RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 ABCA3Q99758 1704 aa23.36■■□□□ 1.33
SMC4-211ENST00000469858 CRB1P82279 1406 aa23.36■■□□□ 1.33
SMC4-211ENST00000469858 GNAT3A8MTJ3 354 aa23.36■■□□□ 1.33
SMC4-211ENST00000469858 SSH1Q8WYL5 1049 aa23.36■■□□□ 1.33
SMC4-211ENST00000469858 ABCC6O95255 1503 aa23.35■■□□□ 1.33
SMC4-211ENST00000469858 CPDO75976 1380 aa23.35■■□□□ 1.33
SMC4-211ENST00000469858 MAP3K5Q99683 1374 aa23.35■■□□□ 1.33
SMC4-211ENST00000469858 PDE3AQ14432 1141 aa23.35■■□□□ 1.33
SMC4-211ENST00000469858 ROBO1Q9Y6N7 1651 aa23.35■■□□□ 1.33
SMC4-211ENST00000469858 LRRC37A3O60309 1634 aa23.35■■□□□ 1.33
SMC4-211ENST00000469858 HTATSF1O43719 755 aaKnown RBP23.34■■□□□ 1.33
SMC4-211ENST00000469858 LMO7Q8WWI1 1683 aa23.34■■□□□ 1.33
SMC4-211ENST00000469858 TSPYL6Q8N831 410 aa23.33■■□□□ 1.33
SMC4-211ENST00000469858 CHL1O00533 1208 aa23.32■■□□□ 1.32
SMC4-211ENST00000469858 HAP1P54257 671 aaPredicted RBP23.32■■□□□ 1.32
SMC4-211ENST00000469858 PANK1Q8TE04 598 aa23.32■■□□□ 1.32
SMC4-211ENST00000469858 FAM208AQ9UK61 1670 aaKnown RBP23.32■■□□□ 1.32
SMC4-211ENST00000469858 ELL2O00472 640 aaPredicted RBP23.32■■□□□ 1.32
SMC4-211ENST00000469858 VAMP4O75379 141 aa23.31■■□□□ 1.32
SMC4-211ENST00000469858 TWISTNBQ3B726 338 aaPredicted RBP23.31■■□□□ 1.32
SMC4-211ENST00000469858 ALDH1L2Q3SY69 923 aa23.31■■□□□ 1.32
SMC4-211ENST00000469858 C8orf58Q8NAV2 365 aa23.31■■□□□ 1.32
SMC4-211ENST00000469858 ZNF428Q96B54 188 aa23.31■■□□□ 1.32
SMC4-211ENST00000469858 TNNQ9UQP3 1299 aa23.31■■□□□ 1.32
SMC4-211ENST00000469858 CSB-PGBD3P0DP91 1061 aa23.3■■□□□ 1.32
SMC4-211ENST00000469858 NLRP2Q9NX02 1062 aa23.3■■□□□ 1.32
SMC4-211ENST00000469858 ZKSCAN2Q63HK3 967 aa23.29■■□□□ 1.32
SMC4-211ENST00000469858 PLEKHO1Q53GL0 409 aaPredicted RBP23.29■■□□□ 1.32
SMC4-211ENST00000469858 PRDM11Q9NQV5 511 aa23.29■■□□□ 1.32
SMC4-211ENST00000469858 COG6Q9Y2V7 657 aa23.29■■□□□ 1.32
SMC4-211ENST00000469858 IL17REQ8NFR9 667 aa23.28■■□□□ 1.32
SMC4-211ENST00000469858 CLUAP1Q96AJ1 413 aa23.28■■□□□ 1.32
SMC4-211ENST00000469858 MIS18AQ9NYP9 233 aa23.28■■□□□ 1.32
SMC4-211ENST00000469858 AMOTQ4VCS5 1084 aa23.27■■□□□ 1.32
SMC4-211ENST00000469858 ZNF530Q6P9A1 599 aaPredicted RBP23.27■■□□□ 1.32
SMC4-211ENST00000469858 TSPYL4Q9UJ04 414 aa23.27■■□□□ 1.32
SMC4-211ENST00000469858 KIF16BQ96L93 1317 aa23.27■■□□□ 1.32
SMC4-211ENST00000469858 VIRMAQ69YN4 1812 aaKnown RBP23.27■■□□□ 1.32
SMC4-211ENST00000469858 RLBP1P12271 317 aa23.27■■□□□ 1.32
SMC4-211ENST00000469858 KRT24Q2M2I5 525 aa23.26■■□□□ 1.31
SMC4-211ENST00000469858 NOB1Q9ULX3 412 aaKnown RBP23.26■■□□□ 1.31
SMC4-211ENST00000469858 AHDC1Q5TGY3 1603 aaPredicted RBP23.25■■□□□ 1.31
SMC4-211ENST00000469858 FTSJ3Q8IY81 847 aaKnown RBP23.24■■□□□ 1.31
SMC4-211ENST00000469858 TRIM27P14373 513 aa23.23■■□□□ 1.31
SMC4-211ENST00000469858 AKAP4Q5JQC9 854 aa23.23■■□□□ 1.31
SMC4-211ENST00000469858 DZIP1LQ8IYY4 767 aaKnown RBP23.23■■□□□ 1.31
SMC4-211ENST00000469858 RAPGEF4Q8WZA2 1011 aa23.23■■□□□ 1.31
SMC4-211ENST00000469858 TCERG1O14776 1098 aaKnown RBP23.23■■□□□ 1.31
SMC4-211ENST00000469858 ATF7IPQ6VMQ6 1270 aa23.23■■□□□ 1.31
SMC4-211ENST00000469858 MS4A1P11836 297 aa23.22■■□□□ 1.31
SMC4-211ENST00000469858 C1orf141Q5JVX7 400 aa23.22■■□□□ 1.31
SMC4-211ENST00000469858 CEMIPQ8WUJ3 1361 aa23.22■■□□□ 1.31
SMC4-211ENST00000469858 IPO8O15397 1037 aaKnown RBP23.21■■□□□ 1.31
SMC4-211ENST00000469858 BRPF1P55201 1214 aaPredicted RBP23.21■■□□□ 1.31
SMC4-211ENST00000469858 MRPL50Q8N5N7 158 aaKnown RBP23.21■■□□□ 1.31
SMC4-211ENST00000469858 MEGF6O75095 1541 aa23.2■■□□□ 1.31
SMC4-211ENST00000469858 TAF7Q15545 349 aaPredicted RBP23.2■■□□□ 1.3
SMC4-211ENST00000469858 LGR6Q9HBX8 967 aa23.2■■□□□ 1.3
SMC4-211ENST00000469858 TATP17735 454 aaPredicted RBP23.2■■□□□ 1.3
SMC4-211ENST00000469858 COL5A2P05997 1499 aaPredicted RBP23.19■■□□□ 1.3
SMC4-211ENST00000469858 MPRIPQ6WCQ1 1025 aa23.19■■□□□ 1.3
SMC4-211ENST00000469858 MVPQ14764 893 aaKnown RBP23.18■■□□□ 1.3
SMC4-211ENST00000469858 WDR17Q8IZU2 1322 aa23.18■■□□□ 1.3
SMC4-211ENST00000469858 PHLPP1O60346 1717 aa23.18■■□□□ 1.3
SMC4-211ENST00000469858 BABAM1Q9NWV8 329 aa23.16■■□□□ 1.3
SMC4-211ENST00000469858 COL22A1Q8NFW1 1626 aaPredicted RBP23.16■■□□□ 1.3
SMC4-211ENST00000469858 RNMTO43148 476 aaKnown RBP23.15■■□□□ 1.3
SMC4-211ENST00000469858 TEFQ10587 303 aa23.15■■□□□ 1.3
SMC4-211ENST00000469858 TOM1L2Q6ZVM7 507 aa23.15■■□□□ 1.3
SMC4-211ENST00000469858 KDM3BQ7LBC6 1761 aa23.15■■□□□ 1.3
SMC4-211ENST00000469858 PKD1L3Q7Z443 1732 aa23.15■■□□□ 1.3
SMC4-211ENST00000469858 SPG7Q9UQ90 795 aa23.14■■□□□ 1.3
SMC4-211ENST00000469858 OVOS2A0A0G2JMS6 1433 aa23.14■■□□□ 1.29
SMC4-211ENST00000469858 ITPRIPQ8IWB1 547 aa23.14■■□□□ 1.29
SMC4-211ENST00000469858 TMEM57Q8N5G2 664 aa23.13■■□□□ 1.29
SMC4-211ENST00000469858 ARHGAP45Q92619 1136 aa23.13■■□□□ 1.29
SMC4-211ENST00000469858 STRN4Q9NRL3 753 aa23.13■■□□□ 1.29
SMC4-211ENST00000469858 ADAMTS7Q9UKP4 1686 aa23.13■■□□□ 1.29
SMC4-211ENST00000469858 PARP4Q9UKK3 1724 aaKnown RBP23.13■■□□□ 1.29
SMC4-211ENST00000469858 COL16A1Q07092 1604 aaPredicted RBP23.13■■□□□ 1.29
SMC4-211ENST00000469858 KDM2BQ8NHM5 1336 aa23.13■■□□□ 1.29
SMC4-211ENST00000469858 PIP4K2BP78356 416 aa23.12■■□□□ 1.29
SMC4-211ENST00000469858 PLEKHG2Q9H7P9 1386 aa23.12■■□□□ 1.29
SMC4-211ENST00000469858 TOM1O60784 492 aa23.12■■□□□ 1.29
SMC4-211ENST00000469858 AAMPQ13685 434 aa23.12■■□□□ 1.29
SMC4-211ENST00000469858 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.12■■□□□ 1.294e-7■■■■□ 23.1
SMC4-211ENST00000469858 SCN11AQ9UI33 1791 aa23.12■■□□□ 1.29
SMC4-211ENST00000469858 SIPA1L3O60292 1781 aaPredicted RBP23.11■■□□□ 1.29
SMC4-211ENST00000469858 EVA1CP58658 441 aa23.1■■□□□ 1.29
SMC4-211ENST00000469858 CENPQQ7L2Z9 268 aaPredicted RBP23.1■■□□□ 1.29
SMC4-211ENST00000469858 DDX19BQ9UMR2 479 aa23.1■■□□□ 1.29
SMC4-211ENST00000469858 TSHZ2Q9NRE2 1034 aa23.1■■□□□ 1.29
SMC4-211ENST00000469858 COL14A1Q05707 1796 aaKnown RBP23.09■■□□□ 1.29
SMC4-211ENST00000469858 PHKG2P15735 406 aa23.09■■□□□ 1.29
SMC4-211ENST00000469858 BTBD11A6QL63 1104 aa23.09■■□□□ 1.29
SMC4-211ENST00000469858 LARP1Q6PKG0 1096 aaKnown RBP23.09■■□□□ 1.29
SMC4-211ENST00000469858 IFNL2Q8IZJ0 200 aa23.08■■□□□ 1.29
SMC4-211ENST00000469858 CARD10Q9BWT7 1032 aa23.08■■□□□ 1.29
SMC4-211ENST00000469858 API5Q9BZZ5 524 aaKnown RBP23.08■■□□□ 1.29
SMC4-211ENST00000469858 KDM6AO15550 1401 aaPredicted RBP23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 165.3 ms