RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 MBD3O95983 291 aa6.64□□□□□ -1.35
SYNE1-220ENST00000471834 USP26Q9BXU7 913 aa6.64□□□□□ -1.35
SYNE1-220ENST00000471834 QRICH2Q9H0J4 1663 aa6.64□□□□□ -1.35
SYNE1-220ENST00000471834 BABAM1Q9NWV8 329 aa6.64□□□□□ -1.35
SYNE1-220ENST00000471834 KCNJ6P48051 423 aa6.64□□□□□ -1.35
SYNE1-220ENST00000471834 FYB1O15117 783 aa6.63□□□□□ -1.35
SYNE1-220ENST00000471834 MRPL50Q8N5N7 158 aaKnown RBP6.63□□□□□ -1.35
SYNE1-220ENST00000471834 ALDH8A1Q9H2A2 487 aaPredicted RBP6.63□□□□□ -1.35
SYNE1-220ENST00000471834 MTX1Q13505 466 aa6.63□□□□□ -1.35
SYNE1-220ENST00000471834 PIBF1Q8WXW3 757 aa6.63□□□□□ -1.35
SYNE1-220ENST00000471834 GBP4Q96PP9 640 aa6.63□□□□□ -1.35
SYNE1-220ENST00000471834 CRB1P82279 1406 aa6.63□□□□□ -1.35
SYNE1-220ENST00000471834 CEP170BQ9Y4F5 1589 aaPredicted RBP6.63□□□□□ -1.35
SYNE1-220ENST00000471834 NALCNQ8IZF0 1738 aa6.63□□□□□ -1.35
SYNE1-220ENST00000471834 GSPT1P15170 499 aaKnown RBP6.63□□□□□ -1.35
SYNE1-220ENST00000471834 MYRIPQ8NFW9 859 aa6.63□□□□□ -1.35
SYNE1-220ENST00000471834 CHD1LQ86WJ1 897 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 EDC4Q6P2E9 1401 aaKnown RBP6.62□□□□□ -1.35
SYNE1-220ENST00000471834 SIGLEC1Q9BZZ2 1709 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 CHL1O00533 1208 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 MCM2P49736 904 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 CSPP1Q1MSJ5 1256 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 PLEKHM2Q8IWE5 1019 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 GAS2L2Q8NHY3 880 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 KIAA1524Q8TCG1 905 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 IFT57Q9NWB7 429 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 SBNO1A3KN83 1393 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 MST1RQ04912 1400 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 A2ML1A8K2U0 1454 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 ZNF710Q8N1W2 664 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 SLFNL1Q499Z3 407 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 NRXN3Q9Y4C0 1643 aa6.62□□□□□ -1.35
SYNE1-220ENST00000471834 C3P01024 1663 aa6.61□□□□□ -1.35
SYNE1-220ENST00000471834 NCLP19338 710 aaKnown RBP6.61□□□□□ -1.35
SYNE1-220ENST00000471834 MSL3Q8N5Y2 521 aaKnown RBP6.61□□□□□ -1.35
SYNE1-220ENST00000471834 HSP90AA2PQ14568 343 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-220ENST00000471834 LRSAM1Q6UWE0 723 aa6.61□□□□□ -1.35
SYNE1-220ENST00000471834 IPO8O15397 1037 aaKnown RBP6.61□□□□□ -1.35
SYNE1-220ENST00000471834 MLECQ14165 292 aa6.61□□□□□ -1.35
SYNE1-220ENST00000471834 CC2D1BQ5T0F9 858 aaKnown RBP6.61□□□□□ -1.35
SYNE1-220ENST00000471834 ABCC6O95255 1503 aa6.61□□□□□ -1.35
SYNE1-220ENST00000471834 MTHFSP49914 203 aa6.61□□□□□ -1.35
SYNE1-220ENST00000471834 ADAMTS7Q9UKP4 1686 aa6.61□□□□□ -1.35
SYNE1-220ENST00000471834 HEG1Q9ULI3 1381 aa6.61□□□□□ -1.35
SYNE1-220ENST00000471834 MRC1P22897 1456 aa6.61□□□□□ -1.35
SYNE1-220ENST00000471834 NWD1Q149M9 1564 aa6.6□□□□□ -1.35
SYNE1-220ENST00000471834 ELP1O95163 1332 aa6.6□□□□□ -1.35
SYNE1-220ENST00000471834 DMTNQ08495 405 aa6.6□□□□□ -1.35
SYNE1-220ENST00000471834 TBC1D9Q6ZT07 1266 aa6.6□□□□□ -1.35
SYNE1-220ENST00000471834 PREX1Q8TCU6 1659 aa6.6□□□□□ -1.35
SYNE1-220ENST00000471834 CDC45O75419 566 aa6.6□□□□□ -1.35
SYNE1-220ENST00000471834 KIAA1211Q6ZU35 1233 aa6.6□□□□□ -1.35
SYNE1-220ENST00000471834 PHRF1Q9P1Y6 1649 aaKnown RBP6.6□□□□□ -1.35
SYNE1-220ENST00000471834 RGS3P49796 1198 aa6.6□□□□□ -1.35
SYNE1-220ENST00000471834 TTC22Q5TAA0 569 aa6.6□□□□□ -1.35
SYNE1-220ENST00000471834 TM6SF1Q9BZW5 370 aa6.6□□□□□ -1.35
SYNE1-220ENST00000471834 TMEM63CQ9P1W3 806 aa6.59□□□□□ -1.35
SYNE1-220ENST00000471834 COL15A1P39059 1388 aa6.59□□□□□ -1.35
SYNE1-220ENST00000471834 IL13P35225 146 aa6.59□□□□□ -1.35
SYNE1-220ENST00000471834 HDGFP51858 240 aaKnown RBP6.59□□□□□ -1.35
SYNE1-220ENST00000471834 EXOSC9Q06265 439 aaKnown RBP6.59□□□□□ -1.35
SYNE1-220ENST00000471834 GTPBP4Q9BZE4 634 aaKnown RBP6.59□□□□□ -1.35
SYNE1-220ENST00000471834 API5Q9BZZ5 524 aaKnown RBP6.59□□□□□ -1.35
SYNE1-220ENST00000471834 SASS6Q6UVJ0 657 aa6.59□□□□□ -1.35
SYNE1-220ENST00000471834 TTC14Q96N46 770 aa6.59□□□□□ -1.35
SYNE1-220ENST00000471834 FEZ1Q99689 392 aa6.59□□□□□ -1.35
SYNE1-220ENST00000471834 RBSNQ9H1K0 784 aa6.59□□□□□ -1.35
SYNE1-220ENST00000471834 TOPAZ1Q8N9V7 1692 aa6.59□□□□□ -1.36
SYNE1-220ENST00000471834 RGL3Q3MIN7 710 aa6.59□□□□□ -1.36
SYNE1-220ENST00000471834 AFAP1Q8N556 730 aa6.59□□□□□ -1.36
SYNE1-220ENST00000471834 TMEM57Q8N5G2 664 aa6.59□□□□□ -1.36
SYNE1-220ENST00000471834 CCDC94Q9BW85 323 aaPredicted RBP6.59□□□□□ -1.36
SYNE1-220ENST00000471834 EVC2Q86UK5 1308 aa6.59□□□□□ -1.36
SYNE1-220ENST00000471834 GIGYF1O75420 1035 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-220ENST00000471834 SLC12A5Q9H2X9 1139 aa6.58□□□□□ -1.36
SYNE1-220ENST00000471834 ERBB3P21860 1342 aa6.58□□□□□ -1.36
SYNE1-220ENST00000471834 MSH6P52701 1360 aa6.58□□□□□ -1.36
SYNE1-220ENST00000471834 GPT2Q8TD30 523 aa6.58□□□□□ -1.36
SYNE1-220ENST00000471834 CFAP53Q96M91 514 aa6.58□□□□□ -1.36
SYNE1-220ENST00000471834 RIMBP3CA6NJZ7 1639 aa6.58□□□□□ -1.36
SYNE1-220ENST00000471834 RIMBP3BA6NNM3 1639 aa6.58□□□□□ -1.36
SYNE1-220ENST00000471834 RIMBP3Q9UFD9 1639 aa6.58□□□□□ -1.36
SYNE1-220ENST00000471834 TSGA10IPQ3SY00 556 aa6.58□□□□□ -1.36
SYNE1-220ENST00000471834 POLKQ9UBT6 870 aa6.58□□□□□ -1.36
SYNE1-220ENST00000471834 ALKQ9UM73 1620 aa6.58□□□□□ -1.36
SYNE1-220ENST00000471834 OVOS2A0A0G2JMS6 1433 aa6.57□□□□□ -1.36
SYNE1-220ENST00000471834 NFE2L2Q16236 605 aa6.57□□□□□ -1.36
SYNE1-220ENST00000471834 ADCY9O60503 1353 aa6.57□□□□□ -1.36
SYNE1-220ENST00000471834 KIF1BO60333 1816 aa6.57□□□□□ -1.36
SYNE1-220ENST00000471834 PLEKHG3A1L390 1219 aa6.57□□□□□ -1.36
SYNE1-220ENST00000471834 L2HGDHQ9H9P8 463 aa6.57□□□□□ -1.36
SYNE1-220ENST00000471834 TULP2O00295 520 aa6.57□□□□□ -1.36
SYNE1-220ENST00000471834 CAVIN2O95810 425 aa6.57□□□□□ -1.36
SYNE1-220ENST00000471834 TNNT2P45379 298 aaPredicted RBP6.57□□□□□ -1.36
SYNE1-220ENST00000471834 GABPB1Q06547 395 aaPredicted RBP6.57□□□□□ -1.36
SYNE1-220ENST00000471834 RFX7Q2KHR2 1363 aa6.57□□□□□ -1.36
SYNE1-220ENST00000471834 MON2Q7Z3U7 1717 aa6.57□□□□□ -1.36
SYNE1-220ENST00000471834 PPP1R1BQ9UD71 204 aaPredicted RBP6.57□□□□□ -1.36
SYNE1-220ENST00000471834 ARHGAP23Q9P227 1491 aa6.57□□□□□ -1.36
SYNE1-220ENST00000471834 SPRYD3Q8NCJ5 442 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms