RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 AMOTQ4VCS5 1084 aa14.36□□□□□ -0.11
UBR4-208ENST00000459947 UPF1Q92900 1129 aaKnown RBP eCLIP14.36□□□□□ -0.11
UBR4-208ENST00000459947 EYA1Q99502 592 aa14.36□□□□□ -0.11
UBR4-208ENST00000459947 PNNQ9H307 717 aaKnown RBP14.35□□□□□ -0.11
UBR4-208ENST00000459947 HSP90AB1P08238 724 aaKnown RBP14.35□□□□□ -0.11
UBR4-208ENST00000459947 IL13P35225 146 aa14.35□□□□□ -0.11
UBR4-208ENST00000459947 PLEKHO1Q53GL0 409 aaPredicted RBP14.35□□□□□ -0.11
UBR4-208ENST00000459947 MYBBP1AQ9BQG0 1328 aaKnown RBP14.35□□□□□ -0.11
UBR4-208ENST00000459947 KDRP35968 1356 aa14.35□□□□□ -0.11
UBR4-208ENST00000459947 COL3A1P02461 1466 aaPredicted RBP14.35□□□□□ -0.11
UBR4-208ENST00000459947 BAG6P46379 1132 aa14.35□□□□□ -0.11
UBR4-208ENST00000459947 MEGF6O75095 1541 aa14.34□□□□□ -0.11
UBR4-208ENST00000459947 RGPD3A6NKT7 1758 aaPredicted RBP14.33□□□□□ -0.12
UBR4-208ENST00000459947 RGPD4Q7Z3J3 1758 aa14.33□□□□□ -0.12
UBR4-208ENST00000459947 NEFMP07197 916 aa14.32□□□□□ -0.12
UBR4-208ENST00000459947 NHSQ6T4R5 1651 aa14.32□□□□□ -0.12
UBR4-208ENST00000459947 MARCH10Q8NA82 808 aaPredicted RBP14.3□□□□□ -0.12
UBR4-208ENST00000459947 BCL11BQ9C0K0 894 aaPredicted RBP14.3□□□□□ -0.12
UBR4-208ENST00000459947 IFNL2Q8IZJ0 200 aa14.3□□□□□ -0.12
UBR4-208ENST00000459947 TNS1Q9HBL0 1735 aaKnown RBP14.3□□□□□ -0.12
UBR4-208ENST00000459947 USHBP1Q8N6Y0 703 aa14.29□□□□□ -0.12
UBR4-208ENST00000459947 SHANK3Q9BYB0 1731 aa14.29□□□□□ -0.12
UBR4-208ENST00000459947 ANP32CO43423 234 aa14.29□□□□□ -0.12
UBR4-208ENST00000459947 SBF2Q86WG5 1849 aa14.29□□□□□ -0.12
UBR4-208ENST00000459947 SULT6B1Q6IMI4 303 aa14.28□□□□□ -0.12
UBR4-208ENST00000459947 NKX1-1Q15270 411 aaPredicted RBP14.28□□□□□ -0.12
UBR4-208ENST00000459947 C1orf141Q5JVX7 400 aa14.28□□□□□ -0.12
UBR4-208ENST00000459947 PRKRIP1Q9H875 184 aaPredicted RBP14.28□□□□□ -0.12
UBR4-208ENST00000459947 GAS2L2Q8NHY3 880 aa14.28□□□□□ -0.12
UBR4-208ENST00000459947 U2SURPO15042 1029 aaKnown RBP14.27□□□□□ -0.13
UBR4-208ENST00000459947 FCHSD2O94868 740 aa14.27□□□□□ -0.13
UBR4-208ENST00000459947 DDX54Q8TDD1 881 aaKnown RBP14.27□□□□□ -0.13
UBR4-208ENST00000459947 CNGB1Q14028 1251 aaPredicted RBP14.26□□□□□ -0.13
UBR4-208ENST00000459947 PLSCR1O15162 318 aa14.25□□□□□ -0.13
UBR4-208ENST00000459947 ZNF530Q6P9A1 599 aaPredicted RBP14.25□□□□□ -0.13
UBR4-208ENST00000459947 SMARCC1Q92922 1105 aaPredicted RBP14.25□□□□□ -0.13
UBR4-208ENST00000459947 DCAF5Q96JK2 942 aa14.24□□□□□ -0.13
UBR4-208ENST00000459947 TRIM37O94972 964 aa14.24□□□□□ -0.13
UBR4-208ENST00000459947 DOT1LQ8TEK3 1739 aa14.24□□□□□ -0.13
UBR4-208ENST00000459947 U2AF1L5P0DN76 240 aaPredicted RBP14.24□□□□□ -0.13
UBR4-208ENST00000459947 PHKG2P15735 406 aa14.24□□□□□ -0.13
UBR4-208ENST00000459947 U2AF1Q01081 240 aaKnown RBP eCLIP14.24□□□□□ -0.13
UBR4-208ENST00000459947 AKAP4Q5JQC9 854 aa14.24□□□□□ -0.13
UBR4-208ENST00000459947 APBA3O96018 575 aa14.23□□□□□ -0.13
UBR4-208ENST00000459947 ERVV-2B6SEH9 535 aa14.23□□□□□ -0.13
UBR4-208ENST00000459947 WDR43Q15061 677 aaKnown RBP eCLIP14.22□□□□□ -0.13
UBR4-208ENST00000459947 CYP27B1O15528 508 aa14.21□□□□□ -0.13
UBR4-208ENST00000459947 HTATSF1O43719 755 aaKnown RBP14.21□□□□□ -0.13
UBR4-208ENST00000459947 AEBP1Q8IUX7 1158 aa14.21□□□□□ -0.13
UBR4-208ENST00000459947 RREB1Q92766 1687 aa14.21□□□□□ -0.13
UBR4-208ENST00000459947 MAPK8IP3Q9UPT6 1336 aa14.21□□□□□ -0.14
UBR4-208ENST00000459947 RSPH6AQ9H0K4 717 aa14.2□□□□□ -0.14
UBR4-208ENST00000459947 BTAF1O14981 1849 aa14.2□□□□□ -0.14
UBR4-208ENST00000459947 HMOX1P09601 288 aa14.2□□□□□ -0.14
UBR4-208ENST00000459947 NBPF14Q5TI25 921 aa14.2□□□□□ -0.14
UBR4-208ENST00000459947 SLC27A3Q5K4L6 730 aa14.19□□□□□ -0.14
UBR4-208ENST00000459947 FAM182BQ5T319 152 aa14.19□□□□□ -0.14
UBR4-208ENST00000459947 TMOD3Q9NYL9 352 aa14.19□□□□□ -0.14
UBR4-208ENST00000459947 MAP3K5Q99683 1374 aa14.19□□□□□ -0.14
UBR4-208ENST00000459947 PRKAR2BP31323 418 aa14.19□□□□□ -0.14
UBR4-208ENST00000459947 LMOD3Q0VAK6 560 aa14.18□□□□□ -0.14
UBR4-208ENST00000459947 CAMKK2Q96RR4 588 aa14.18□□□□□ -0.14
UBR4-208ENST00000459947 ADAMTS7Q9UKP4 1686 aa14.18□□□□□ -0.14
UBR4-208ENST00000459947 SCN11AQ9UI33 1791 aa14.18□□□□□ -0.14
UBR4-208ENST00000459947 MRC1P22897 1456 aa14.18□□□□□ -0.14
UBR4-208ENST00000459947 PRIM1P49642 420 aaKnown RBP14.17□□□□□ -0.14
UBR4-208ENST00000459947 ACSBG1Q96GR2 724 aa14.17□□□□□ -0.14
UBR4-208ENST00000459947 GNAT3A8MTJ3 354 aa14.16□□□□□ -0.14
UBR4-208ENST00000459947 ITGB4P16144 1822 aa14.16□□□□□ -0.14
UBR4-208ENST00000459947 CABP4P57796 275 aa14.16□□□□□ -0.14
UBR4-208ENST00000459947 SYTL4Q96C24 671 aaPredicted RBP14.16□□□□□ -0.14
UBR4-208ENST00000459947 TOGARAM1Q9Y4F4 1720 aa14.16□□□□□ -0.14
UBR4-208ENST00000459947 RTF1Q92541 710 aaKnown RBP14.16□□□□□ -0.14
UBR4-208ENST00000459947 ZNF831Q5JPB2 1677 aa14.15□□□□□ -0.14
UBR4-208ENST00000459947 EN1Q05925 392 aaPredicted RBP14.15□□□□□ -0.14
UBR4-208ENST00000459947 MTHFSDQ2M296 383 aaKnown RBP14.15□□□□□ -0.14
UBR4-208ENST00000459947 LY75O60449 1722 aa14.15□□□□□ -0.14
UBR4-208ENST00000459947 NUP188Q5SRE5 1749 aa14.14□□□□□ -0.15
UBR4-208ENST00000459947 KDM6AO15550 1401 aaPredicted RBP14.14□□□□□ -0.15
UBR4-208ENST00000459947 RNMTO43148 476 aaKnown RBP14.14□□□□□ -0.15
UBR4-208ENST00000459947 DEFB132Q7Z7B7 95 aa14.14□□□□□ -0.15
UBR4-208ENST00000459947 RUNDC1Q96C34 613 aa14.14□□□□□ -0.15
UBR4-208ENST00000459947 NFE2L2Q16236 605 aa14.13□□□□□ -0.15
UBR4-208ENST00000459947 TXNRD1Q16881 649 aa14.13□□□□□ -0.15
UBR4-208ENST00000459947 STK32BQ9NY57 414 aa14.13□□□□□ -0.15
UBR4-208ENST00000459947 KAT6BQ8WYB5 2073 aa14.13□□□□□ -0.15
UBR4-208ENST00000459947 TEFQ10587 303 aa14.13□□□□□ -0.15
UBR4-208ENST00000459947 EZH2Q15910 746 aaKnown RBP14.13□□□□□ -0.15
UBR4-208ENST00000459947 NCBP3Q53F19 620 aaKnown RBP14.13□□□□□ -0.15
UBR4-208ENST00000459947 PALLDQ8WX93 1383 aa14.12□□□□□ -0.15
UBR4-208ENST00000459947 KCNQ2O43526 872 aa14.12□□□□□ -0.15
UBR4-208ENST00000459947 PNISRQ8TF01 805 aaKnown RBP14.12□□□□□ -0.15
UBR4-208ENST00000459947 MPRIPQ6WCQ1 1025 aa14.12□□□□□ -0.15
UBR4-208ENST00000459947 NGEFQ8N5V2 710 aa14.12□□□□□ -0.15
UBR4-208ENST00000459947 SLC52A2Q9HAB3 445 aa14.12□□□□□ -0.15
UBR4-208ENST00000459947 CICQ96RK0 1608 aaPredicted RBP14.11□□□□□ -0.15
UBR4-208ENST00000459947 MRS2Q9HD23 443 aa14.11□□□□□ -0.15
UBR4-208ENST00000459947 PLEKHF1Q96S99 279 aa14.1□□□□□ -0.15
UBR4-208ENST00000459947 VIRMAQ69YN4 1812 aaKnown RBP14.1□□□□□ -0.15
UBR4-208ENST00000459947 CCER2I3L3R5 266 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms