RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 DISP2A7MBM2 1401 aa8.5□□□□□ -1.05
SF3B1-206ENST00000462613 U2AF1L5P0DN76 240 aaPredicted RBP8.5□□□□□ -1.05
SF3B1-206ENST00000462613 U2AF1Q01081 240 aaKnown RBP eCLIP8.5□□□□□ -1.05
SF3B1-206ENST00000462613 SF3B2Q13435 895 aaKnown RBP8.5□□□□□ -1.05
SF3B1-206ENST00000462613 NCAPD2Q15021 1401 aa8.5□□□□□ -1.05
SF3B1-206ENST00000462613 WDR43Q15061 677 aaKnown RBP eCLIP8.5□□□□□ -1.05
SF3B1-206ENST00000462613 AMOTQ4VCS5 1084 aa8.5□□□□□ -1.05
SF3B1-206ENST00000462613 PLEKHO1Q53GL0 409 aaPredicted RBP8.5□□□□□ -1.05
SF3B1-206ENST00000462613 SULT6B1Q6IMI4 303 aa8.5□□□□□ -1.05
SF3B1-206ENST00000462613 FAM196AQ6ZSG2 479 aa8.5□□□□□ -1.05
SF3B1-206ENST00000462613 ZCRB1Q8TBF4 217 aaKnown RBP8.5□□□□□ -1.05
SF3B1-206ENST00000462613 SHANK3Q9BYB0 1731 aa8.5□□□□□ -1.05
SF3B1-206ENST00000462613 COL3A1P02461 1466 aaPredicted RBP8.5□□□□□ -1.05
SF3B1-206ENST00000462613 PCDH11XQ9BZA7 1347 aa8.5□□□□□ -1.05
SF3B1-206ENST00000462613 PCDH11YQ9BZA8 1340 aa8.5□□□□□ -1.05
SF3B1-206ENST00000462613 MEGF6O75095 1541 aa8.49□□□□□ -1.05
SF3B1-206ENST00000462613 C1orf141Q5JVX7 400 aa8.49□□□□□ -1.05
SF3B1-206ENST00000462613 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.49□□□□□ -1.053e-36■■■■□ 20.5
SF3B1-206ENST00000462613 DOT1LQ8TEK3 1739 aa8.49□□□□□ -1.05
SF3B1-206ENST00000462613 KDRP35968 1356 aa8.48□□□□□ -1.05
SF3B1-206ENST00000462613 ITGB4P16144 1822 aa8.48□□□□□ -1.05
SF3B1-206ENST00000462613 HSP90AB1P08238 724 aaKnown RBP8.48□□□□□ -1.05
SF3B1-206ENST00000462613 HMOX1P09601 288 aa8.48□□□□□ -1.05
SF3B1-206ENST00000462613 DIEXFQ68CQ4 756 aaKnown RBP8.48□□□□□ -1.05
SF3B1-206ENST00000462613 ILDR2Q71H61 639 aa8.48□□□□□ -1.05
SF3B1-206ENST00000462613 CCDC125Q86Z20 511 aa8.48□□□□□ -1.05
SF3B1-206ENST00000462613 DDX54Q8TDD1 881 aaKnown RBP8.48□□□□□ -1.05
SF3B1-206ENST00000462613 DLG5Q8TDM6 1919 aa8.48□□□□□ -1.05
SF3B1-206ENST00000462613 MAPK8IP3Q9UPT6 1336 aa8.48□□□□□ -1.05
SF3B1-206ENST00000462613 SCN11AQ9UI33 1791 aa8.48□□□□□ -1.05
SF3B1-206ENST00000462613 FCHSD2O94868 740 aa8.47□□□□□ -1.05
SF3B1-206ENST00000462613 IFNL2Q8IZJ0 200 aa8.47□□□□□ -1.05
SF3B1-206ENST00000462613 MRS2Q9HD23 443 aa8.47□□□□□ -1.05
SF3B1-206ENST00000462613 NHSQ6T4R5 1651 aa8.46□□□□□ -1.05
SF3B1-206ENST00000462613 ZNF530Q6P9A1 599 aaPredicted RBP8.46□□□□□ -1.06
SF3B1-206ENST00000462613 AEBP1Q8IUX7 1158 aa8.46□□□□□ -1.06
SF3B1-206ENST00000462613 GAS2L2Q8NHY3 880 aa8.46□□□□□ -1.06
SF3B1-206ENST00000462613 BTAF1O14981 1849 aa8.45□□□□□ -1.06
SF3B1-206ENST00000462613 PRKAR2BP31323 418 aa8.45□□□□□ -1.06
SF3B1-206ENST00000462613 BAG6P46379 1132 aa8.45□□□□□ -1.06
SF3B1-206ENST00000462613 TNS1Q9HBL0 1735 aaKnown RBP8.45□□□□□ -1.06
SF3B1-206ENST00000462613 BCL9O00512 1426 aa8.45□□□□□ -1.06
SF3B1-206ENST00000462613 RGPD3A6NKT7 1758 aaPredicted RBP8.44□□□□□ -1.06
SF3B1-206ENST00000462613 RGPD4Q7Z3J3 1758 aa8.44□□□□□ -1.06
SF3B1-206ENST00000462613 HMGB2P26583 209 aaKnown RBP8.44□□□□□ -1.06
SF3B1-206ENST00000462613 FAM182BQ5T319 152 aa8.44□□□□□ -1.06
SF3B1-206ENST00000462613 MARCH10Q8NA82 808 aaPredicted RBP8.44□□□□□ -1.06
SF3B1-206ENST00000462613 SYTL4Q96C24 671 aaPredicted RBP8.44□□□□□ -1.06
SF3B1-206ENST00000462613 RSPH6AQ9H0K4 717 aa8.44□□□□□ -1.06
SF3B1-206ENST00000462613 SOCS7O14512 581 aa8.43□□□□□ -1.06
SF3B1-206ENST00000462613 TRIM37O94972 964 aa8.43□□□□□ -1.06
SF3B1-206ENST00000462613 PHKG2P15735 406 aa8.43□□□□□ -1.06
SF3B1-206ENST00000462613 AKAP4Q5JQC9 854 aa8.43□□□□□ -1.06
SF3B1-206ENST00000462613 RTF1Q92541 710 aaKnown RBP8.43□□□□□ -1.06
SF3B1-206ENST00000462613 DCAF5Q96JK2 942 aa8.43□□□□□ -1.06
SF3B1-206ENST00000462613 CYP27B1O15528 508 aa8.42□□□□□ -1.06
SF3B1-206ENST00000462613 LMOD3Q0VAK6 560 aa8.42□□□□□ -1.06
SF3B1-206ENST00000462613 BCL11BQ9C0K0 894 aaPredicted RBP8.42□□□□□ -1.06
SF3B1-206ENST00000462613 TOGARAM1Q9Y4F4 1720 aa8.42□□□□□ -1.06
SF3B1-206ENST00000462613 MAP3K5Q99683 1374 aa8.41□□□□□ -1.06
SF3B1-206ENST00000462613 GNAT3A8MTJ3 354 aa8.41□□□□□ -1.06
SF3B1-206ENST00000462613 CCER2I3L3R5 266 aa8.41□□□□□ -1.06
SF3B1-206ENST00000462613 APBA3O96018 575 aa8.41□□□□□ -1.06
SF3B1-206ENST00000462613 NKX1-1Q15270 411 aaPredicted RBP8.41□□□□□ -1.06
SF3B1-206ENST00000462613 MTHFSDQ2M296 383 aaKnown RBP8.41□□□□□ -1.06
SF3B1-206ENST00000462613 UPF1Q92900 1129 aaKnown RBP eCLIP8.41□□□□□ -1.06
SF3B1-206ENST00000462613 RUNDC1Q96C34 613 aa8.41□□□□□ -1.06
SF3B1-206ENST00000462613 ACSBG1Q96GR2 724 aa8.41□□□□□ -1.06
SF3B1-206ENST00000462613 TMOD3Q9NYL9 352 aa8.41□□□□□ -1.06
SF3B1-206ENST00000462613 ERVV-2B6SEH9 535 aa8.4□□□□□ -1.06
SF3B1-206ENST00000462613 CABP4P57796 275 aa8.4□□□□□ -1.06
SF3B1-206ENST00000462613 TEFQ10587 303 aa8.4□□□□□ -1.06
SF3B1-206ENST00000462613 SMARCC1Q92922 1105 aaPredicted RBP8.4□□□□□ -1.06
SF3B1-206ENST00000462613 ADAMTS8Q9UP79 889 aa8.4□□□□□ -1.06
SF3B1-206ENST00000462613 LY75O60449 1722 aa8.4□□□□□ -1.07
SF3B1-206ENST00000462613 HTATSF1O43719 755 aaKnown RBP8.39□□□□□ -1.07
SF3B1-206ENST00000462613 PRIM1P49642 420 aaKnown RBP8.39□□□□□ -1.07
SF3B1-206ENST00000462613 NFE2L2Q16236 605 aa8.39□□□□□ -1.07
SF3B1-206ENST00000462613 MPRIPQ6WCQ1 1025 aa8.39□□□□□ -1.07
SF3B1-206ENST00000462613 CCDC146Q8IYE0 955 aa8.39□□□□□ -1.07
SF3B1-206ENST00000462613 FAM9BQ8IZU0 186 aa8.39□□□□□ -1.07
SF3B1-206ENST00000462613 SIPA1L3O60292 1781 aaPredicted RBP8.39□□□□□ -1.07
SF3B1-206ENST00000462613 ADAMTS7Q9UKP4 1686 aa8.39□□□□□ -1.07
SF3B1-206ENST00000462613 EP400Q96L91 3159 aa8.38□□□□□ -1.07
SF3B1-206ENST00000462613 RREB1Q92766 1687 aa8.38□□□□□ -1.07
SF3B1-206ENST00000462613 PLSCR1O15162 318 aa8.38□□□□□ -1.07
SF3B1-206ENST00000462613 RIPK4P57078 832 aa8.38□□□□□ -1.07
SF3B1-206ENST00000462613 PNISRQ8TF01 805 aaKnown RBP8.38□□□□□ -1.07
SF3B1-206ENST00000462613 PHACTR3Q96KR7 559 aa8.38□□□□□ -1.07
SF3B1-206ENST00000462613 TAF1LQ8IZX4 1826 aa8.38□□□□□ -1.07
SF3B1-206ENST00000462613 KDM6AO15550 1401 aaPredicted RBP8.37□□□□□ -1.07
SF3B1-206ENST00000462613 RNMTO43148 476 aaKnown RBP8.37□□□□□ -1.07
SF3B1-206ENST00000462613 KCNQ2O43526 872 aa8.37□□□□□ -1.07
SF3B1-206ENST00000462613 TMPOP42166 694 aaKnown RBP8.37□□□□□ -1.07
SF3B1-206ENST00000462613 CALD1Q05682 793 aaKnown RBP8.37□□□□□ -1.07
SF3B1-206ENST00000462613 NEUROD2Q15784 382 aa8.37□□□□□ -1.07
SF3B1-206ENST00000462613 TTC5Q8N0Z6 440 aa8.37□□□□□ -1.07
SF3B1-206ENST00000462613 PLEKHF1Q96S99 279 aa8.37□□□□□ -1.07
SF3B1-206ENST00000462613 SLC52A2Q9HAB3 445 aa8.37□□□□□ -1.07
SF3B1-206ENST00000462613 NUP188Q5SRE5 1749 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms