RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 CFAP53Q96M91 514 aa37.69■■■■□ 3.62
SMARCC1-203ENST00000454240 PKD1L3Q7Z443 1732 aa37.68■■■■□ 3.62
SMARCC1-203ENST00000454240 CCDC125Q86Z20 511 aa37.68■■■■□ 3.62
SMARCC1-203ENST00000454240 BCL9O00512 1426 aa37.68■■■■□ 3.62
SMARCC1-203ENST00000454240 KDRP35968 1356 aa37.66■■■■□ 3.62
SMARCC1-203ENST00000454240 SULT6B1Q6IMI4 303 aa37.64■■■■□ 3.62
SMARCC1-203ENST00000454240 AEBP1Q8IUX7 1158 aa37.64■■■■□ 3.62
SMARCC1-203ENST00000454240 PLEKHG2Q9H7P9 1386 aa37.64■■■■□ 3.62
SMARCC1-203ENST00000454240 DDX54Q8TDD1 881 aaKnown RBP37.63■■■■□ 3.61
SMARCC1-203ENST00000454240 PRKRIP1Q9H875 184 aaPredicted RBP37.63■■■■□ 3.61
SMARCC1-203ENST00000454240 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP37.61■■■■□ 3.612e-9■■□□□ 12.3
SMARCC1-203ENST00000454240 MYBBP1AQ9BQG0 1328 aaKnown RBP37.61■■■■□ 3.61
SMARCC1-203ENST00000454240 TNS1Q9HBL0 1735 aaKnown RBP37.59■■■■□ 3.61
SMARCC1-203ENST00000454240 TRIM37O94972 964 aa37.58■■■■□ 3.61
SMARCC1-203ENST00000454240 SPG7Q9UQ90 795 aa37.57■■■■□ 3.6
SMARCC1-203ENST00000454240 PCDH11XQ9BZA7 1347 aa37.57■■■■□ 3.6
SMARCC1-203ENST00000454240 PCDH11YQ9BZA8 1340 aa37.57■■■■□ 3.6
SMARCC1-203ENST00000454240 U2SURPO15042 1029 aaKnown RBP37.56■■■■□ 3.6
SMARCC1-203ENST00000454240 HMOX1P09601 288 aa37.55■■■■□ 3.6
SMARCC1-203ENST00000454240 NUDCQ9Y266 331 aa37.54■■■■□ 3.6
SMARCC1-203ENST00000454240 KAT6BQ8WYB5 2073 aa37.53■■■■□ 3.6
SMARCC1-203ENST00000454240 CYP27B1O15528 508 aa37.53■■■■□ 3.6
SMARCC1-203ENST00000454240 SF3B2Q13435 895 aaKnown RBP37.53■■■■□ 3.6
SMARCC1-203ENST00000454240 NHSQ6T4R5 1651 aa37.5■■■■□ 3.59
SMARCC1-203ENST00000454240 PLEKHO1Q53GL0 409 aaPredicted RBP37.5■■■■□ 3.59
SMARCC1-203ENST00000454240 AMOTQ4VCS5 1084 aa37.49■■■■□ 3.59
SMARCC1-203ENST00000454240 BCL11BQ9C0K0 894 aaPredicted RBP37.48■■■■□ 3.59
SMARCC1-203ENST00000454240 DOT1LQ8TEK3 1739 aa37.47■■■■□ 3.59
SMARCC1-203ENST00000454240 PTF1AQ7RTS3 328 aa37.46■■■■□ 3.59
SMARCC1-203ENST00000454240 ACSBG1Q96GR2 724 aa37.46■■■■□ 3.59
SMARCC1-203ENST00000454240 KCNQ2O43526 872 aa37.45■■■■□ 3.59
SMARCC1-203ENST00000454240 NKX1-1Q15270 411 aaPredicted RBP37.45■■■■□ 3.59
SMARCC1-203ENST00000454240 IFNL2Q8IZJ0 200 aa37.45■■■■□ 3.59
SMARCC1-203ENST00000454240 U2AF1L5P0DN76 240 aaPredicted RBP37.44■■■■□ 3.58
SMARCC1-203ENST00000454240 PHKG2P15735 406 aa37.44■■■■□ 3.58
SMARCC1-203ENST00000454240 U2AF1Q01081 240 aaKnown RBP eCLIP37.44■■■■□ 3.58
SMARCC1-203ENST00000454240 DEFB132Q7Z7B7 95 aa37.44■■■■□ 3.58
SMARCC1-203ENST00000454240 BAG6P46379 1132 aa37.43■■■■□ 3.58
SMARCC1-203ENST00000454240 APBA3O96018 575 aa37.42■■■■□ 3.58
SMARCC1-203ENST00000454240 RSPH6AQ9H0K4 717 aa37.41■■■■□ 3.58
SMARCC1-203ENST00000454240 TOGARAM1Q9Y4F4 1720 aa37.4■■■■□ 3.58
SMARCC1-203ENST00000454240 BTAF1O14981 1849 aa37.39■■■■□ 3.58
SMARCC1-203ENST00000454240 ANP32CO43423 234 aa37.39■■■■□ 3.58
SMARCC1-203ENST00000454240 FCHSD2O94868 740 aa37.39■■■■□ 3.58
SMARCC1-203ENST00000454240 ZNF530Q6P9A1 599 aaPredicted RBP37.39■■■■□ 3.58
SMARCC1-203ENST00000454240 PRIM1P49642 420 aaKnown RBP37.37■■■■□ 3.57
SMARCC1-203ENST00000454240 EN1Q05925 392 aaPredicted RBP37.37■■■■□ 3.57
SMARCC1-203ENST00000454240 ITGB4P16144 1822 aa37.37■■■■□ 3.57
SMARCC1-203ENST00000454240 RGPD3A6NKT7 1758 aaPredicted RBP37.35■■■■□ 3.57
SMARCC1-203ENST00000454240 RGPD4Q7Z3J3 1758 aa37.35■■■■□ 3.57
SMARCC1-203ENST00000454240 PRKAR2BP31323 418 aa37.35■■■■□ 3.57
SMARCC1-203ENST00000454240 PLSCR1O15162 318 aa37.34■■■■□ 3.57
SMARCC1-203ENST00000454240 MTHFSDQ2M296 383 aaKnown RBP37.34■■■■□ 3.57
SMARCC1-203ENST00000454240 CAMKK2Q96RR4 588 aa37.34■■■■□ 3.57
SMARCC1-203ENST00000454240 HSP90AB1P08238 724 aaKnown RBP37.33■■■■□ 3.57
SMARCC1-203ENST00000454240 C1orf141Q5JVX7 400 aa37.33■■■■□ 3.57
SMARCC1-203ENST00000454240 SYTL4Q96C24 671 aaPredicted RBP37.32■■■■□ 3.56
SMARCC1-203ENST00000454240 EZH2Q15910 746 aaKnown RBP37.3■■■■□ 3.56
SMARCC1-203ENST00000454240 AKAP4Q5JQC9 854 aa37.3■■■■□ 3.56
SMARCC1-203ENST00000454240 DCAF5Q96JK2 942 aa37.3■■■■□ 3.56
SMARCC1-203ENST00000454240 PHACTR3Q96KR7 559 aa37.3■■■■□ 3.56
SMARCC1-203ENST00000454240 VIRMAQ69YN4 1812 aaKnown RBP37.29■■■■□ 3.56
SMARCC1-203ENST00000454240 SCN11AQ9UI33 1791 aa37.28■■■■□ 3.56
SMARCC1-203ENST00000454240 KDM6AO15550 1401 aaPredicted RBP37.27■■■■□ 3.56
SMARCC1-203ENST00000454240 RREB1Q92766 1687 aa37.26■■■■□ 3.56
SMARCC1-203ENST00000454240 GAS2L2Q8NHY3 880 aa37.26■■■■□ 3.56
SMARCC1-203ENST00000454240 PLEKHF1Q96S99 279 aa37.24■■■■□ 3.55
SMARCC1-203ENST00000454240 ERVV-2B6SEH9 535 aa37.23■■■■□ 3.55
SMARCC1-203ENST00000454240 MPRIPQ6WCQ1 1025 aa37.23■■■■□ 3.55
SMARCC1-203ENST00000454240 ADAMTS7Q9UKP4 1686 aa37.22■■■■□ 3.55
SMARCC1-203ENST00000454240 CCDC184Q52MB2 194 aa37.22■■■■□ 3.55
SMARCC1-203ENST00000454240 PNNQ9H307 717 aaKnown RBP37.22■■■■□ 3.55
SMARCC1-203ENST00000454240 PROM2Q8N271 834 aa37.2■■■■□ 3.55
SMARCC1-203ENST00000454240 PIGBQ92521 554 aa37.2■■■■□ 3.55
SMARCC1-203ENST00000454240 WDR43Q15061 677 aaKnown RBP eCLIP37.19■■■■□ 3.54
SMARCC1-203ENST00000454240 NUP188Q5SRE5 1749 aa37.19■■■■□ 3.54
SMARCC1-203ENST00000454240 TMOD3Q9NYL9 352 aa37.18■■■■□ 3.54
SMARCC1-203ENST00000454240 LY75O60449 1722 aa37.18■■■■□ 3.54
SMARCC1-203ENST00000454240 MAP3K5Q99683 1374 aa37.17■■■■□ 3.54
SMARCC1-203ENST00000454240 LGR6Q9HBX8 967 aa37.17■■■■□ 3.54
SMARCC1-203ENST00000454240 GNAT3A8MTJ3 354 aa37.16■■■■□ 3.54
SMARCC1-203ENST00000454240 RNMTO43148 476 aaKnown RBP37.15■■■■□ 3.54
SMARCC1-203ENST00000454240 NEFMP07197 916 aa37.15■■■■□ 3.54
SMARCC1-203ENST00000454240 TXNRD1Q16881 649 aa37.15■■■■□ 3.54
SMARCC1-203ENST00000454240 ADAMTS8Q9UP79 889 aa37.15■■■■□ 3.54
SMARCC1-203ENST00000454240 DLG5Q8TDM6 1919 aa37.14■■■■□ 3.54
SMARCC1-203ENST00000454240 CABP4P57796 275 aa37.13■■■■□ 3.53
SMARCC1-203ENST00000454240 MRC1P22897 1456 aa37.1■■■■□ 3.53
SMARCC1-203ENST00000454240 NFATC2IPQ8NCF5 419 aa37.1■■■■□ 3.53
SMARCC1-203ENST00000454240 IL17REQ8NFR9 667 aa37.1■■■■□ 3.53
SMARCC1-203ENST00000454240 MAPK8IP3Q9UPT6 1336 aa37.1■■■■□ 3.53
SMARCC1-203ENST00000454240 SMARCC1Q92922 1105 aaPredicted RBP37.09■■■■□ 3.53
SMARCC1-203ENST00000454240 MRS2Q9HD23 443 aa37.09■■■■□ 3.53
SMARCC1-203ENST00000454240 SLC52A2Q9HAB3 445 aa37.08■■■■□ 3.53
SMARCC1-203ENST00000454240 ASAP1Q9ULH1 1129 aa37.07■■■■□ 3.52
SMARCC1-203ENST00000454240 PALLDQ8WX93 1383 aa37.06■■■■□ 3.52
SMARCC1-203ENST00000454240 NFE2L2Q16236 605 aa37.06■■■■□ 3.52
SMARCC1-203ENST00000454240 SLC27A3Q5K4L6 730 aa37.06■■■■□ 3.52
SMARCC1-203ENST00000454240 ATG3Q9NT62 314 aa37.06■■■■□ 3.52
SMARCC1-203ENST00000454240 CEMIPQ8WUJ3 1361 aa37.05■■■■□ 3.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms