC6-231ENST00000488905 TAF1LQ8IZX4 1826 aa25.65■■□□□ 1.7
HDAC6-231ENST00000488905 PNPLA7Q6ZV29 1317 aa25.64■■□□□ 1.7
HDAC6-231ENST00000488905 CARD14Q9BXL6 1004 aa25.64■■□□□ 1.7
HDAC6-231ENST00000488905 TIMELESSQ9UNS1 1208 aa25.64■■□□□ 1.7
HDAC6-231ENST00000488905 TATP17735 454 aaPredicted RBP25.63■■□□□ 1.69
HDAC6-231ENST00000488905 KCNQ4P56696 695 aa25.63■■□□□ 1.69
HDAC6-231ENST00000488905 PCDH11XQ9BZA7 1347 aa25.63■■□□□ 1.69
HDAC6-231ENST00000488905 PCDH11YQ9BZA8 1340 aa25.63■■□□□ 1.69
HDAC6-231ENST00000488905 SLC16A10Q8TF71 515 aa25.62■■□□□ 1.69
HDAC6-231ENST00000488905 TFCP2L1Q9NZI6 479 aa25.61■■□□□ 1.69
HDAC6-231ENST00000488905 NCAPD2Q15021 1401 aa25.61■■□□□ 1.69
HDAC6-231ENST00000488905 CLSPNQ9HAW4 1339 aa25.61■■□□□ 1.69
HDAC6-231ENST00000488905 CCNL1Q9UK58 526 aaPredicted RBP25.6■■□□□ 1.69
HDAC6-231ENST00000488905 EMILIN1Q9Y6C2 1016 aa25.6■■□□□ 1.69
HDAC6-231ENST00000488905 POLD1P28340 1107 aa25.56■■□□□ 1.68
HDAC6-231ENST00000488905 CYP27B1O15528 508 aa25.54■■□□□ 1.68
HDAC6-231ENST00000488905 PALLDQ8WX93 1383 aa25.53■■□□□ 1.68
HDAC6-231ENST00000488905 C4BP0C0L5 1744 aa25.52■■□□□ 1.68
HDAC6-231ENST00000488905 PPM1GO15355 546 aaPredicted RBP25.52■■□□□ 1.68
HDAC6-231ENST00000488905 KLHL34Q8N239 644 aa25.51■■□□□ 1.67
HDAC6-231ENST00000488905 UBR3Q6ZT12 1888 aa25.51■■□□□ 1.67
HDAC6-231ENST00000488905 WASHC2AQ641Q2 1341 aa25.5■■□□□ 1.67
HDAC6-231ENST00000488905 PCGF6Q9BYE7 350 aa25.5■■□□□ 1.67
HDAC6-231ENST00000488905 MPRIPQ6WCQ1 1025 aa25.49■■□□□ 1.67
HDAC6-231ENST00000488905 COL23A1Q86Y22 540 aaPredicted RBP25.47■■□□□ 1.67
HDAC6-231ENST00000488905 ZNF784Q8NCA9 323 aaPredicted RBP25.47■■□□□ 1.67
HDAC6-231ENST00000488905 POLR3GLQ9BT43 218 aa25.47■■□□□ 1.67
HDAC6-231ENST00000488905 MSH5O43196 834 aa25.46■■□□□ 1.67
HDAC6-231ENST00000488905 GPR162Q16538 588 aa25.45■■□□□ 1.66
HDAC6-231ENST00000488905 EYA1Q99502 592 aa25.45■■□□□ 1.66
HDAC6-231ENST00000488905 POLKQ9UBT6 870 aa25.45■■□□□ 1.66
HDAC6-231ENST00000488905 SPG7Q9UQ90 795 aa25.45■■□□□ 1.66
HDAC6-231ENST00000488905 HMGB2P26583 209 aaKnown RBP25.44■■□□□ 1.66
HDAC6-231ENST00000488905 NKX1-1Q15270 411 aaPredicted RBP25.44■■□□□ 1.66
HDAC6-231ENST00000488905 SMARCC1Q92922 1105 aaPredicted RBP25.44■■□□□ 1.66
HDAC6-231ENST00000488905 NLGN2Q8NFZ4 835 aa25.43■■□□□ 1.66
HDAC6-231ENST00000488905 MSL1Q68DK7 614 aa25.41■■□□□ 1.66
HDAC6-231ENST00000488905 PIGBQ92521 554 aa25.41■■□□□ 1.66
HDAC6-231ENST00000488905 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.41■■□□□ 1.66
HDAC6-231ENST00000488905 PLEKHG2Q9H7P9 1386 aa25.41■■□□□ 1.66
HDAC6-231ENST00000488905 EIF4G2P78344 907 aaKnown RBP eCLIP25.4■■□□□ 1.66
HDAC6-231ENST00000488905 FLAD1Q8NFF5 587 aa25.4■■□□□ 1.66
HDAC6-231ENST00000488905 TNNT2P45379 298 aaPredicted RBP25.39■■□□□ 1.66
HDAC6-231ENST00000488905 EIF4A2Q14240 407 aaKnown RBP25.39■■□□□ 1.66
HDAC6-231ENST00000488905 PELP1Q8IZL8 1130 aaKnown RBP25.39■■□□□ 1.66
HDAC6-231ENST00000488905 HSPA5P11021 654 aaKnown RBP25.38■■□□□ 1.65
HDAC6-231ENST00000488905 AK7Q96M32 723 aa25.38■■□□□ 1.65
HDAC6-231ENST00000488905 PHKG2P15735 406 aa25.36■■□□□ 1.65
HDAC6-231ENST00000488905 IFNL2Q8IZJ0 200 aa25.36■■□□□ 1.65
HDAC6-231ENST00000488905 TMOD3Q9NYL9 352 aa25.36■■□□□ 1.65
HDAC6-231ENST00000488905 IGSF1Q8N6C5 1336 aa25.35■■□□□ 1.65
HDAC6-231ENST00000488905 ZNF831Q5JPB2 1677 aa25.34■■□□□ 1.65
HDAC6-231ENST00000488905 LOC102724428A0A0B4J2F2 783 aa25.34■■□□□ 1.65
HDAC6-231ENST00000488905 SIK1P57059 783 aa25.34■■□□□ 1.65
HDAC6-231ENST00000488905 AMIGO3Q86WK7 504 aa25.34■■□□□ 1.65
HDAC6-231ENST00000488905 PANK3Q9H999 370 aa25.33■■□□□ 1.65
HDAC6-231ENST00000488905 COL5A3P25940 1745 aaPredicted RBP25.32■■□□□ 1.64
HDAC6-231ENST00000488905 PHF14O94880 888 aa25.31■■□□□ 1.64
HDAC6-231ENST00000488905 YBX3P16989 372 aaKnown RBP eCLIP25.31■■□□□ 1.64
HDAC6-231ENST00000488905 LINC00116Q8NCU8 138 aa25.31■■□□□ 1.64
HDAC6-231ENST00000488905 ASAP1Q9ULH1 1129 aa25.31■■□□□ 1.64
HDAC6-231ENST00000488905 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.3■■□□□ 1.64
HDAC6-231ENST00000488905 SSFA2P28290 1259 aa25.3■■□□□ 1.64
HDAC6-231ENST00000488905 CD2APQ9Y5K6 639 aa25.3■■□□□ 1.64
HDAC6-231ENST00000488905 KDRP35968 1356 aa25.29■■□□□ 1.64
HDAC6-231ENST00000488905 GRIN3BO60391 1043 aa25.27■■□□□ 1.64
HDAC6-231ENST00000488905 ITPK1Q13572 414 aa25.27■■□□□ 1.64
HDAC6-231ENST00000488905 SMIM5Q71RC9 77 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms