RNA–Protein interactions for RNA: ENST00000469778.1

SPTLC1-204, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 2

Gene SPTLC1, Length 490 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-204ENST00000469778 FAM196AQ6ZSG2 479 aa16.83■□□□□ 0.28
SPTLC1-204ENST00000469778 USHBP1Q8N6Y0 703 aa16.83■□□□□ 0.28
SPTLC1-204ENST00000469778 NEFMP07197 916 aa16.82■□□□□ 0.28
SPTLC1-204ENST00000469778 PARP4Q9UKK3 1724 aaKnown RBP16.82■□□□□ 0.28
SPTLC1-204ENST00000469778 BCL9O00512 1426 aa16.81■□□□□ 0.28
SPTLC1-204ENST00000469778 PCDH11XQ9BZA7 1347 aa16.81■□□□□ 0.28
SPTLC1-204ENST00000469778 PCDH11YQ9BZA8 1340 aa16.81■□□□□ 0.28
SPTLC1-204ENST00000469778 WDR43Q15061 677 aaKnown RBP eCLIP16.81■□□□□ 0.28
SPTLC1-204ENST00000469778 RGPD1P0DJD0 1748 aa16.81■□□□□ 0.28
SPTLC1-204ENST00000469778 TNS2Q63HR2 1409 aa16.8■□□□□ 0.28
SPTLC1-204ENST00000469778 CCER2I3L3R5 266 aa16.8■□□□□ 0.28
SPTLC1-204ENST00000469778 CCDC125Q86Z20 511 aa16.8■□□□□ 0.28
SPTLC1-204ENST00000469778 AEBP1Q8IUX7 1158 aa16.8■□□□□ 0.28
SPTLC1-204ENST00000469778 HSP90AB1P08238 724 aaKnown RBP16.79■□□□□ 0.28
SPTLC1-204ENST00000469778 HMOX1P09601 288 aa16.79■□□□□ 0.28
SPTLC1-204ENST00000469778 RSPH6AQ9H0K4 717 aa16.79■□□□□ 0.28
SPTLC1-204ENST00000469778 MEGF6O75095 1541 aa16.79■□□□□ 0.28
SPTLC1-204ENST00000469778 IFNL2Q8IZJ0 200 aa16.78■□□□□ 0.28
SPTLC1-204ENST00000469778 MARCH10Q8NA82 808 aaPredicted RBP16.78■□□□□ 0.28
SPTLC1-204ENST00000469778 GAS2L2Q8NHY3 880 aa16.78■□□□□ 0.28
SPTLC1-204ENST00000469778 MRS2Q9HD23 443 aa16.78■□□□□ 0.28
SPTLC1-204ENST00000469778 RGPD2P0DJD1 1756 aa16.78■□□□□ 0.28
SPTLC1-204ENST00000469778 NKX1-1Q15270 411 aaPredicted RBP16.77■□□□□ 0.28
SPTLC1-204ENST00000469778 DDX54Q8TDD1 881 aaKnown RBP16.77■□□□□ 0.28
SPTLC1-204ENST00000469778 WNK3Q9BYP7 1800 aa16.76■□□□□ 0.27
SPTLC1-204ENST00000469778 PRKAR2BP31323 418 aa16.76■□□□□ 0.27
SPTLC1-204ENST00000469778 ILDR2Q71H61 639 aa16.76■□□□□ 0.27
SPTLC1-204ENST00000469778 C1orf141Q5JVX7 400 aa16.75■□□□□ 0.27
SPTLC1-204ENST00000469778 PNISRQ8TF01 805 aaKnown RBP16.75■□□□□ 0.27
SPTLC1-204ENST00000469778 PHKG2P15735 406 aa16.74■□□□□ 0.27
SPTLC1-204ENST00000469778 AKAP4Q5JQC9 854 aa16.74■□□□□ 0.27
SPTLC1-204ENST00000469778 ADAMTS8Q9UP79 889 aa16.74■□□□□ 0.27
SPTLC1-204ENST00000469778 LRRC37A3O60309 1634 aa16.74■□□□□ 0.27
SPTLC1-204ENST00000469778 CYP27B1O15528 508 aa16.73■□□□□ 0.27
SPTLC1-204ENST00000469778 HTATSF1O43719 755 aaKnown RBP16.73■□□□□ 0.27
SPTLC1-204ENST00000469778 ZNF530Q6P9A1 599 aaPredicted RBP16.73■□□□□ 0.27
SPTLC1-204ENST00000469778 DCAF5Q96JK2 942 aa16.73■□□□□ 0.27
SPTLC1-204ENST00000469778 PLEKHF1Q96S99 279 aa16.73■□□□□ 0.27
SPTLC1-204ENST00000469778 MAPK8IP3Q9UPT6 1336 aa16.72■□□□□ 0.27
SPTLC1-204ENST00000469778 MTHFSDQ2M296 383 aaKnown RBP16.72■□□□□ 0.27
SPTLC1-204ENST00000469778 RUNDC1Q96C34 613 aa16.72■□□□□ 0.27
SPTLC1-204ENST00000469778 PKD1L3Q7Z443 1732 aa16.71■□□□□ 0.27
SPTLC1-204ENST00000469778 ERVV-2B6SEH9 535 aa16.71■□□□□ 0.27
SPTLC1-204ENST00000469778 BCL11BQ9C0K0 894 aaPredicted RBP16.71■□□□□ 0.27
SPTLC1-204ENST00000469778 BRWD3Q6RI45 1802 aa16.7■□□□□ 0.26
SPTLC1-204ENST00000469778 PHACTR3Q96KR7 559 aa16.7■□□□□ 0.26
SPTLC1-204ENST00000469778 GNAT3A8MTJ3 354 aa16.69■□□□□ 0.26
SPTLC1-204ENST00000469778 HMGB2P26583 209 aaKnown RBP16.69■□□□□ 0.26
SPTLC1-204ENST00000469778 SF3B2Q13435 895 aaKnown RBP16.69■□□□□ 0.26
SPTLC1-204ENST00000469778 CCDC184Q52MB2 194 aa16.69■□□□□ 0.26
SPTLC1-204ENST00000469778 NCBP3Q53F19 620 aaKnown RBP16.69■□□□□ 0.26
SPTLC1-204ENST00000469778 LMOD3Q0VAK6 560 aa16.67■□□□□ 0.26
SPTLC1-204ENST00000469778 NFE2L2Q16236 605 aa16.67■□□□□ 0.26
SPTLC1-204ENST00000469778 FAM182BQ5T319 152 aa16.67■□□□□ 0.26
SPTLC1-204ENST00000469778 MIER1Q8N108 512 aa16.67■□□□□ 0.26
SPTLC1-204ENST00000469778 NGEFQ8N5V2 710 aa16.67■□□□□ 0.26
SPTLC1-204ENST00000469778 RTF1Q92541 710 aaKnown RBP16.67■□□□□ 0.26
SPTLC1-204ENST00000469778 SOCS7O14512 581 aa16.66■□□□□ 0.26
SPTLC1-204ENST00000469778 UPF1Q92900 1129 aaKnown RBP eCLIP16.66■□□□□ 0.26
SPTLC1-204ENST00000469778 MAP3K5Q99683 1374 aa16.65■□□□□ 0.26
SPTLC1-204ENST00000469778 TRIM37O94972 964 aa16.65■□□□□ 0.26
SPTLC1-204ENST00000469778 PRIM1P49642 420 aaKnown RBP16.65■□□□□ 0.26
SPTLC1-204ENST00000469778 PLSCR1O15162 318 aa16.64■□□□□ 0.25
SPTLC1-204ENST00000469778 TMPOP42166 694 aaKnown RBP16.64■□□□□ 0.25
SPTLC1-204ENST00000469778 SHANK3Q9BYB0 1731 aa16.63■□□□□ 0.25
SPTLC1-204ENST00000469778 RNMTO43148 476 aaKnown RBP16.63■□□□□ 0.25
SPTLC1-204ENST00000469778 CABP4P57796 275 aa16.63■□□□□ 0.25
SPTLC1-204ENST00000469778 MPRIPQ6WCQ1 1025 aa16.63■□□□□ 0.25
SPTLC1-204ENST00000469778 TMOD3Q9NYL9 352 aa16.63■□□□□ 0.25
SPTLC1-204ENST00000469778 BAG6P46379 1132 aa16.62■□□□□ 0.25
SPTLC1-204ENST00000469778 RIPK4P57078 832 aa16.62■□□□□ 0.25
SPTLC1-204ENST00000469778 SMARCC1Q92922 1105 aaPredicted RBP16.62■□□□□ 0.25
SPTLC1-204ENST00000469778 APBA3O96018 575 aa16.61■□□□□ 0.25
SPTLC1-204ENST00000469778 FAM9BQ8IZU0 186 aa16.61■□□□□ 0.25
SPTLC1-204ENST00000469778 IL17REQ8NFR9 667 aa16.61■□□□□ 0.25
SPTLC1-204ENST00000469778 SYTL4Q96C24 671 aaPredicted RBP16.61■□□□□ 0.25
SPTLC1-204ENST00000469778 CEMIPQ8WUJ3 1361 aa16.61■□□□□ 0.25
SPTLC1-204ENST00000469778 KCNQ2O43526 872 aa16.6■□□□□ 0.25
SPTLC1-204ENST00000469778 CALD1Q05682 793 aaKnown RBP16.6■□□□□ 0.25
SPTLC1-204ENST00000469778 TEFQ10587 303 aa16.6■□□□□ 0.25
SPTLC1-204ENST00000469778 CCDC146Q8IYE0 955 aa16.6■□□□□ 0.25
SPTLC1-204ENST00000469778 ACSBG1Q96GR2 724 aa16.6■□□□□ 0.25
SPTLC1-204ENST00000469778 SLC52A2Q9HAB3 445 aa16.6■□□□□ 0.25
SPTLC1-204ENST00000469778 APAF1O14727 1248 aa16.59■□□□□ 0.25
SPTLC1-204ENST00000469778 CCDC27Q2M243 656 aa16.59■□□□□ 0.25
SPTLC1-204ENST00000469778 NFATC2IPQ8NCF5 419 aa16.59■□□□□ 0.25
SPTLC1-204ENST00000469778 PIGBQ92521 554 aa16.59■□□□□ 0.25
SPTLC1-204ENST00000469778 LGR6Q9HBX8 967 aa16.59■□□□□ 0.25
SPTLC1-204ENST00000469778 BABAM1Q9NWV8 329 aa16.59■□□□□ 0.25
SPTLC1-204ENST00000469778 KDM6AO15550 1401 aaPredicted RBP16.59■□□□□ 0.25
SPTLC1-204ENST00000469778 EP400Q96L91 3159 aa16.58■□□□□ 0.24
SPTLC1-204ENST00000469778 SBF2Q86WG5 1849 aa16.57■□□□□ 0.24
SPTLC1-204ENST00000469778 NHSQ6T4R5 1651 aa16.57■□□□□ 0.24
SPTLC1-204ENST00000469778 SLC27A3Q5K4L6 730 aa16.57■□□□□ 0.24
SPTLC1-204ENST00000469778 TAF7Q15545 349 aaPredicted RBP16.56■□□□□ 0.24
SPTLC1-204ENST00000469778 ADAMTS7Q9UKP4 1686 aa16.56■□□□□ 0.24
SPTLC1-204ENST00000469778 CAMKK2Q96RR4 588 aa16.55■□□□□ 0.24
SPTLC1-204ENST00000469778 KAT6BQ8WYB5 2073 aa16.55■□□□□ 0.24
SPTLC1-204ENST00000469778 MRC1P22897 1456 aa16.54■□□□□ 0.24
SPTLC1-204ENST00000469778 NEUROD2Q15784 382 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms