RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 PRIM1P49642 420 aaKnown RBP28.67■■■□□ 2.18
SDC1-205ENST00000447124 PPM1GO15355 546 aaPredicted RBP28.66■■■□□ 2.18
SDC1-205ENST00000447124 SLC15A2Q16348 729 aa28.66■■■□□ 2.18
SDC1-205ENST00000447124 POLKQ9UBT6 870 aa28.66■■■□□ 2.18
SDC1-205ENST00000447124 RAPGEF4Q8WZA2 1011 aa28.65■■■□□ 2.18
SDC1-205ENST00000447124 SPON1Q9HCB6 807 aa28.65■■■□□ 2.18
SDC1-205ENST00000447124 STK32BQ9NY57 414 aa28.65■■■□□ 2.18
SDC1-205ENST00000447124 SMG6Q86US8 1419 aaKnown RBP28.64■■■□□ 2.18
SDC1-205ENST00000447124 TATP17735 454 aaPredicted RBP28.64■■■□□ 2.18
SDC1-205ENST00000447124 LRRC4BQ9NT99 713 aa28.64■■■□□ 2.18
SDC1-205ENST00000447124 WASHC2AQ641Q2 1341 aa28.64■■■□□ 2.17
SDC1-205ENST00000447124 BTAF1O14981 1849 aa28.62■■■□□ 2.17
SDC1-205ENST00000447124 TNNT2P45379 298 aaPredicted RBP28.61■■■□□ 2.17
SDC1-205ENST00000447124 SYTL4Q96C24 671 aaPredicted RBP28.61■■■□□ 2.17
SDC1-205ENST00000447124 SHANK3Q9BYB0 1731 aa28.59■■■□□ 2.17
SDC1-205ENST00000447124 ZBTB7AO95365 584 aa28.58■■■□□ 2.17
SDC1-205ENST00000447124 EYA1Q99502 592 aa28.58■■■□□ 2.17
SDC1-205ENST00000447124 NSD2O96028 1365 aa28.58■■■□□ 2.17
SDC1-205ENST00000447124 MAP2P11137 1827 aaKnown RBP28.57■■■□□ 2.16
SDC1-205ENST00000447124 CYP27B1O15528 508 aa28.56■■■□□ 2.16
SDC1-205ENST00000447124 KCNQ4P56696 695 aa28.56■■■□□ 2.16
SDC1-205ENST00000447124 ZNF827Q17R98 1081 aa28.56■■■□□ 2.16
SDC1-205ENST00000447124 CASZ1Q86V15 1759 aa28.55■■■□□ 2.16
SDC1-205ENST00000447124 ATF5Q9Y2D1 282 aaPredicted RBP28.55■■■□□ 2.16
SDC1-205ENST00000447124 NCAPD2Q15021 1401 aa28.53■■■□□ 2.16
SDC1-205ENST00000447124 SLC27A3Q5K4L6 730 aa28.53■■■□□ 2.16
SDC1-205ENST00000447124 PTGER2P43116 358 aa28.52■■■□□ 2.16
SDC1-205ENST00000447124 EIF4A2Q14240 407 aaKnown RBP28.52■■■□□ 2.16
SDC1-205ENST00000447124 AKT1S1Q96B36 256 aa28.52■■■□□ 2.16
SDC1-205ENST00000447124 PPP1R1BQ9UD71 204 aaPredicted RBP28.52■■■□□ 2.16
SDC1-205ENST00000447124 PCDH11XQ9BZA7 1347 aa28.51■■■□□ 2.15
SDC1-205ENST00000447124 PCDH11YQ9BZA8 1340 aa28.51■■■□□ 2.15
SDC1-205ENST00000447124 PAPPAQ13219 1627 aa28.51■■■□□ 2.15
SDC1-205ENST00000447124 ANKRD26Q9UPS8 1709 aa28.5■■■□□ 2.15
SDC1-205ENST00000447124 DOT1LQ8TEK3 1739 aa28.49■■■□□ 2.15
SDC1-205ENST00000447124 KIF7Q2M1P5 1343 aa28.49■■■□□ 2.15
SDC1-205ENST00000447124 MORC1Q86VD1 984 aa28.47■■■□□ 2.15
SDC1-205ENST00000447124 NKX1-1Q15270 411 aaPredicted RBP28.46■■■□□ 2.15
SDC1-205ENST00000447124 SGIP1Q9BQI5 828 aa28.46■■■□□ 2.15
SDC1-205ENST00000447124 MTFR1LQ9H019 292 aa28.46■■■□□ 2.15
SDC1-205ENST00000447124 KNSTRNQ9Y448 316 aa28.46■■■□□ 2.15
SDC1-205ENST00000447124 AMER1Q5JTC6 1135 aaPredicted RBP28.44■■■□□ 2.14
SDC1-205ENST00000447124 MPRIPQ6WCQ1 1025 aa28.44■■■□□ 2.14
SDC1-205ENST00000447124 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.44■■■□□ 2.14
SDC1-205ENST00000447124 CCNL1Q9UK58 526 aaPredicted RBP28.44■■■□□ 2.14
SDC1-205ENST00000447124 SPG7Q9UQ90 795 aa28.44■■■□□ 2.14
SDC1-205ENST00000447124 PNPLA7Q6ZV29 1317 aa28.41■■■□□ 2.14
SDC1-205ENST00000447124 PIGBQ92521 554 aa28.4■■■□□ 2.14
SDC1-205ENST00000447124 IGSF1Q8N6C5 1336 aa28.4■■■□□ 2.14
SDC1-205ENST00000447124 PER1O15534 1290 aaPredicted RBP28.39■■■□□ 2.14
SDC1-205ENST00000447124 LY75O60449 1722 aa28.39■■■□□ 2.14
SDC1-205ENST00000447124 TFCP2L1Q9NZI6 479 aa28.39■■■□□ 2.14
SDC1-205ENST00000447124 PKD1L3Q7Z443 1732 aa28.38■■■□□ 2.13
SDC1-205ENST00000447124 PHKG2P15735 406 aa28.38■■■□□ 2.13
SDC1-205ENST00000447124 IFNL2Q8IZJ0 200 aa28.36■■■□□ 2.13
SDC1-205ENST00000447124 SLC16A10Q8TF71 515 aa28.34■■■□□ 2.13
SDC1-205ENST00000447124 FHDC1Q9C0D6 1143 aaPredicted RBP28.34■■■□□ 2.13
SDC1-205ENST00000447124 TOGARAM1Q9Y4F4 1720 aa28.34■■■□□ 2.13
SDC1-205ENST00000447124 PALLDQ8WX93 1383 aa28.34■■■□□ 2.13
SDC1-205ENST00000447124 AEBP1Q8IUX7 1158 aa28.33■■■□□ 2.13
SDC1-205ENST00000447124 SYT17Q9BSW7 474 aa28.33■■■□□ 2.13
SDC1-205ENST00000447124 IL13P35225 146 aa28.32■■■□□ 2.12
SDC1-205ENST00000447124 SMARCC1Q92922 1105 aaPredicted RBP28.32■■■□□ 2.12
SDC1-205ENST00000447124 ARXQ96QS3 562 aa28.32■■■□□ 2.12
SDC1-205ENST00000447124 COL23A1Q86Y22 540 aaPredicted RBP28.31■■■□□ 2.12
SDC1-205ENST00000447124 ITGB4P16144 1822 aa28.31■■■□□ 2.12
SDC1-205ENST00000447124 PLEKHO1Q53GL0 409 aaPredicted RBP28.29■■■□□ 2.12
SDC1-205ENST00000447124 ASAP1Q9ULH1 1129 aa28.29■■■□□ 2.12
SDC1-205ENST00000447124 MTHFSP49914 203 aa28.28■■■□□ 2.12
SDC1-205ENST00000447124 TMOD3Q9NYL9 352 aa28.28■■■□□ 2.12
SDC1-205ENST00000447124 CC2D1BQ5T0F9 858 aaKnown RBP28.27■■■□□ 2.12
SDC1-205ENST00000447124 SULT6B1Q6IMI4 303 aa28.27■■■□□ 2.12
SDC1-205ENST00000447124 TUBGCP6Q96RT7 1819 aa28.27■■■□□ 2.12
SDC1-205ENST00000447124 QSER1Q2KHR3 1735 aa28.26■■■□□ 2.12
SDC1-205ENST00000447124 PLEKHG2Q9H7P9 1386 aa28.26■■■□□ 2.12
SDC1-205ENST00000447124 ATG3Q9NT62 314 aa28.25■■■□□ 2.11
SDC1-205ENST00000447124 LOC102724428A0A0B4J2F2 783 aa28.24■■■□□ 2.11
SDC1-205ENST00000447124 SIK1P57059 783 aa28.24■■■□□ 2.11
SDC1-205ENST00000447124 ZNF530Q6P9A1 599 aaPredicted RBP28.24■■■□□ 2.11
SDC1-205ENST00000447124 AMIGO3Q86WK7 504 aa28.24■■■□□ 2.11
SDC1-205ENST00000447124 MSH5O43196 834 aa28.23■■■□□ 2.11
SDC1-205ENST00000447124 AMOTQ4VCS5 1084 aa28.23■■■□□ 2.11
SDC1-205ENST00000447124 SMIM5Q71RC9 77 aa28.22■■■□□ 2.11
SDC1-205ENST00000447124 DCAF8L1A6NGE4 600 aa28.21■■■□□ 2.11
SDC1-205ENST00000447124 ERVV-2B6SEH9 535 aa28.21■■■□□ 2.11
SDC1-205ENST00000447124 POLD1P28340 1107 aa28.21■■■□□ 2.11
SDC1-205ENST00000447124 DCAF5Q96JK2 942 aa28.21■■■□□ 2.11
SDC1-205ENST00000447124 HSP90AB1P08238 724 aaKnown RBP28.2■■■□□ 2.1
SDC1-205ENST00000447124 ITPK1Q13572 414 aa28.2■■■□□ 2.1
SDC1-205ENST00000447124 LINC00116Q8NCU8 138 aa28.2■■■□□ 2.1
SDC1-205ENST00000447124 KDRP35968 1356 aa28.2■■■□□ 2.1
SDC1-205ENST00000447124 HMGB2P26583 209 aaKnown RBP28.19■■■□□ 2.1
SDC1-205ENST00000447124 COL24A1Q17RW2 1714 aa28.18■■■□□ 2.1
SDC1-205ENST00000447124 TAF1LQ8IZX4 1826 aa28.18■■■□□ 2.1
SDC1-205ENST00000447124 CNGB1Q14028 1251 aaPredicted RBP28.18■■■□□ 2.1
SDC1-205ENST00000447124 MAP3K5Q99683 1374 aa28.18■■■□□ 2.1
SDC1-205ENST00000447124 KDM6AO15550 1401 aaPredicted RBP28.18■■■□□ 2.1
SDC1-205ENST00000447124 C5P01031 1676 aa28.17■■■□□ 2.1
SDC1-205ENST00000447124 MSL1Q68DK7 614 aa28.17■■■□□ 2.1
SDC1-205ENST00000447124 FLAD1Q8NFF5 587 aa28.17■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms