RNA–Protein interactions for RNA: ENST00000477757.5

PDLIM1-202, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 850 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-202ENST00000477757 GRIN3BO60391 1043 aa28.88■■■□□ 2.21
PDLIM1-202ENST00000477757 PRIM1P49642 420 aaKnown RBP28.88■■■□□ 2.21
PDLIM1-202ENST00000477757 SYTL4Q96C24 671 aaPredicted RBP28.88■■■□□ 2.21
PDLIM1-202ENST00000477757 TMC1Q8TDI8 760 aa28.86■■■□□ 2.21
PDLIM1-202ENST00000477757 SIN3AQ96ST3 1273 aa28.84■■■□□ 2.21
PDLIM1-202ENST00000477757 SLC12A5Q9H2X9 1139 aa28.84■■■□□ 2.21
PDLIM1-202ENST00000477757 CCNL1Q9UK58 526 aaPredicted RBP28.84■■■□□ 2.21
PDLIM1-202ENST00000477757 ATP10DQ9P241 1426 aa28.84■■■□□ 2.21
PDLIM1-202ENST00000477757 MEGF6O75095 1541 aa28.84■■■□□ 2.21
PDLIM1-202ENST00000477757 LTV1Q96GA3 475 aaPredicted RBP28.83■■■□□ 2.21
PDLIM1-202ENST00000477757 TERF2IPQ9NYB0 399 aa28.83■■■□□ 2.21
PDLIM1-202ENST00000477757 COL23A1Q86Y22 540 aaPredicted RBP28.8■■■□□ 2.2
PDLIM1-202ENST00000477757 C5P01031 1676 aa28.8■■■□□ 2.2
PDLIM1-202ENST00000477757 ZCRB1Q8TBF4 217 aaKnown RBP28.79■■■□□ 2.2
PDLIM1-202ENST00000477757 RGPD2P0DJD1 1756 aa28.78■■■□□ 2.2
PDLIM1-202ENST00000477757 USP47Q96K76 1375 aa28.78■■■□□ 2.2
PDLIM1-202ENST00000477757 MAP3K19Q56UN5 1328 aa28.78■■■□□ 2.2
PDLIM1-202ENST00000477757 MSH5O43196 834 aa28.78■■■□□ 2.2
PDLIM1-202ENST00000477757 ADCY9O60503 1353 aa28.77■■■□□ 2.2
PDLIM1-202ENST00000477757 HOXC9P31274 260 aa28.77■■■□□ 2.2
PDLIM1-202ENST00000477757 CARD11Q9BXL7 1154 aa28.76■■■□□ 2.19
PDLIM1-202ENST00000477757 NEUROD1Q13562 356 aa28.75■■■□□ 2.19
PDLIM1-202ENST00000477757 MSL1Q68DK7 614 aa28.75■■■□□ 2.19
PDLIM1-202ENST00000477757 PUS7Q96PZ0 661 aaKnown RBP28.75■■■□□ 2.19
PDLIM1-202ENST00000477757 RTL1A6NKG5 1358 aa28.74■■■□□ 2.19
PDLIM1-202ENST00000477757 CD2APQ9Y5K6 639 aa28.73■■■□□ 2.19
PDLIM1-202ENST00000477757 COG3Q96JB2 828 aa28.71■■■□□ 2.19
PDLIM1-202ENST00000477757 GPBP1L1Q9HC44 474 aaPredicted RBP28.71■■■□□ 2.19
PDLIM1-202ENST00000477757 CGNL1Q0VF96 1302 aa28.7■■■□□ 2.19
PDLIM1-202ENST00000477757 AMPHP49418 695 aa28.7■■■□□ 2.18
PDLIM1-202ENST00000477757 TAF1LQ8IZX4 1826 aa28.69■■■□□ 2.18
PDLIM1-202ENST00000477757 FLAD1Q8NFF5 587 aa28.67■■■□□ 2.18
PDLIM1-202ENST00000477757 HSPA6P17066 643 aa28.66■■■□□ 2.18
PDLIM1-202ENST00000477757 TOGARAM1Q9Y4F4 1720 aa28.66■■■□□ 2.18
PDLIM1-202ENST00000477757 PALLDQ8WX93 1383 aa28.65■■■□□ 2.18
PDLIM1-202ENST00000477757 FBLN1P23142 703 aa28.65■■■□□ 2.18
PDLIM1-202ENST00000477757 HMGB2P26583 209 aaKnown RBP28.65■■■□□ 2.18
PDLIM1-202ENST00000477757 NBPF6Q5VWK0 638 aa28.65■■■□□ 2.18
PDLIM1-202ENST00000477757 NBPF4Q96M43 638 aa28.65■■■□□ 2.18
PDLIM1-202ENST00000477757 C4BP0C0L5 1744 aa28.65■■■□□ 2.18
PDLIM1-202ENST00000477757 SMG6Q86US8 1419 aaKnown RBP28.64■■■□□ 2.18
PDLIM1-202ENST00000477757 RAPGEF4Q8WZA2 1011 aa28.63■■■□□ 2.17
PDLIM1-202ENST00000477757 PCDH11XQ9BZA7 1347 aa28.62■■■□□ 2.17
PDLIM1-202ENST00000477757 PCDH11YQ9BZA8 1340 aa28.62■■■□□ 2.17
PDLIM1-202ENST00000477757 USHBP1Q8N6Y0 703 aa28.61■■■□□ 2.17
PDLIM1-202ENST00000477757 ZNF526Q8TF50 670 aaPredicted RBP28.6■■■□□ 2.17
PDLIM1-202ENST00000477757 UBR3Q6ZT12 1888 aa28.59■■■□□ 2.17
PDLIM1-202ENST00000477757 NSD3Q9BZ95 1437 aa28.59■■■□□ 2.17
PDLIM1-202ENST00000477757 TATP17735 454 aaPredicted RBP28.58■■■□□ 2.17
PDLIM1-202ENST00000477757 RRS1Q15050 365 aaKnown RBP28.58■■■□□ 2.17
PDLIM1-202ENST00000477757 TESK2Q96S53 571 aa28.58■■■□□ 2.17
PDLIM1-202ENST00000477757 IGSF1Q8N6C5 1336 aa28.58■■■□□ 2.17
PDLIM1-202ENST00000477757 CICQ96RK0 1608 aaPredicted RBP28.58■■■□□ 2.17
PDLIM1-202ENST00000477757 AMIGO3Q86WK7 504 aa28.56■■■□□ 2.16
PDLIM1-202ENST00000477757 AK7Q96M32 723 aa28.56■■■□□ 2.16
PDLIM1-202ENST00000477757 ITGB4P16144 1822 aa28.55■■■□□ 2.16
PDLIM1-202ENST00000477757 PKD1L3Q7Z443 1732 aa28.55■■■□□ 2.16
PDLIM1-202ENST00000477757 INSRP06213 1382 aa28.54■■■□□ 2.16
PDLIM1-202ENST00000477757 MPRIPQ6WCQ1 1025 aa28.54■■■□□ 2.16
PDLIM1-202ENST00000477757 SMARCC1Q92922 1105 aaPredicted RBP28.53■■■□□ 2.16
PDLIM1-202ENST00000477757 CYP27B1O15528 508 aa28.51■■■□□ 2.15
PDLIM1-202ENST00000477757 FLT4P35916 1363 aa28.5■■■□□ 2.15
PDLIM1-202ENST00000477757 KIF24Q5T7B8 1368 aa28.5■■■□□ 2.15
PDLIM1-202ENST00000477757 MAP2P11137 1827 aaKnown RBP28.5■■■□□ 2.15
PDLIM1-202ENST00000477757 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.5■■■□□ 2.15
PDLIM1-202ENST00000477757 KIF3CO14782 793 aa28.5■■■□□ 2.15
PDLIM1-202ENST00000477757 FYB1O15117 783 aa28.49■■■□□ 2.15
PDLIM1-202ENST00000477757 PHF14O94880 888 aa28.49■■■□□ 2.15
PDLIM1-202ENST00000477757 GGNBP2Q9H3C7 697 aa28.49■■■□□ 2.15
PDLIM1-202ENST00000477757 SSFA2P28290 1259 aa28.48■■■□□ 2.15
PDLIM1-202ENST00000477757 HSP90AB2PQ58FF8 381 aa28.48■■■□□ 2.15
PDLIM1-202ENST00000477757 WWC3Q9ULE0 1092 aa28.48■■■□□ 2.15
PDLIM1-202ENST00000477757 KIF20BQ96Q89 1820 aa28.48■■■□□ 2.15
PDLIM1-202ENST00000477757 NCAPD2Q15021 1401 aa28.47■■■□□ 2.15
PDLIM1-202ENST00000477757 ST20-MTHFSA0A0A6YYL1 179 aa28.47■■■□□ 2.15
PDLIM1-202ENST00000477757 SLC24A1O60721 1099 aa28.47■■■□□ 2.15
PDLIM1-202ENST00000477757 TONSLQ96HA7 1378 aa28.47■■■□□ 2.15
PDLIM1-202ENST00000477757 SMIM5Q71RC9 77 aa28.45■■■□□ 2.14
PDLIM1-202ENST00000477757 PIGBQ92521 554 aa28.44■■■□□ 2.14
PDLIM1-202ENST00000477757 KIAA1551Q9HCM1 1747 aa28.43■■■□□ 2.14
PDLIM1-202ENST00000477757 KIF13BQ9NQT8 1826 aa28.43■■■□□ 2.14
PDLIM1-202ENST00000477757 PXDNLA1KZ92 1463 aa28.42■■■□□ 2.14
PDLIM1-202ENST00000477757 LINC00116Q8NCU8 138 aa28.42■■■□□ 2.14
PDLIM1-202ENST00000477757 LOC102724428A0A0B4J2F2 783 aa28.41■■■□□ 2.14
PDLIM1-202ENST00000477757 APLP1P51693 650 aa28.41■■■□□ 2.14
PDLIM1-202ENST00000477757 SIK1P57059 783 aa28.41■■■□□ 2.14
PDLIM1-202ENST00000477757 NKX1-1Q15270 411 aaPredicted RBP28.41■■■□□ 2.14
PDLIM1-202ENST00000477757 ANKRD26Q9UPS8 1709 aa28.38■■■□□ 2.13
PDLIM1-202ENST00000477757 GNPATO15228 680 aa28.37■■■□□ 2.13
PDLIM1-202ENST00000477757 C10orf71Q711Q0 1435 aa28.35■■■□□ 2.13
PDLIM1-202ENST00000477757 MMP10P09238 476 aa28.35■■■□□ 2.13
PDLIM1-202ENST00000477757 ITPK1Q13572 414 aa28.35■■■□□ 2.13
PDLIM1-202ENST00000477757 SPG7Q9UQ90 795 aa28.35■■■□□ 2.13
PDLIM1-202ENST00000477757 TMOD3Q9NYL9 352 aa28.34■■■□□ 2.13
PDLIM1-202ENST00000477757 N4BP2Q86UW6 1770 aaPredicted RBP28.33■■■□□ 2.13
PDLIM1-202ENST00000477757 TOMM70O94826 608 aa28.33■■■□□ 2.13
PDLIM1-202ENST00000477757 EMILIN1Q9Y6C2 1016 aa28.33■■■□□ 2.13
PDLIM1-202ENST00000477757 DNAJC5GQ8N7S2 189 aa28.32■■■□□ 2.12
PDLIM1-202ENST00000477757 ASAP1Q9ULH1 1129 aa28.32■■■□□ 2.12
PDLIM1-202ENST00000477757 TMF1P82094 1093 aa28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms