RNA–Protein interactions for RNA: ENST00000460573.5

C9orf3-209, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-209ENST00000460573 NCAPD2Q15021 1401 aa30.19■■■□□ 2.42
C9orf3-209ENST00000460573 IGSF1Q8N6C5 1336 aa30.18■■■□□ 2.42
C9orf3-209ENST00000460573 EXOC5O00471 708 aa30.16■■■□□ 2.42
C9orf3-209ENST00000460573 ANP32CO43423 234 aa30.16■■■□□ 2.42
C9orf3-209ENST00000460573 R3HDM1Q15032 1099 aaKnown RBP30.16■■■□□ 2.42
C9orf3-209ENST00000460573 USHBP1Q8N6Y0 703 aa30.16■■■□□ 2.42
C9orf3-209ENST00000460573 CAMKK2Q96RR4 588 aa30.16■■■□□ 2.42
C9orf3-209ENST00000460573 COL3A1P02461 1466 aaPredicted RBP30.16■■■□□ 2.42
C9orf3-209ENST00000460573 RAPGEF4Q8WZA2 1011 aa30.15■■■□□ 2.42
C9orf3-209ENST00000460573 NBPF14Q5TI25 921 aa30.14■■■□□ 2.42
C9orf3-209ENST00000460573 NUDCQ9Y266 331 aa30.13■■■□□ 2.41
C9orf3-209ENST00000460573 TATP17735 454 aaPredicted RBP30.12■■■□□ 2.41
C9orf3-209ENST00000460573 SBF2Q86WG5 1849 aa30.11■■■□□ 2.41
C9orf3-209ENST00000460573 PLEKHG2Q9H7P9 1386 aa30.1■■■□□ 2.41
C9orf3-209ENST00000460573 RREB1Q92766 1687 aa30.08■■■□□ 2.41
C9orf3-209ENST00000460573 MARCH10Q8NA82 808 aaPredicted RBP30.08■■■□□ 2.41
C9orf3-209ENST00000460573 MEGF6O75095 1541 aa30.07■■■□□ 2.4
C9orf3-209ENST00000460573 TNS2Q63HR2 1409 aa30.07■■■□□ 2.4
C9orf3-209ENST00000460573 KDRP35968 1356 aa30.07■■■□□ 2.4
C9orf3-209ENST00000460573 SULT6B1Q6IMI4 303 aa30.07■■■□□ 2.4
C9orf3-209ENST00000460573 LRP5O75197 1615 aa30.07■■■□□ 2.4
C9orf3-209ENST00000460573 NUP188Q5SRE5 1749 aa30.06■■■□□ 2.4
C9orf3-209ENST00000460573 U2SURPO15042 1029 aaKnown RBP30.06■■■□□ 2.4
C9orf3-209ENST00000460573 ZCRB1Q8TBF4 217 aaKnown RBP30.05■■■□□ 2.4
C9orf3-209ENST00000460573 BCL11BQ9C0K0 894 aaPredicted RBP30.05■■■□□ 2.4
C9orf3-209ENST00000460573 KAT6BQ8WYB5 2073 aa30.04■■■□□ 2.4
C9orf3-209ENST00000460573 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP30.04■■■□□ 2.4
C9orf3-209ENST00000460573 AEBP1Q8IUX7 1158 aa30.01■■■□□ 2.39
C9orf3-209ENST00000460573 SPG7Q9UQ90 795 aa30.01■■■□□ 2.39
C9orf3-209ENST00000460573 RGPD3A6NKT7 1758 aaPredicted RBP30■■■□□ 2.39
C9orf3-209ENST00000460573 RGPD4Q7Z3J3 1758 aa30■■■□□ 2.39
C9orf3-209ENST00000460573 HMOX1P09601 288 aa29.99■■■□□ 2.39
C9orf3-209ENST00000460573 PLSCR1O15162 318 aa29.98■■■□□ 2.39
C9orf3-209ENST00000460573 U2AF1L5P0DN76 240 aaPredicted RBP29.98■■■□□ 2.39
C9orf3-209ENST00000460573 U2AF1Q01081 240 aaKnown RBP eCLIP29.98■■■□□ 2.39
C9orf3-209ENST00000460573 AMOTQ4VCS5 1084 aa29.98■■■□□ 2.39
C9orf3-209ENST00000460573 PCDH11XQ9BZA7 1347 aa29.97■■■□□ 2.39
C9orf3-209ENST00000460573 PCDH11YQ9BZA8 1340 aa29.97■■■□□ 2.39
C9orf3-209ENST00000460573 BCL9O00512 1426 aa29.97■■■□□ 2.39
C9orf3-209ENST00000460573 SRCAPQ6ZRS2 3230 aa29.97■■■□□ 2.39
C9orf3-209ENST00000460573 PLEKHO1Q53GL0 409 aaPredicted RBP29.97■■■□□ 2.39
C9orf3-209ENST00000460573 FCHSD2O94868 740 aa29.96■■■□□ 2.39
C9orf3-209ENST00000460573 DDX54Q8TDD1 881 aaKnown RBP29.95■■■□□ 2.39
C9orf3-209ENST00000460573 ACSBG1Q96GR2 724 aa29.95■■■□□ 2.39
C9orf3-209ENST00000460573 PKD1L3Q7Z443 1732 aa29.95■■■□□ 2.38
C9orf3-209ENST00000460573 DIEXFQ68CQ4 756 aaKnown RBP29.92■■■□□ 2.38
C9orf3-209ENST00000460573 PTF1AQ7RTS3 328 aa29.92■■■□□ 2.38
C9orf3-209ENST00000460573 PNNQ9H307 717 aaKnown RBP29.92■■■□□ 2.38
C9orf3-209ENST00000460573 RSPH6AQ9H0K4 717 aa29.91■■■□□ 2.38
C9orf3-209ENST00000460573 SHANK3Q9BYB0 1731 aa29.91■■■□□ 2.38
C9orf3-209ENST00000460573 NHSQ6T4R5 1651 aa29.9■■■□□ 2.38
C9orf3-209ENST00000460573 CYP27B1O15528 508 aa29.89■■■□□ 2.38
C9orf3-209ENST00000460573 WDR43Q15061 677 aaKnown RBP eCLIP29.89■■■□□ 2.38
C9orf3-209ENST00000460573 IFNL2Q8IZJ0 200 aa29.89■■■□□ 2.38
C9orf3-209ENST00000460573 PRKAR2BP31323 418 aa29.88■■■□□ 2.37
C9orf3-209ENST00000460573 KCNQ2O43526 872 aa29.87■■■□□ 2.37
C9orf3-209ENST00000460573 NEFMP07197 916 aa29.86■■■□□ 2.37
C9orf3-209ENST00000460573 NKX1-1Q15270 411 aaPredicted RBP29.86■■■□□ 2.37
C9orf3-209ENST00000460573 PPP1R1BQ9UD71 204 aaPredicted RBP29.86■■■□□ 2.37
C9orf3-209ENST00000460573 PHKG2P15735 406 aa29.85■■■□□ 2.37
C9orf3-209ENST00000460573 TXNRD1Q16881 649 aa29.85■■■□□ 2.37
C9orf3-209ENST00000460573 ZNF530Q6P9A1 599 aaPredicted RBP29.85■■■□□ 2.37
C9orf3-209ENST00000460573 STK32BQ9NY57 414 aa29.85■■■□□ 2.37
C9orf3-209ENST00000460573 HSP90AB1P08238 724 aaKnown RBP29.84■■■□□ 2.37
C9orf3-209ENST00000460573 C1orf141Q5JVX7 400 aa29.84■■■□□ 2.37
C9orf3-209ENST00000460573 MRS2Q9HD23 443 aa29.84■■■□□ 2.37
C9orf3-209ENST00000460573 GAS2L2Q8NHY3 880 aa29.82■■■□□ 2.36
C9orf3-209ENST00000460573 SYTL4Q96C24 671 aaPredicted RBP29.82■■■□□ 2.36
C9orf3-209ENST00000460573 SPON1Q9HCB6 807 aa29.82■■■□□ 2.36
C9orf3-209ENST00000460573 BTAF1O14981 1849 aa29.82■■■□□ 2.36
C9orf3-209ENST00000460573 MTHFSDQ2M296 383 aaKnown RBP29.81■■■□□ 2.36
C9orf3-209ENST00000460573 CCDC184Q52MB2 194 aa29.81■■■□□ 2.36
C9orf3-209ENST00000460573 AKAP4Q5JQC9 854 aa29.81■■■□□ 2.36
C9orf3-209ENST00000460573 ANO8Q9HCE9 1232 aaPredicted RBP29.8■■■□□ 2.36
C9orf3-209ENST00000460573 PHACTR3Q96KR7 559 aa29.79■■■□□ 2.36
C9orf3-209ENST00000460573 PLEKHF1Q96S99 279 aa29.79■■■□□ 2.36
C9orf3-209ENST00000460573 DCAF5Q96JK2 942 aa29.78■■■□□ 2.36
C9orf3-209ENST00000460573 ADAMTS8Q9UP79 889 aa29.78■■■□□ 2.36
C9orf3-209ENST00000460573 PROM2Q8N271 834 aa29.77■■■□□ 2.36
C9orf3-209ENST00000460573 MAPK8IP3Q9UPT6 1336 aa29.76■■■□□ 2.36
C9orf3-209ENST00000460573 PNISRQ8TF01 805 aaKnown RBP29.76■■■□□ 2.35
C9orf3-209ENST00000460573 CCER2I3L3R5 266 aa29.75■■■□□ 2.35
C9orf3-209ENST00000460573 DOT1LQ8TEK3 1739 aa29.74■■■□□ 2.35
C9orf3-209ENST00000460573 PRIM1P49642 420 aaKnown RBP29.73■■■□□ 2.35
C9orf3-209ENST00000460573 SLC15A2Q16348 729 aa29.73■■■□□ 2.35
C9orf3-209ENST00000460573 ERVV-2B6SEH9 535 aa29.72■■■□□ 2.35
C9orf3-209ENST00000460573 RUNDC1Q96C34 613 aa29.72■■■□□ 2.35
C9orf3-209ENST00000460573 GNAT3A8MTJ3 354 aa29.71■■■□□ 2.35
C9orf3-209ENST00000460573 MAP3K5Q99683 1374 aa29.71■■■□□ 2.35
C9orf3-209ENST00000460573 MPRIPQ6WCQ1 1025 aa29.7■■■□□ 2.35
C9orf3-209ENST00000460573 ZBTB7AO95365 584 aa29.69■■■□□ 2.34
C9orf3-209ENST00000460573 CASZ1Q86V15 1759 aa29.68■■■□□ 2.34
C9orf3-209ENST00000460573 DCAF8L1A6NGE4 600 aa29.68■■■□□ 2.34
C9orf3-209ENST00000460573 HTATSF1O43719 755 aaKnown RBP29.68■■■□□ 2.34
C9orf3-209ENST00000460573 KDM6AO15550 1401 aaPredicted RBP29.68■■■□□ 2.34
C9orf3-209ENST00000460573 NFE2L2Q16236 605 aa29.67■■■□□ 2.34
C9orf3-209ENST00000460573 TOGARAM1Q9Y4F4 1720 aa29.66■■■□□ 2.34
C9orf3-209ENST00000460573 RNMTO43148 476 aaKnown RBP29.66■■■□□ 2.34
C9orf3-209ENST00000460573 CCDC146Q8IYE0 955 aa29.66■■■□□ 2.34
C9orf3-209ENST00000460573 TMOD3Q9NYL9 352 aa29.66■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms