RNA–Protein interactions for RNA: ENST00000463486.5

VPS52-214, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 925 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-214ENST00000463486 TATP17735 454 aaPredicted RBP23.98■■□□□ 1.43
VPS52-214ENST00000463486 PPP2R1AP30153 589 aa23.97■■□□□ 1.43
VPS52-214ENST00000463486 DDX54Q8TDD1 881 aaKnown RBP23.97■■□□□ 1.43
VPS52-214ENST00000463486 PARD3Q8TEW0 1356 aa23.97■■□□□ 1.43
VPS52-214ENST00000463486 SF3B2Q13435 895 aaKnown RBP23.96■■□□□ 1.43
VPS52-214ENST00000463486 KDRP35968 1356 aa23.95■■□□□ 1.42
VPS52-214ENST00000463486 KCNQ2O43526 872 aa23.95■■□□□ 1.42
VPS52-214ENST00000463486 AEBP1Q8IUX7 1158 aa23.95■■□□□ 1.42
VPS52-214ENST00000463486 BCL11BQ9C0K0 894 aaPredicted RBP23.95■■□□□ 1.42
VPS52-214ENST00000463486 CYP27B1O15528 508 aa23.94■■□□□ 1.42
VPS52-214ENST00000463486 EN1Q05925 392 aaPredicted RBP23.94■■□□□ 1.42
VPS52-214ENST00000463486 CAMKK2Q96RR4 588 aa23.94■■□□□ 1.42
VPS52-214ENST00000463486 PKD1L3Q7Z443 1732 aa23.93■■□□□ 1.42
VPS52-214ENST00000463486 APBA3O96018 575 aa23.93■■□□□ 1.42
VPS52-214ENST00000463486 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.93■■□□□ 1.42
VPS52-214ENST00000463486 PLEKHG2Q9H7P9 1386 aa23.92■■□□□ 1.42
VPS52-214ENST00000463486 BAG6P46379 1132 aa23.92■■□□□ 1.42
VPS52-214ENST00000463486 DIAPH1O60610 1272 aaKnown RBP23.91■■□□□ 1.42
VPS52-214ENST00000463486 SULT6B1Q6IMI4 303 aa23.9■■□□□ 1.42
VPS52-214ENST00000463486 ACSBG1Q96GR2 724 aa23.9■■□□□ 1.42
VPS52-214ENST00000463486 NHSQ6T4R5 1651 aa23.89■■□□□ 1.42
VPS52-214ENST00000463486 ZNF316A6NFI3 1004 aaPredicted RBP23.89■■□□□ 1.41
VPS52-214ENST00000463486 EZH2Q15910 746 aaKnown RBP23.89■■□□□ 1.41
VPS52-214ENST00000463486 PCDH11XQ9BZA7 1347 aa23.88■■□□□ 1.41
VPS52-214ENST00000463486 PCDH11YQ9BZA8 1340 aa23.88■■□□□ 1.41
VPS52-214ENST00000463486 NKX1-1Q15270 411 aaPredicted RBP23.88■■□□□ 1.41
VPS52-214ENST00000463486 PLSCR1O15162 318 aa23.87■■□□□ 1.41
VPS52-214ENST00000463486 SPG7Q9UQ90 795 aa23.87■■□□□ 1.41
VPS52-214ENST00000463486 PROM2Q8N271 834 aa23.86■■□□□ 1.41
VPS52-214ENST00000463486 PRIM1P49642 420 aaKnown RBP23.84■■□□□ 1.41
VPS52-214ENST00000463486 RALBP1Q15311 655 aa23.84■■□□□ 1.41
VPS52-214ENST00000463486 HMOX1P09601 288 aa23.83■■□□□ 1.41
VPS52-214ENST00000463486 PHKG2P15735 406 aa23.83■■□□□ 1.41
VPS52-214ENST00000463486 DOT1LQ8TEK3 1739 aa23.82■■□□□ 1.4
VPS52-214ENST00000463486 RGPD3A6NKT7 1758 aaPredicted RBP23.82■■□□□ 1.4
VPS52-214ENST00000463486 RGPD4Q7Z3J3 1758 aa23.82■■□□□ 1.4
VPS52-214ENST00000463486 PLEKHO1Q53GL0 409 aaPredicted RBP23.81■■□□□ 1.4
VPS52-214ENST00000463486 IFNL2Q8IZJ0 200 aa23.81■■□□□ 1.4
VPS52-214ENST00000463486 CFAP53Q96M91 514 aa23.81■■□□□ 1.4
VPS52-214ENST00000463486 TOGARAM1Q9Y4F4 1720 aa23.81■■□□□ 1.4
VPS52-214ENST00000463486 RREB1Q92766 1687 aa23.8■■□□□ 1.4
VPS52-214ENST00000463486 BTAF1O14981 1849 aa23.8■■□□□ 1.4
VPS52-214ENST00000463486 AMOTQ4VCS5 1084 aa23.8■■□□□ 1.4
VPS52-214ENST00000463486 KAT6BQ8WYB5 2073 aa23.79■■□□□ 1.4
VPS52-214ENST00000463486 U2SURPO15042 1029 aaKnown RBP23.78■■□□□ 1.4
VPS52-214ENST00000463486 PRKRIP1Q9H875 184 aaPredicted RBP23.77■■□□□ 1.4
VPS52-214ENST00000463486 ZNF530Q6P9A1 599 aaPredicted RBP23.76■■□□□ 1.39
VPS52-214ENST00000463486 NUP188Q5SRE5 1749 aa23.76■■□□□ 1.39
VPS52-214ENST00000463486 TXNRD1Q16881 649 aa23.75■■□□□ 1.39
VPS52-214ENST00000463486 SYTL4Q96C24 671 aaPredicted RBP23.75■■□□□ 1.39
VPS52-214ENST00000463486 RSPH6AQ9H0K4 717 aa23.75■■□□□ 1.39
VPS52-214ENST00000463486 KDM6AO15550 1401 aaPredicted RBP23.74■■□□□ 1.39
VPS52-214ENST00000463486 SRCAPQ6ZRS2 3230 aa23.73■■□□□ 1.39
VPS52-214ENST00000463486 MTHFSDQ2M296 383 aaKnown RBP23.73■■□□□ 1.39
VPS52-214ENST00000463486 PIGBQ92521 554 aa23.73■■□□□ 1.39
VPS52-214ENST00000463486 NUDCQ9Y266 331 aa23.73■■□□□ 1.39
VPS52-214ENST00000463486 MYBBP1AQ9BQG0 1328 aaKnown RBP23.73■■□□□ 1.39
VPS52-214ENST00000463486 ITGB4P16144 1822 aa23.73■■□□□ 1.39
VPS52-214ENST00000463486 DCAF5Q96JK2 942 aa23.72■■□□□ 1.39
VPS52-214ENST00000463486 PHACTR3Q96KR7 559 aa23.72■■□□□ 1.39
VPS52-214ENST00000463486 MPRIPQ6WCQ1 1025 aa23.71■■□□□ 1.39
VPS52-214ENST00000463486 LRRC4BQ9NT99 713 aa23.71■■□□□ 1.39
VPS52-214ENST00000463486 U2AF1L5P0DN76 240 aaPredicted RBP23.7■■□□□ 1.38
VPS52-214ENST00000463486 U2AF1Q01081 240 aaKnown RBP eCLIP23.7■■□□□ 1.38
VPS52-214ENST00000463486 ERVV-2B6SEH9 535 aa23.69■■□□□ 1.38
VPS52-214ENST00000463486 FCHSD2O94868 740 aa23.69■■□□□ 1.38
VPS52-214ENST00000463486 HSP90AB1P08238 724 aaKnown RBP23.69■■□□□ 1.38
VPS52-214ENST00000463486 PRKAR2BP31323 418 aa23.69■■□□□ 1.38
VPS52-214ENST00000463486 AKAP4Q5JQC9 854 aa23.69■■□□□ 1.38
VPS52-214ENST00000463486 ANO8Q9HCE9 1232 aaPredicted RBP23.68■■□□□ 1.38
VPS52-214ENST00000463486 C1orf141Q5JVX7 400 aa23.67■■□□□ 1.38
VPS52-214ENST00000463486 LY75O60449 1722 aa23.67■■□□□ 1.38
VPS52-214ENST00000463486 LGR6Q9HBX8 967 aa23.66■■□□□ 1.38
VPS52-214ENST00000463486 ADAMTS7Q9UKP4 1686 aa23.65■■□□□ 1.38
VPS52-214ENST00000463486 PSDA5PKW4 1024 aaPredicted RBP23.65■■□□□ 1.38
VPS52-214ENST00000463486 R3HDM1Q15032 1099 aaKnown RBP23.65■■□□□ 1.38
VPS52-214ENST00000463486 TMOD3Q9NYL9 352 aa23.65■■□□□ 1.38
VPS52-214ENST00000463486 PAPPAQ13219 1627 aa23.65■■□□□ 1.38
VPS52-214ENST00000463486 KCNQ4P56696 695 aa23.64■■□□□ 1.37
VPS52-214ENST00000463486 SLC27A3Q5K4L6 730 aa23.64■■□□□ 1.37
VPS52-214ENST00000463486 PLEKHF1Q96S99 279 aa23.64■■□□□ 1.37
VPS52-214ENST00000463486 ASAP1Q9ULH1 1129 aa23.64■■□□□ 1.37
VPS52-214ENST00000463486 ATG3Q9NT62 314 aa23.63■■□□□ 1.37
VPS52-214ENST00000463486 SCN11AQ9UI33 1791 aa23.63■■□□□ 1.37
VPS52-214ENST00000463486 RNMTO43148 476 aaKnown RBP23.62■■□□□ 1.37
VPS52-214ENST00000463486 NBPF14Q5TI25 921 aa23.62■■□□□ 1.37
VPS52-214ENST00000463486 PALLDQ8WX93 1383 aa23.62■■□□□ 1.37
VPS52-214ENST00000463486 NFATC2IPQ8NCF5 419 aa23.61■■□□□ 1.37
VPS52-214ENST00000463486 GAS2L2Q8NHY3 880 aa23.61■■□□□ 1.37
VPS52-214ENST00000463486 IL17REQ8NFR9 667 aa23.6■■□□□ 1.37
VPS52-214ENST00000463486 SMARCC1Q92922 1105 aaPredicted RBP23.6■■□□□ 1.37
VPS52-214ENST00000463486 MRC1P22897 1456 aa23.6■■□□□ 1.37
VPS52-214ENST00000463486 CABP4P57796 275 aa23.59■■□□□ 1.37
VPS52-214ENST00000463486 SLC15A2Q16348 729 aa23.59■■□□□ 1.37
VPS52-214ENST00000463486 AKT1S1Q96B36 256 aa23.59■■□□□ 1.37
VPS52-214ENST00000463486 CCNL1Q9UK58 526 aaPredicted RBP23.59■■□□□ 1.37
VPS52-214ENST00000463486 MAP3K5Q99683 1374 aa23.58■■□□□ 1.37
VPS52-214ENST00000463486 GNAT3A8MTJ3 354 aa23.58■■□□□ 1.37
VPS52-214ENST00000463486 ZNF827Q17R98 1081 aa23.58■■□□□ 1.37
VPS52-214ENST00000463486 SLC52A2Q9HAB3 445 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms