RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-208ENST00000451893 HSP90AB2PQ58FF8 381 aa29.78■■■□□ 2.36
C9orf3-208ENST00000451893 INSRP06213 1382 aa29.77■■■□□ 2.36
C9orf3-208ENST00000451893 KIF24Q5T7B8 1368 aa29.77■■■□□ 2.36
C9orf3-208ENST00000451893 NBPF6Q5VWK0 638 aa29.77■■■□□ 2.36
C9orf3-208ENST00000451893 PROM2Q8N271 834 aa29.77■■■□□ 2.36
C9orf3-208ENST00000451893 NBPF4Q96M43 638 aa29.77■■■□□ 2.36
C9orf3-208ENST00000451893 MEGF6O75095 1541 aa29.75■■■□□ 2.35
C9orf3-208ENST00000451893 DOT1LQ8TEK3 1739 aa29.74■■■□□ 2.35
C9orf3-208ENST00000451893 EMILIN1Q9Y6C2 1016 aa29.74■■■□□ 2.35
C9orf3-208ENST00000451893 MAP2P11137 1827 aaKnown RBP29.73■■■□□ 2.35
C9orf3-208ENST00000451893 SLC15A2Q16348 729 aa29.73■■■□□ 2.35
C9orf3-208ENST00000451893 TNNT2P45379 298 aaPredicted RBP29.7■■■□□ 2.35
C9orf3-208ENST00000451893 SHANK3Q9BYB0 1731 aa29.69■■■□□ 2.34
C9orf3-208ENST00000451893 ZBTB7AO95365 584 aa29.69■■■□□ 2.34
C9orf3-208ENST00000451893 PRIM1P49642 420 aaKnown RBP29.69■■■□□ 2.34
C9orf3-208ENST00000451893 ANKRD26Q9UPS8 1709 aa29.68■■■□□ 2.34
C9orf3-208ENST00000451893 CASZ1Q86V15 1759 aa29.68■■■□□ 2.34
C9orf3-208ENST00000451893 DCAF8L1A6NGE4 600 aa29.68■■■□□ 2.34
C9orf3-208ENST00000451893 PCDH11XQ9BZA7 1347 aa29.68■■■□□ 2.34
C9orf3-208ENST00000451893 PCDH11YQ9BZA8 1340 aa29.68■■■□□ 2.34
C9orf3-208ENST00000451893 PANK3Q9H999 370 aa29.66■■■□□ 2.34
C9orf3-208ENST00000451893 SLC27A3Q5K4L6 730 aa29.65■■■□□ 2.34
C9orf3-208ENST00000451893 ATF5Q9Y2D1 282 aaPredicted RBP29.63■■■□□ 2.33
C9orf3-208ENST00000451893 PDGFDQ9GZP0 370 aaPredicted RBP29.62■■■□□ 2.33
C9orf3-208ENST00000451893 WASHC2AQ641Q2 1341 aa29.61■■■□□ 2.33
C9orf3-208ENST00000451893 POLKQ9UBT6 870 aa29.59■■■□□ 2.33
C9orf3-208ENST00000451893 NSD2O96028 1365 aa29.58■■■□□ 2.33
C9orf3-208ENST00000451893 PAPPAQ13219 1627 aa29.58■■■□□ 2.33
C9orf3-208ENST00000451893 MTFR1LQ9H019 292 aa29.58■■■□□ 2.33
C9orf3-208ENST00000451893 LRRC4BQ9NT99 713 aa29.58■■■□□ 2.33
C9orf3-208ENST00000451893 SPG7Q9UQ90 795 aa29.58■■■□□ 2.33
C9orf3-208ENST00000451893 KNSTRNQ9Y448 316 aa29.58■■■□□ 2.33
C9orf3-208ENST00000451893 CCNL1Q9UK58 526 aaPredicted RBP29.57■■■□□ 2.32
C9orf3-208ENST00000451893 MORC1Q86VD1 984 aa29.56■■■□□ 2.32
C9orf3-208ENST00000451893 ZNF827Q17R98 1081 aa29.55■■■□□ 2.32
C9orf3-208ENST00000451893 TFCP2L1Q9NZI6 479 aa29.55■■■□□ 2.32
C9orf3-208ENST00000451893 LY75O60449 1722 aa29.54■■■□□ 2.32
C9orf3-208ENST00000451893 MPRIPQ6WCQ1 1025 aa29.54■■■□□ 2.32
C9orf3-208ENST00000451893 EYA1Q99502 592 aa29.54■■■□□ 2.32
C9orf3-208ENST00000451893 PKD1L3Q7Z443 1732 aa29.54■■■□□ 2.32
C9orf3-208ENST00000451893 KCNQ4P56696 695 aa29.53■■■□□ 2.32
C9orf3-208ENST00000451893 HMGB2P26583 209 aaKnown RBP29.51■■■□□ 2.31
C9orf3-208ENST00000451893 CYP27B1O15528 508 aa29.5■■■□□ 2.31
C9orf3-208ENST00000451893 EIF4A2Q14240 407 aaKnown RBP29.5■■■□□ 2.31
C9orf3-208ENST00000451893 MSH5O43196 834 aa29.49■■■□□ 2.31
C9orf3-208ENST00000451893 AKT1S1Q96B36 256 aa29.48■■■□□ 2.31
C9orf3-208ENST00000451893 QSER1Q2KHR3 1735 aa29.48■■■□□ 2.31
C9orf3-208ENST00000451893 ITGB4P16144 1822 aa29.48■■■□□ 2.31
C9orf3-208ENST00000451893 PTGER2P43116 358 aa29.47■■■□□ 2.31
C9orf3-208ENST00000451893 NCAPD2Q15021 1401 aa29.46■■■□□ 2.31
C9orf3-208ENST00000451893 POLD1P28340 1107 aa29.46■■■□□ 2.31
C9orf3-208ENST00000451893 SMARCC1Q92922 1105 aaPredicted RBP29.46■■■□□ 2.31
C9orf3-208ENST00000451893 PALLDQ8WX93 1383 aa29.46■■■□□ 2.31
C9orf3-208ENST00000451893 IFNL2Q8IZJ0 200 aa29.44■■■□□ 2.3
C9orf3-208ENST00000451893 KLHL34Q8N239 644 aa29.44■■■□□ 2.3
C9orf3-208ENST00000451893 SLC16A10Q8TF71 515 aa29.44■■■□□ 2.3
C9orf3-208ENST00000451893 ARXQ96QS3 562 aa29.44■■■□□ 2.3
C9orf3-208ENST00000451893 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP29.44■■■□□ 2.3
C9orf3-208ENST00000451893 KIF7Q2M1P5 1343 aa29.44■■■□□ 2.3
C9orf3-208ENST00000451893 TUBGCP6Q96RT7 1819 aa29.43■■■□□ 2.3
C9orf3-208ENST00000451893 TOGARAM1Q9Y4F4 1720 aa29.42■■■□□ 2.3
C9orf3-208ENST00000451893 C5P01031 1676 aa29.42■■■□□ 2.3
C9orf3-208ENST00000451893 FHDC1Q9C0D6 1143 aaPredicted RBP29.42■■■□□ 2.3
C9orf3-208ENST00000451893 TMOD3Q9NYL9 352 aa29.42■■■□□ 2.3
C9orf3-208ENST00000451893 PNPLA7Q6ZV29 1317 aa29.42■■■□□ 2.3
C9orf3-208ENST00000451893 IGSF1Q8N6C5 1336 aa29.39■■■□□ 2.3
C9orf3-208ENST00000451893 PHKG2P15735 406 aa29.38■■■□□ 2.29
C9orf3-208ENST00000451893 NKX1-1Q15270 411 aaPredicted RBP29.38■■■□□ 2.29
C9orf3-208ENST00000451893 PLEKHO1Q53GL0 409 aaPredicted RBP29.38■■■□□ 2.29
C9orf3-208ENST00000451893 ZNF316A6NFI3 1004 aaPredicted RBP29.37■■■□□ 2.29
C9orf3-208ENST00000451893 PIGBQ92521 554 aa29.37■■■□□ 2.29
C9orf3-208ENST00000451893 SYT17Q9BSW7 474 aa29.37■■■□□ 2.29
C9orf3-208ENST00000451893 YY1P25490 414 aa29.36■■■□□ 2.29
C9orf3-208ENST00000451893 AK7Q96M32 723 aa29.36■■■□□ 2.29
C9orf3-208ENST00000451893 HSP90AB1P08238 724 aaKnown RBP29.35■■■□□ 2.29
C9orf3-208ENST00000451893 SGIP1Q9BQI5 828 aa29.35■■■□□ 2.29
C9orf3-208ENST00000451893 TAF1LQ8IZX4 1826 aa29.35■■■□□ 2.29
C9orf3-208ENST00000451893 PLEKHG2Q9H7P9 1386 aa29.34■■■□□ 2.29
C9orf3-208ENST00000451893 CNGB1Q14028 1251 aaPredicted RBP29.33■■■□□ 2.29
C9orf3-208ENST00000451893 AMOTQ4VCS5 1084 aa29.33■■■□□ 2.29
C9orf3-208ENST00000451893 ZNF530Q6P9A1 599 aaPredicted RBP29.33■■■□□ 2.29
C9orf3-208ENST00000451893 FLAD1Q8NFF5 587 aa29.33■■■□□ 2.29
C9orf3-208ENST00000451893 C1orf141Q5JVX7 400 aa29.32■■■□□ 2.28
C9orf3-208ENST00000451893 AMER1Q5JTC6 1135 aaPredicted RBP29.31■■■□□ 2.28
C9orf3-208ENST00000451893 CC2D1BQ5T0F9 858 aaKnown RBP29.31■■■□□ 2.28
C9orf3-208ENST00000451893 SULT6B1Q6IMI4 303 aa29.3■■■□□ 2.28
C9orf3-208ENST00000451893 C4BP0C0L5 1744 aa29.3■■■□□ 2.28
C9orf3-208ENST00000451893 COL23A1Q86Y22 540 aaPredicted RBP29.29■■■□□ 2.28
C9orf3-208ENST00000451893 LOC102724428A0A0B4J2F2 783 aa29.28■■■□□ 2.28
C9orf3-208ENST00000451893 SIK1P57059 783 aa29.28■■■□□ 2.28
C9orf3-208ENST00000451893 PHF14O94880 888 aa29.27■■■□□ 2.28
C9orf3-208ENST00000451893 MSL1Q68DK7 614 aa29.27■■■□□ 2.28
C9orf3-208ENST00000451893 DCAF5Q96JK2 942 aa29.27■■■□□ 2.28
C9orf3-208ENST00000451893 ATP6V1AP38606 617 aa29.26■■■□□ 2.27
C9orf3-208ENST00000451893 AEBP1Q8IUX7 1158 aa29.26■■■□□ 2.27
C9orf3-208ENST00000451893 ASAP1Q9ULH1 1129 aa29.26■■■□□ 2.27
C9orf3-208ENST00000451893 MTHFSP49914 203 aa29.25■■■□□ 2.27
C9orf3-208ENST00000451893 CABP4P57796 275 aa29.25■■■□□ 2.27
C9orf3-208ENST00000451893 PELP1Q8IZL8 1130 aaKnown RBP29.25■■■□□ 2.27
C9orf3-208ENST00000451893 ERVV-2B6SEH9 535 aa29.24■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms