RNA–Protein interactions for RNA: ENST00000454428.5

UBE2D4-209, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 3

Gene UBE2D4, Length 288 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-209ENST00000454428 RGPD2P0DJD1 1756 aa24.59■■□□□ 1.53
UBE2D4-209ENST00000454428 SLC12A5Q9H2X9 1139 aa24.59■■□□□ 1.53
UBE2D4-209ENST00000454428 SYTL4Q96C24 671 aaPredicted RBP24.58■■□□□ 1.53
UBE2D4-209ENST00000454428 A0A1W2PP64 1363 aa24.57■■□□□ 1.52
UBE2D4-209ENST00000454428 COL23A1Q86Y22 540 aaPredicted RBP24.57■■□□□ 1.52
UBE2D4-209ENST00000454428 ATP10DQ9P241 1426 aa24.56■■□□□ 1.52
UBE2D4-209ENST00000454428 GRIN3BO60391 1043 aa24.56■■□□□ 1.52
UBE2D4-209ENST00000454428 TMC1Q8TDI8 760 aa24.56■■□□□ 1.52
UBE2D4-209ENST00000454428 LTV1Q96GA3 475 aaPredicted RBP24.56■■□□□ 1.52
UBE2D4-209ENST00000454428 MEGF6O75095 1541 aa24.56■■□□□ 1.52
UBE2D4-209ENST00000454428 HDGFL2Q7Z4V5 671 aaPredicted RBP24.55■■□□□ 1.52
UBE2D4-209ENST00000454428 CCNL1Q9UK58 526 aaPredicted RBP24.54■■□□□ 1.52
UBE2D4-209ENST00000454428 C5P01031 1676 aa24.52■■□□□ 1.52
UBE2D4-209ENST00000454428 MSL1Q68DK7 614 aa24.51■■□□□ 1.51
UBE2D4-209ENST00000454428 MAP3K19Q56UN5 1328 aa24.51■■□□□ 1.51
UBE2D4-209ENST00000454428 FBLN1P23142 703 aa24.5■■□□□ 1.51
UBE2D4-209ENST00000454428 HOXC9P31274 260 aa24.5■■□□□ 1.51
UBE2D4-209ENST00000454428 ZCRB1Q8TBF4 217 aaKnown RBP24.5■■□□□ 1.51
UBE2D4-209ENST00000454428 ADCY9O60503 1353 aa24.5■■□□□ 1.51
UBE2D4-209ENST00000454428 NEUROD1Q13562 356 aa24.49■■□□□ 1.51
UBE2D4-209ENST00000454428 MSH5O43196 834 aa24.48■■□□□ 1.51
UBE2D4-209ENST00000454428 TAF1LQ8IZX4 1826 aa24.48■■□□□ 1.51
UBE2D4-209ENST00000454428 TERF2IPQ9NYB0 399 aa24.48■■□□□ 1.51
UBE2D4-209ENST00000454428 USP47Q96K76 1375 aa24.46■■□□□ 1.51
UBE2D4-209ENST00000454428 CARD11Q9BXL7 1154 aa24.45■■□□□ 1.5
UBE2D4-209ENST00000454428 CD2APQ9Y5K6 639 aa24.45■■□□□ 1.5
UBE2D4-209ENST00000454428 TOGARAM1Q9Y4F4 1720 aa24.44■■□□□ 1.5
UBE2D4-209ENST00000454428 NBPF6Q5VWK0 638 aa24.43■■□□□ 1.5
UBE2D4-209ENST00000454428 NBPF4Q96M43 638 aa24.43■■□□□ 1.5
UBE2D4-209ENST00000454428 GPBP1L1Q9HC44 474 aaPredicted RBP24.43■■□□□ 1.5
UBE2D4-209ENST00000454428 AMIGO3Q86WK7 504 aa24.42■■□□□ 1.5
UBE2D4-209ENST00000454428 PUS7Q96PZ0 661 aaKnown RBP24.42■■□□□ 1.5
UBE2D4-209ENST00000454428 HSPA6P17066 643 aa24.41■■□□□ 1.5
UBE2D4-209ENST00000454428 AMPHP49418 695 aa24.4■■□□□ 1.5
UBE2D4-209ENST00000454428 USHBP1Q8N6Y0 703 aa24.4■■□□□ 1.5
UBE2D4-209ENST00000454428 COG3Q96JB2 828 aa24.4■■□□□ 1.5
UBE2D4-209ENST00000454428 C4BP0C0L5 1744 aa24.39■■□□□ 1.5
UBE2D4-209ENST00000454428 ZNF526Q8TF50 670 aaPredicted RBP24.39■■□□□ 1.49
UBE2D4-209ENST00000454428 RTL1A6NKG5 1358 aa24.38■■□□□ 1.49
UBE2D4-209ENST00000454428 UBR3Q6ZT12 1888 aa24.38■■□□□ 1.49
UBE2D4-209ENST00000454428 PALLDQ8WX93 1383 aa24.38■■□□□ 1.49
UBE2D4-209ENST00000454428 CGNL1Q0VF96 1302 aa24.37■■□□□ 1.49
UBE2D4-209ENST00000454428 ITGB4P16144 1822 aa24.36■■□□□ 1.49
UBE2D4-209ENST00000454428 RRS1Q15050 365 aaKnown RBP24.36■■□□□ 1.49
UBE2D4-209ENST00000454428 SMIM5Q71RC9 77 aa24.35■■□□□ 1.49
UBE2D4-209ENST00000454428 FLAD1Q8NFF5 587 aa24.35■■□□□ 1.49
UBE2D4-209ENST00000454428 TESK2Q96S53 571 aa24.35■■□□□ 1.49
UBE2D4-209ENST00000454428 IGSF1Q8N6C5 1336 aa24.34■■□□□ 1.49
UBE2D4-209ENST00000454428 WWC3Q9ULE0 1092 aa24.33■■□□□ 1.49
UBE2D4-209ENST00000454428 MAP2P11137 1827 aaKnown RBP24.33■■□□□ 1.48
UBE2D4-209ENST00000454428 RAPGEF4Q8WZA2 1011 aa24.32■■□□□ 1.48
UBE2D4-209ENST00000454428 KIF3CO14782 793 aa24.31■■□□□ 1.48
UBE2D4-209ENST00000454428 CYP27B1O15528 508 aa24.31■■□□□ 1.48
UBE2D4-209ENST00000454428 MPRIPQ6WCQ1 1025 aa24.31■■□□□ 1.48
UBE2D4-209ENST00000454428 PCDH11XQ9BZA7 1347 aa24.31■■□□□ 1.48
UBE2D4-209ENST00000454428 PCDH11YQ9BZA8 1340 aa24.31■■□□□ 1.48
UBE2D4-209ENST00000454428 CICQ96RK0 1608 aaPredicted RBP24.3■■□□□ 1.48
UBE2D4-209ENST00000454428 FYB1O15117 783 aa24.29■■□□□ 1.48
UBE2D4-209ENST00000454428 TATP17735 454 aaPredicted RBP24.29■■□□□ 1.48
UBE2D4-209ENST00000454428 PKD1L3Q7Z443 1732 aa24.29■■□□□ 1.48
UBE2D4-209ENST00000454428 HSP90AB2PQ58FF8 381 aa24.28■■□□□ 1.48
UBE2D4-209ENST00000454428 GGNBP2Q9H3C7 697 aa24.28■■□□□ 1.48
UBE2D4-209ENST00000454428 SMG6Q86US8 1419 aaKnown RBP24.27■■□□□ 1.48
UBE2D4-209ENST00000454428 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP24.27■■□□□ 1.48
UBE2D4-209ENST00000454428 PHF14O94880 888 aa24.27■■□□□ 1.48
UBE2D4-209ENST00000454428 AK7Q96M32 723 aa24.27■■□□□ 1.48
UBE2D4-209ENST00000454428 INSRP06213 1382 aa24.27■■□□□ 1.48
UBE2D4-209ENST00000454428 KIAA1551Q9HCM1 1747 aa24.27■■□□□ 1.48
UBE2D4-209ENST00000454428 ST20-MTHFSA0A0A6YYL1 179 aa24.25■■□□□ 1.47
UBE2D4-209ENST00000454428 PIGBQ92521 554 aa24.25■■□□□ 1.47
UBE2D4-209ENST00000454428 HMGB2P26583 209 aaKnown RBP24.24■■□□□ 1.47
UBE2D4-209ENST00000454428 LINC00116Q8NCU8 138 aa24.24■■□□□ 1.47
UBE2D4-209ENST00000454428 SMARCC1Q92922 1105 aaPredicted RBP24.24■■□□□ 1.47
UBE2D4-209ENST00000454428 KIF13BQ9NQT8 1826 aa24.24■■□□□ 1.47
UBE2D4-209ENST00000454428 NCAPD2Q15021 1401 aa24.22■■□□□ 1.47
UBE2D4-209ENST00000454428 SSFA2P28290 1259 aa24.22■■□□□ 1.47
UBE2D4-209ENST00000454428 KIF20BQ96Q89 1820 aa24.21■■□□□ 1.47
UBE2D4-209ENST00000454428 NSD3Q9BZ95 1437 aa24.21■■□□□ 1.47
UBE2D4-209ENST00000454428 FLT4P35916 1363 aa24.21■■□□□ 1.47
UBE2D4-209ENST00000454428 NKX1-1Q15270 411 aaPredicted RBP24.2■■□□□ 1.46
UBE2D4-209ENST00000454428 DNAJC5GQ8N7S2 189 aa24.2■■□□□ 1.46
UBE2D4-209ENST00000454428 PXDNLA1KZ92 1463 aa24.19■■□□□ 1.46
UBE2D4-209ENST00000454428 N4BP2Q86UW6 1770 aaPredicted RBP24.19■■□□□ 1.46
UBE2D4-209ENST00000454428 LOC102724428A0A0B4J2F2 783 aa24.19■■□□□ 1.46
UBE2D4-209ENST00000454428 SIK1P57059 783 aa24.19■■□□□ 1.46
UBE2D4-209ENST00000454428 KIF24Q5T7B8 1368 aa24.18■■□□□ 1.46
UBE2D4-209ENST00000454428 PCNTO95613 3336 aa24.18■■□□□ 1.46
UBE2D4-209ENST00000454428 ITPK1Q13572 414 aa24.18■■□□□ 1.46
UBE2D4-209ENST00000454428 APLP1P51693 650 aa24.16■■□□□ 1.46
UBE2D4-209ENST00000454428 ASAP1Q9ULH1 1129 aa24.15■■□□□ 1.46
UBE2D4-209ENST00000454428 TONSLQ96HA7 1378 aa24.15■■□□□ 1.46
UBE2D4-209ENST00000454428 GNPATO15228 680 aa24.14■■□□□ 1.45
UBE2D4-209ENST00000454428 EMILIN1Q9Y6C2 1016 aa24.14■■□□□ 1.45
UBE2D4-209ENST00000454428 ANKRD26Q9UPS8 1709 aa24.13■■□□□ 1.45
UBE2D4-209ENST00000454428 MMP10P09238 476 aa24.13■■□□□ 1.45
UBE2D4-209ENST00000454428 BRCA1P38398 1863 aaKnown RBP24.13■■□□□ 1.45
UBE2D4-209ENST00000454428 TOMM70O94826 608 aa24.12■■□□□ 1.45
UBE2D4-209ENST00000454428 C10orf71Q711Q0 1435 aa24.11■■□□□ 1.45
UBE2D4-209ENST00000454428 WDR90Q96KV7 1748 aa24.1■■□□□ 1.45
UBE2D4-209ENST00000454428 SLC24A1O60721 1099 aa24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms