RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 COL23A1Q86Y22 540 aaPredicted RBP11.95□□□□□ -0.5
USP54-211ENST00000474929 PKD1L3Q7Z443 1732 aa11.94□□□□□ -0.5
USP54-211ENST00000474929 CCNL1Q9UK58 526 aaPredicted RBP11.94□□□□□ -0.5
USP54-211ENST00000474929 ANKRD36BQ8N2N9 1353 aa11.93□□□□□ -0.5
USP54-211ENST00000474929 ARHGEF25Q86VW2 580 aa11.93□□□□□ -0.5
USP54-211ENST00000474929 CDK19Q9BWU1 502 aa11.93□□□□□ -0.5
USP54-211ENST00000474929 AXIN2Q9Y2T1 843 aa11.93□□□□□ -0.5
USP54-211ENST00000474929 RGPD5Q99666 1765 aa11.92□□□□□ -0.5
USP54-211ENST00000474929 C5P01031 1676 aa11.92□□□□□ -0.5
USP54-211ENST00000474929 USP54Q70EL1 1684 aa11.92□□□□□ -0.5
USP54-211ENST00000474929 AIDAQ96BJ3 306 aa11.92□□□□□ -0.5
USP54-211ENST00000474929 ZC3H4Q9UPT8 1303 aaKnown RBP11.91□□□□□ -0.5
USP54-211ENST00000474929 STAC3Q96MF2 364 aa11.91□□□□□ -0.5
USP54-211ENST00000474929 DOT1LQ8TEK3 1739 aa11.91□□□□□ -0.5
USP54-211ENST00000474929 USP47Q96K76 1375 aa11.91□□□□□ -0.5
USP54-211ENST00000474929 CTCFP49711 727 aaPredicted RBP11.9□□□□□ -0.5
USP54-211ENST00000474929 KCPQ6ZWJ8 1503 aa11.9□□□□□ -0.5
USP54-211ENST00000474929 ERBB3P21860 1342 aa11.89□□□□□ -0.51
USP54-211ENST00000474929 KIF13BQ9NQT8 1826 aa11.88□□□□□ -0.51
USP54-211ENST00000474929 RGS19P49795 217 aa11.88□□□□□ -0.51
USP54-211ENST00000474929 TGFB2P61812 414 aa11.88□□□□□ -0.51
USP54-211ENST00000474929 SYTL4Q96C24 671 aaPredicted RBP11.88□□□□□ -0.51
USP54-211ENST00000474929 ABHD8Q96I13 439 aa11.88□□□□□ -0.51
USP54-211ENST00000474929 FAM208AQ9UK61 1670 aaKnown RBP11.87□□□□□ -0.51
USP54-211ENST00000474929 NFAT5O94916 1531 aa11.87□□□□□ -0.51
USP54-211ENST00000474929 ARHGAP27Q6ZUM4 889 aa11.87□□□□□ -0.51
USP54-211ENST00000474929 NLRP2Q9NX02 1062 aa11.87□□□□□ -0.51
USP54-211ENST00000474929 BCS1LQ9Y276 419 aa11.87□□□□□ -0.51
USP54-211ENST00000474929 C9orf131Q5VYM1 1079 aa11.86□□□□□ -0.51
USP54-211ENST00000474929 ARFGEF1Q9Y6D6 1849 aa11.86□□□□□ -0.51
USP54-211ENST00000474929 NSD2O96028 1365 aa11.85□□□□□ -0.51
USP54-211ENST00000474929 FOXN1O15353 648 aa11.85□□□□□ -0.51
USP54-211ENST00000474929 AK7Q96M32 723 aa11.85□□□□□ -0.51
USP54-211ENST00000474929 CREBZFQ9NS37 354 aa11.85□□□□□ -0.51
USP54-211ENST00000474929 TTC21AQ8NDW8 1320 aa11.85□□□□□ -0.51
USP54-211ENST00000474929 LOC105371045A0A1W2PR82 267 aa11.84□□□□□ -0.51
USP54-211ENST00000474929 KCNQ4P56696 695 aa11.84□□□□□ -0.51
USP54-211ENST00000474929 SRPK2P78362 688 aaKnown RBP11.84□□□□□ -0.51
USP54-211ENST00000474929 RRAGCQ9HB90 399 aa11.84□□□□□ -0.51
USP54-211ENST00000474929 TAF1LQ8IZX4 1826 aa11.83□□□□□ -0.51
USP54-211ENST00000474929 C4BP0C0L5 1744 aa11.83□□□□□ -0.52
USP54-211ENST00000474929 KIAA1551Q9HCM1 1747 aa11.83□□□□□ -0.52
USP54-211ENST00000474929 VEGFAP15692 232 aaPredicted RBP11.83□□□□□ -0.52
USP54-211ENST00000474929 SSFA2P28290 1259 aa11.83□□□□□ -0.52
USP54-211ENST00000474929 PRIM1P49642 420 aaKnown RBP11.83□□□□□ -0.52
USP54-211ENST00000474929 FCHSD2O94868 740 aa11.82□□□□□ -0.52
USP54-211ENST00000474929 DDX54Q8TDD1 881 aaKnown RBP11.82□□□□□ -0.52
USP54-211ENST00000474929 MPHOSPH9Q99550 1183 aa11.82□□□□□ -0.52
USP54-211ENST00000474929 RNF181Q9P0P0 153 aa11.82□□□□□ -0.52
USP54-211ENST00000474929 PDE4DIPQ5VU43 2346 aa11.81□□□□□ -0.52
USP54-211ENST00000474929 BRCA1P38398 1863 aaKnown RBP11.81□□□□□ -0.52
USP54-211ENST00000474929 UBR3Q6ZT12 1888 aa11.81□□□□□ -0.52
USP54-211ENST00000474929 CNTNAP1P78357 1384 aa11.8□□□□□ -0.52
USP54-211ENST00000474929 N4BP2Q86UW6 1770 aaPredicted RBP11.8□□□□□ -0.52
USP54-211ENST00000474929 ZNF692Q9BU19 519 aaPredicted RBP11.8□□□□□ -0.52
USP54-211ENST00000474929 TOGARAM1Q9Y4F4 1720 aa11.8□□□□□ -0.52
USP54-211ENST00000474929 SOX12O15370 315 aa11.79□□□□□ -0.52
USP54-211ENST00000474929 CCDC87Q9NVE4 849 aa11.79□□□□□ -0.52
USP54-211ENST00000474929 PALLDQ8WX93 1383 aa11.79□□□□□ -0.52
USP54-211ENST00000474929 LTN1O94822 1766 aa11.78□□□□□ -0.52
USP54-211ENST00000474929 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.78□□□□□ -0.52
USP54-211ENST00000474929 CCDC85CA6NKD9 419 aa11.78□□□□□ -0.52
USP54-211ENST00000474929 ANKRD24Q8TF21 1146 aa11.78□□□□□ -0.52
USP54-211ENST00000474929 MKRN1Q9UHC7 482 aaKnown RBP11.78□□□□□ -0.52
USP54-211ENST00000474929 LBX1P52954 281 aa11.77□□□□□ -0.53
USP54-211ENST00000474929 SMARCC1Q92922 1105 aaPredicted RBP11.77□□□□□ -0.53
USP54-211ENST00000474929 TTC21BQ7Z4L5 1316 aa11.77□□□□□ -0.53
USP54-211ENST00000474929 GLTPD2A6NH11 291 aa11.76□□□□□ -0.53
USP54-211ENST00000474929 PHF14O94880 888 aa11.76□□□□□ -0.53
USP54-211ENST00000474929 MMP10P09238 476 aa11.76□□□□□ -0.53
USP54-211ENST00000474929 DCAF5Q96JK2 942 aa11.76□□□□□ -0.53
USP54-211ENST00000474929 MAP2K1Q02750 393 aaPredicted RBP11.75□□□□□ -0.53
USP54-211ENST00000474929 WBP1LQ9NX94 342 aa11.75□□□□□ -0.53
USP54-211ENST00000474929 CABP1Q9NZU7 370 aa11.75□□□□□ -0.53
USP54-211ENST00000474929 PIM2Q9P1W9 311 aa11.75□□□□□ -0.53
USP54-211ENST00000474929 CGNL1Q0VF96 1302 aa11.75□□□□□ -0.53
USP54-211ENST00000474929 A0A0G2JLW4 131 aa11.74□□□□□ -0.53
USP54-211ENST00000474929 DALRD3Q5D0E6 543 aaKnown RBP11.74□□□□□ -0.53
USP54-211ENST00000474929 NLGN1Q8N2Q7 840 aa11.74□□□□□ -0.53
USP54-211ENST00000474929 CABP2Q9NPB3 220 aa11.74□□□□□ -0.53
USP54-211ENST00000474929 CENPJQ9HC77 1338 aaPredicted RBP11.74□□□□□ -0.53
USP54-211ENST00000474929 KDM6AO15550 1401 aaPredicted RBP11.74□□□□□ -0.53
USP54-211ENST00000474929 C4AP0C0L4 1744 aa11.74□□□□□ -0.53
USP54-211ENST00000474929 SBF1O95248 1867 aa11.73□□□□□ -0.53
USP54-211ENST00000474929 HSPA8P11142 646 aaKnown RBP11.73□□□□□ -0.53
USP54-211ENST00000474929 USP31Q70CQ4 1352 aa11.73□□□□□ -0.53
USP54-211ENST00000474929 ZCRB1Q8TBF4 217 aaKnown RBP11.73□□□□□ -0.53
USP54-211ENST00000474929 DCAF11Q8TEB1 546 aa11.73□□□□□ -0.53
USP54-211ENST00000474929 VIRMAQ69YN4 1812 aaKnown RBP11.72□□□□□ -0.53
USP54-211ENST00000474929 TIAM2Q8IVF5 1701 aa11.72□□□□□ -0.53
USP54-211ENST00000474929 DPEP1P16444 411 aa11.72□□□□□ -0.53
USP54-211ENST00000474929 PRPF38BQ5VTL8 546 aaKnown RBP11.72□□□□□ -0.53
USP54-211ENST00000474929 CHADLQ6NUI6 762 aa11.71□□□□□ -0.53
USP54-211ENST00000474929 KDM2AQ9Y2K7 1162 aa11.71□□□□□ -0.53
USP54-211ENST00000474929 MON2Q7Z3U7 1717 aa11.7□□□□□ -0.54
USP54-211ENST00000474929 LMNB1P20700 586 aa11.7□□□□□ -0.54
USP54-211ENST00000474929 DPY19L2Q6NUT2 758 aa11.7□□□□□ -0.54
USP54-211ENST00000474929 CFAP44Q96MT7 982 aa11.7□□□□□ -0.54
USP54-211ENST00000474929 BEGAINQ9BUH8 593 aa11.7□□□□□ -0.54
USP54-211ENST00000474929 PARP3Q9Y6F1 533 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms