RNA–Protein interactions for RNA: ENST00000454849.5

MSH2-203, Transcript of mutS homolog 2, humanhuman

TSL 4

Gene MSH2, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-203ENST00000454849 EYA1Q99502 592 aa33.94■■■■□ 3.02
MSH2-203ENST00000454849 TATP17735 454 aaPredicted RBP33.93■■■■□ 3.02
MSH2-203ENST00000454849 BCL9O00512 1426 aa33.92■■■■□ 3.02
MSH2-203ENST00000454849 KAT6BQ8WYB5 2073 aa33.89■■■■□ 3.02
MSH2-203ENST00000454849 R3HDM1Q15032 1099 aaKnown RBP33.88■■■■□ 3.01
MSH2-203ENST00000454849 PLSCR1O15162 318 aa33.84■■■■□ 3.01
MSH2-203ENST00000454849 SYTL4Q96C24 671 aaPredicted RBP33.84■■■■□ 3.01
MSH2-203ENST00000454849 PARD3Q8TEW0 1356 aa33.84■■■■□ 3.01
MSH2-203ENST00000454849 PROM2Q8N271 834 aa33.83■■■■□ 3.01
MSH2-203ENST00000454849 PRIM1P49642 420 aaKnown RBP33.82■■■■□ 3
MSH2-203ENST00000454849 MTHFSP49914 203 aa33.81■■■■□ 3
MSH2-203ENST00000454849 SHANK3Q9BYB0 1731 aa33.81■■■■□ 3
MSH2-203ENST00000454849 CYP27B1O15528 508 aa33.78■■■■□ 3
MSH2-203ENST00000454849 NCAPD2Q15021 1401 aa33.78■■■■□ 3
MSH2-203ENST00000454849 NHSQ6T4R5 1651 aa33.77■■■■□ 3
MSH2-203ENST00000454849 TXNRD1Q16881 649 aa33.76■■■□□ 2.99
MSH2-203ENST00000454849 RREB1Q92766 1687 aa33.76■■■□□ 2.99
MSH2-203ENST00000454849 PCDH11XQ9BZA7 1347 aa33.76■■■□□ 2.99
MSH2-203ENST00000454849 PCDH11YQ9BZA8 1340 aa33.76■■■□□ 2.99
MSH2-203ENST00000454849 NUP188Q5SRE5 1749 aa33.76■■■□□ 2.99
MSH2-203ENST00000454849 NBPF14Q5TI25 921 aa33.75■■■□□ 2.99
MSH2-203ENST00000454849 AEBP1Q8IUX7 1158 aa33.75■■■□□ 2.99
MSH2-203ENST00000454849 IGSF1Q8N6C5 1336 aa33.75■■■□□ 2.99
MSH2-203ENST00000454849 SPG7Q9UQ90 795 aa33.73■■■□□ 2.99
MSH2-203ENST00000454849 IL13P35225 146 aa33.72■■■□□ 2.99
MSH2-203ENST00000454849 ANO8Q9HCE9 1232 aaPredicted RBP33.72■■■□□ 2.99
MSH2-203ENST00000454849 BTAF1O14981 1849 aa33.71■■■□□ 2.99
MSH2-203ENST00000454849 NPC1L1Q9UHC9 1359 aa33.71■■■□□ 2.99
MSH2-203ENST00000454849 SRCAPQ6ZRS2 3230 aa33.7■■■□□ 2.99
MSH2-203ENST00000454849 DOT1LQ8TEK3 1739 aa33.7■■■□□ 2.98
MSH2-203ENST00000454849 SULT6B1Q6IMI4 303 aa33.69■■■□□ 2.98
MSH2-203ENST00000454849 KCNQ4P56696 695 aa33.68■■■□□ 2.98
MSH2-203ENST00000454849 MPRIPQ6WCQ1 1025 aa33.65■■■□□ 2.98
MSH2-203ENST00000454849 RGPD3A6NKT7 1758 aaPredicted RBP33.65■■■□□ 2.98
MSH2-203ENST00000454849 RGPD4Q7Z3J3 1758 aa33.65■■■□□ 2.98
MSH2-203ENST00000454849 PKD1L3Q7Z443 1732 aa33.64■■■□□ 2.98
MSH2-203ENST00000454849 LRRC4BQ9NT99 713 aa33.63■■■□□ 2.97
MSH2-203ENST00000454849 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP33.63■■■□□ 2.974e-8■■■□□ 17
MSH2-203ENST00000454849 HMOX1P09601 288 aa33.62■■■□□ 2.97
MSH2-203ENST00000454849 PHKG2P15735 406 aa33.62■■■□□ 2.97
MSH2-203ENST00000454849 DIAPH1O60610 1272 aaKnown RBP33.61■■■□□ 2.97
MSH2-203ENST00000454849 PLEKHO1Q53GL0 409 aaPredicted RBP33.6■■■□□ 2.97
MSH2-203ENST00000454849 IFNL2Q8IZJ0 200 aa33.6■■■□□ 2.97
MSH2-203ENST00000454849 NKX1-1Q15270 411 aaPredicted RBP33.59■■■□□ 2.97
MSH2-203ENST00000454849 PDGFDQ9GZP0 370 aaPredicted RBP33.59■■■□□ 2.97
MSH2-203ENST00000454849 STK32BQ9NY57 414 aa33.59■■■□□ 2.97
MSH2-203ENST00000454849 ZNF530Q6P9A1 599 aaPredicted RBP33.58■■■□□ 2.97
MSH2-203ENST00000454849 DDX10Q13206 875 aaKnown RBP33.56■■■□□ 2.96
MSH2-203ENST00000454849 PIGBQ92521 554 aa33.56■■■□□ 2.96
MSH2-203ENST00000454849 U2SURPO15042 1029 aaKnown RBP33.55■■■□□ 2.96
MSH2-203ENST00000454849 PPP2R1AP30153 589 aa33.55■■■□□ 2.96
MSH2-203ENST00000454849 TOGARAM1Q9Y4F4 1720 aa33.55■■■□□ 2.96
MSH2-203ENST00000454849 SLC15A2Q16348 729 aa33.54■■■□□ 2.96
MSH2-203ENST00000454849 ZNF827Q17R98 1081 aa33.52■■■□□ 2.96
MSH2-203ENST00000454849 AMOTQ4VCS5 1084 aa33.52■■■□□ 2.96
MSH2-203ENST00000454849 KDRP35968 1356 aa33.51■■■□□ 2.96
MSH2-203ENST00000454849 CCNL1Q9UK58 526 aaPredicted RBP33.51■■■□□ 2.95
MSH2-203ENST00000454849 SLC27A3Q5K4L6 730 aa33.5■■■□□ 2.95
MSH2-203ENST00000454849 COL3A1P02461 1466 aaPredicted RBP33.5■■■□□ 2.95
MSH2-203ENST00000454849 TMOD3Q9NYL9 352 aa33.49■■■□□ 2.95
MSH2-203ENST00000454849 ITGB4P16144 1822 aa33.48■■■□□ 2.95
MSH2-203ENST00000454849 C1orf141Q5JVX7 400 aa33.47■■■□□ 2.95
MSH2-203ENST00000454849 CFAP53Q96M91 514 aa33.47■■■□□ 2.95
MSH2-203ENST00000454849 PALLDQ8WX93 1383 aa33.47■■■□□ 2.95
MSH2-203ENST00000454849 ZBTB7AO95365 584 aa33.46■■■□□ 2.95
MSH2-203ENST00000454849 ZEB1P37275 1124 aaPredicted RBP33.46■■■□□ 2.95
MSH2-203ENST00000454849 ASAP1Q9ULH1 1129 aa33.46■■■□□ 2.95
MSH2-203ENST00000454849 DCAF5Q96JK2 942 aa33.44■■■□□ 2.94
MSH2-203ENST00000454849 AKT1S1Q96B36 256 aa33.43■■■□□ 2.94
MSH2-203ENST00000454849 PAPPAQ13219 1627 aa33.42■■■□□ 2.94
MSH2-203ENST00000454849 HSP90AB1P08238 724 aaKnown RBP33.42■■■□□ 2.94
MSH2-203ENST00000454849 PLEKHG2Q9H7P9 1386 aa33.42■■■□□ 2.94
MSH2-203ENST00000454849 KDM6AO15550 1401 aaPredicted RBP33.42■■■□□ 2.94
MSH2-203ENST00000454849 LY75O60449 1722 aa33.42■■■□□ 2.94
MSH2-203ENST00000454849 SMARCC1Q92922 1105 aaPredicted RBP33.41■■■□□ 2.94
MSH2-203ENST00000454849 ATF5Q9Y2D1 282 aaPredicted RBP33.41■■■□□ 2.94
MSH2-203ENST00000454849 MTHFSDQ2M296 383 aaKnown RBP33.4■■■□□ 2.94
MSH2-203ENST00000454849 LRP5O75197 1615 aa33.39■■■□□ 2.94
MSH2-203ENST00000454849 ERVV-2B6SEH9 535 aa33.39■■■□□ 2.94
MSH2-203ENST00000454849 CABP4P57796 275 aa33.39■■■□□ 2.94
MSH2-203ENST00000454849 SPON1Q9HCB6 807 aa33.39■■■□□ 2.94
MSH2-203ENST00000454849 ATG3Q9NT62 314 aa33.39■■■□□ 2.94
MSH2-203ENST00000454849 TFCP2L1Q9NZI6 479 aa33.39■■■□□ 2.94
MSH2-203ENST00000454849 LGR6Q9HBX8 967 aa33.37■■■□□ 2.93
MSH2-203ENST00000454849 CASZ1Q86V15 1759 aa33.35■■■□□ 2.93
MSH2-203ENST00000454849 U2AF1L5P0DN76 240 aaPredicted RBP33.35■■■□□ 2.93
MSH2-203ENST00000454849 U2AF1Q01081 240 aaKnown RBP eCLIP33.35■■■□□ 2.93
MSH2-203ENST00000454849 AKAP4Q5JQC9 854 aa33.35■■■□□ 2.93
MSH2-203ENST00000454849 NFATC2IPQ8NCF5 419 aa33.35■■■□□ 2.93
MSH2-203ENST00000454849 NUDCQ9Y266 331 aa33.34■■■□□ 2.93
MSH2-203ENST00000454849 LOC102724428A0A0B4J2F2 783 aa33.33■■■□□ 2.93
MSH2-203ENST00000454849 SIK1P57059 783 aa33.33■■■□□ 2.93
MSH2-203ENST00000454849 PRKAR2BP31323 418 aa33.32■■■□□ 2.92
MSH2-203ENST00000454849 PHACTR3Q96KR7 559 aa33.32■■■□□ 2.92
MSH2-203ENST00000454849 PNPLA7Q6ZV29 1317 aa33.31■■■□□ 2.92
MSH2-203ENST00000454849 SMIM5Q71RC9 77 aa33.31■■■□□ 2.92
MSH2-203ENST00000454849 RBM42Q9BTD8 480 aaKnown RBP33.31■■■□□ 2.92
MSH2-203ENST00000454849 RSPH6AQ9H0K4 717 aa33.3■■■□□ 2.92
MSH2-203ENST00000454849 PPP1R1BQ9UD71 204 aaPredicted RBP33.3■■■□□ 2.92
MSH2-203ENST00000454849 RNMTO43148 476 aaKnown RBP33.29■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms