RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 S1PR4O95977 384 aa8.67□□□□□ -1.02
UPF3B-203ENST00000478840 AGERQ15109 404 aa8.67□□□□□ -1.02
UPF3B-203ENST00000478840 CXXC1Q9P0U4 656 aaPredicted RBP8.67□□□□□ -1.02
UPF3B-203ENST00000478840 M0R2N6 131 aa8.66□□□□□ -1.02
UPF3B-203ENST00000478840 LINC01559Q495D7 138 aa8.66□□□□□ -1.02
UPF3B-203ENST00000478840 EGFL7Q9UHF1 273 aa8.66□□□□□ -1.02
UPF3B-203ENST00000478840 RBM19Q9Y4C8 960 aaKnown RBP8.66□□□□□ -1.02
UPF3B-203ENST00000478840 RBM47A0AV96 593 aaKnown RBP8.65□□□□□ -1.02
UPF3B-203ENST00000478840 SERPINB4P48594 390 aa8.65□□□□□ -1.02
UPF3B-203ENST00000478840 SH3BP2P78314 561 aa8.65□□□□□ -1.02
UPF3B-203ENST00000478840 TPCN2Q8NHX9 752 aa8.65□□□□□ -1.02
UPF3B-203ENST00000478840 NKX2-3Q8TAU0 364 aa8.64□□□□□ -1.03
UPF3B-203ENST00000478840 MAP4K5Q9Y4K4 846 aa8.64□□□□□ -1.03
UPF3B-203ENST00000478840 PCDHB11Q9Y5F2 797 aa8.64□□□□□ -1.03
UPF3B-203ENST00000478840 SFI1A8K8P3 1242 aa8.63□□□□□ -1.03
UPF3B-203ENST00000478840 PRMT3O60678 531 aa8.62□□□□□ -1.03
UPF3B-203ENST00000478840 WEE1P30291 646 aa8.62□□□□□ -1.03
UPF3B-203ENST00000478840 NOM1Q5C9Z4 860 aaKnown RBP8.62□□□□□ -1.03
UPF3B-203ENST00000478840 ITGBL1O95965 494 aaPredicted RBP8.61□□□□□ -1.03
UPF3B-203ENST00000478840 SCNN1AP37088 669 aa8.61□□□□□ -1.03
UPF3B-203ENST00000478840 PRIMPOLQ96LW4 560 aa8.61□□□□□ -1.03
UPF3B-203ENST00000478840 KCTD15Q96SI1 283 aaPredicted RBP8.61□□□□□ -1.03
UPF3B-203ENST00000478840 VARSP26640 1264 aaKnown RBP8.6□□□□□ -1.03
UPF3B-203ENST00000478840 WNT7BP56706 349 aa8.6□□□□□ -1.03
UPF3B-203ENST00000478840 KCNC4Q03721 635 aa8.6□□□□□ -1.03
UPF3B-203ENST00000478840 PSME1Q06323 249 aa8.6□□□□□ -1.03
UPF3B-203ENST00000478840 MYCP01106 439 aaPredicted RBP8.59□□□□□ -1.03
UPF3B-203ENST00000478840 MARSP56192 900 aaKnown RBP8.59□□□□□ -1.03
UPF3B-203ENST00000478840 ICMTO60725 284 aa8.58□□□□□ -1.04
UPF3B-203ENST00000478840 TRIM32Q13049 653 aa8.58□□□□□ -1.04
UPF3B-203ENST00000478840 INTS6LQ5JSJ4 861 aaKnown RBP8.58□□□□□ -1.04
UPF3B-203ENST00000478840 COL26A1Q96A83 441 aa8.58□□□□□ -1.04
UPF3B-203ENST00000478840 UNCXA6NJT0 531 aa8.57□□□□□ -1.04
UPF3B-203ENST00000478840 WASLO00401 505 aaPredicted RBP8.57□□□□□ -1.04
UPF3B-203ENST00000478840 ZBTB24O43167 697 aaPredicted RBP8.57□□□□□ -1.04
UPF3B-203ENST00000478840 ERVK-9P63128 1117 aa8.57□□□□□ -1.04
UPF3B-203ENST00000478840 ANKLE1Q8NAG6 615 aa8.57□□□□□ -1.04
UPF3B-203ENST00000478840 HINFPQ9BQA5 517 aa8.57□□□□□ -1.04
UPF3B-203ENST00000478840 A0A0G2JS52 829 aa8.56□□□□□ -1.04
UPF3B-203ENST00000478840 ERVH48-1M5A8F1 160 aa8.56□□□□□ -1.04
UPF3B-203ENST00000478840 PTCD1O75127 700 aaKnown RBP8.56□□□□□ -1.04
UPF3B-203ENST00000478840 RGS20O76081 388 aa8.56□□□□□ -1.04
UPF3B-203ENST00000478840 SCTRP47872 440 aa8.56□□□□□ -1.04
UPF3B-203ENST00000478840 SKOR1P84550 965 aa8.56□□□□□ -1.04
UPF3B-203ENST00000478840 ECM1Q16610 540 aa8.56□□□□□ -1.04
UPF3B-203ENST00000478840 MPNDQ8N594 471 aa8.56□□□□□ -1.04
UPF3B-203ENST00000478840 TSEN2Q8NCE0 465 aaKnown RBP8.56□□□□□ -1.04
UPF3B-203ENST00000478840 TRIM52Q96A61 297 aa8.56□□□□□ -1.04
UPF3B-203ENST00000478840 CDK15Q96Q40 435 aa8.56□□□□□ -1.04
UPF3B-203ENST00000478840 BIN2Q9UBW5 565 aaPredicted RBP8.56□□□□□ -1.04
UPF3B-203ENST00000478840 RNF223E7ERA6 249 aa8.55□□□□□ -1.04
UPF3B-203ENST00000478840 C21orf2O43822 256 aa8.55□□□□□ -1.04
UPF3B-203ENST00000478840 SF3B2Q13435 895 aaKnown RBP8.55□□□□□ -1.04
UPF3B-203ENST00000478840 FKBP5Q13451 457 aaPredicted RBP8.55□□□□□ -1.04
UPF3B-203ENST00000478840 CC2D2BQ6DHV5 1058 aa8.55□□□□□ -1.04
UPF3B-203ENST00000478840 VASH1Q7L8A9 365 aaPredicted RBP8.55□□□□□ -1.04
UPF3B-203ENST00000478840 ZNF358Q9NW07 568 aa8.55□□□□□ -1.04
UPF3B-203ENST00000478840 TMEM229AB2RXF0 380 aa8.54□□□□□ -1.04
UPF3B-203ENST00000478840 PPEF1O14829 653 aaPredicted RBP8.54□□□□□ -1.04
UPF3B-203ENST00000478840 IGFBP4P22692 258 aa8.54□□□□□ -1.04
UPF3B-203ENST00000478840 RPIAP49247 311 aa8.54□□□□□ -1.04
UPF3B-203ENST00000478840 ZNF211Q13398 564 aaPredicted RBP8.54□□□□□ -1.04
UPF3B-203ENST00000478840 PLA2G2CQ5R387 149 aa8.54□□□□□ -1.04
UPF3B-203ENST00000478840 NPAS4Q8IUM7 802 aa8.54□□□□□ -1.04
UPF3B-203ENST00000478840 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.54□□□□□ -1.04
UPF3B-203ENST00000478840 GTF3C2Q8WUA4 911 aaPredicted RBP8.54□□□□□ -1.04
UPF3B-203ENST00000478840 IGSF5Q9NSI5 407 aa8.54□□□□□ -1.04
UPF3B-203ENST00000478840 H3BRB1 525 aa8.53□□□□□ -1.04
UPF3B-203ENST00000478840 FOXO3O43524 673 aa8.53□□□□□ -1.04
UPF3B-203ENST00000478840 ABL1P00519 1130 aa8.53□□□□□ -1.04
UPF3B-203ENST00000478840 SCNN1DP51172 638 aa8.53□□□□□ -1.04
UPF3B-203ENST00000478840 FKBP4Q02790 459 aaKnown RBP eCLIP8.53□□□□□ -1.04
UPF3B-203ENST00000478840 GLYCTKQ8IVS8 523 aa8.53□□□□□ -1.04
UPF3B-203ENST00000478840 OSBPL3Q9H4L5 887 aa8.53□□□□□ -1.04
UPF3B-203ENST00000478840 TUT1Q9H6E5 874 aaKnown RBP8.53□□□□□ -1.04
UPF3B-203ENST00000478840 SEPT3Q9UH03 358 aa8.53□□□□□ -1.04
UPF3B-203ENST00000478840 DNMT3AQ9Y6K1 912 aaPredicted RBP8.53□□□□□ -1.04
UPF3B-203ENST00000478840 ZNF16P17020 682 aaPredicted RBP8.52□□□□□ -1.05
UPF3B-203ENST00000478840 NPR3P17342 541 aa8.52□□□□□ -1.05
UPF3B-203ENST00000478840 EPHA4P54764 986 aa8.52□□□□□ -1.05
UPF3B-203ENST00000478840 DHX9Q08211 1270 aaKnown RBP8.52□□□□□ -1.05
UPF3B-203ENST00000478840 GAS2L2Q8NHY3 880 aa8.52□□□□□ -1.05
UPF3B-203ENST00000478840 ANKRD33BA6NCL7 494 aa8.51□□□□□ -1.05
UPF3B-203ENST00000478840 BACH1O14867 736 aa8.51□□□□□ -1.05
UPF3B-203ENST00000478840 GGCXP38435 758 aa8.51□□□□□ -1.05
UPF3B-203ENST00000478840 GRM5P41594 1212 aa8.51□□□□□ -1.05
UPF3B-203ENST00000478840 RAB15P59190 212 aa8.51□□□□□ -1.05
UPF3B-203ENST00000478840 ARHGAP4P98171 946 aa8.51□□□□□ -1.05
UPF3B-203ENST00000478840 SLC4A9Q96Q91 983 aa8.51□□□□□ -1.05
UPF3B-203ENST00000478840 PURBQ96QR8 312 aaKnown RBP8.51□□□□□ -1.05
UPF3B-203ENST00000478840 BCL2L13Q9BXK5 485 aa8.51□□□□□ -1.05
UPF3B-203ENST00000478840 KIAA1522Q9P206 1035 aaPredicted RBP8.51□□□□□ -1.05
UPF3B-203ENST00000478840 LGR5O75473 907 aa8.5□□□□□ -1.05
UPF3B-203ENST00000478840 INHAP05111 366 aa8.5□□□□□ -1.05
UPF3B-203ENST00000478840 COL19A1Q14993 1142 aa8.5□□□□□ -1.05
UPF3B-203ENST00000478840 CAPN12Q6ZSI9 719 aa8.5□□□□□ -1.05
UPF3B-203ENST00000478840 HELQQ8TDG4 1101 aa8.5□□□□□ -1.05
UPF3B-203ENST00000478840 ASB16Q96NS5 453 aa8.5□□□□□ -1.05
UPF3B-203ENST00000478840 DCTN4Q9UJW0 460 aa8.5□□□□□ -1.05
UPF3B-203ENST00000478840 GDF10P55107 478 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms