RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 EDC4Q6P2E9 1401 aaKnown RBP9.51□□□□□ -0.89
CDC42BPA-208ENST00000442054 SMARCC1Q92922 1105 aaPredicted RBP9.51□□□□□ -0.89
CDC42BPA-208ENST00000442054 TULP4Q9NRJ4 1543 aa9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 AMOTQ4VCS5 1084 aa9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 TMX4Q9H1E5 349 aaPredicted RBP9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 CCNL1Q9UK58 526 aaPredicted RBP9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 SPATA31A5Q5VU36 1347 aa9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 SPATA31A7Q8IWB4 1347 aa9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 ROBO1Q9Y6N7 1651 aa9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 TCERG1O14776 1098 aaKnown RBP9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 GAS2L2Q8NHY3 880 aa9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 UPF1Q92900 1129 aaKnown RBP eCLIP9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 AXIN2Q9Y2T1 843 aa9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 SPATA31A1Q5TZJ5 1347 aa9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 CARD14Q9BXL6 1004 aa9.5□□□□□ -0.89
CDC42BPA-208ENST00000442054 SPINK5Q9NQ38 1064 aaPredicted RBP9.49□□□□□ -0.89
CDC42BPA-208ENST00000442054 POLR3AO14802 1390 aaPredicted RBP9.49□□□□□ -0.89
CDC42BPA-208ENST00000442054 FLT4P35916 1363 aa9.49□□□□□ -0.89
CDC42BPA-208ENST00000442054 SETD1AO15047 1707 aaKnown RBP9.49□□□□□ -0.89
CDC42BPA-208ENST00000442054 PHLPP1O60346 1717 aa9.49□□□□□ -0.89
CDC42BPA-208ENST00000442054 RGS17Q9UGC6 210 aaPredicted RBP9.48□□□□□ -0.89
CDC42BPA-208ENST00000442054 PRKAR2BP31323 418 aa9.48□□□□□ -0.89
CDC42BPA-208ENST00000442054 NBPF6Q5VWK0 638 aa9.48□□□□□ -0.89
CDC42BPA-208ENST00000442054 NBPF4Q96M43 638 aa9.48□□□□□ -0.89
CDC42BPA-208ENST00000442054 WWC3Q9ULE0 1092 aa9.48□□□□□ -0.89
CDC42BPA-208ENST00000442054 ATF5Q9Y2D1 282 aaPredicted RBP9.48□□□□□ -0.89
CDC42BPA-208ENST00000442054 ERBB3P21860 1342 aa9.48□□□□□ -0.89
CDC42BPA-208ENST00000442054 PDE4AP27815 886 aa9.48□□□□□ -0.89
CDC42BPA-208ENST00000442054 SLFN5Q08AF3 891 aa9.48□□□□□ -0.89
CDC42BPA-208ENST00000442054 ATP6V1AP38606 617 aa9.47□□□□□ -0.89
CDC42BPA-208ENST00000442054 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.47□□□□□ -0.89
CDC42BPA-208ENST00000442054 PLIN1O60240 522 aa9.47□□□□□ -0.89
CDC42BPA-208ENST00000442054 EZH2Q15910 746 aaKnown RBP9.47□□□□□ -0.89
CDC42BPA-208ENST00000442054 CRBNQ96SW2 442 aa9.47□□□□□ -0.89
CDC42BPA-208ENST00000442054 EYA1Q99502 592 aa9.47□□□□□ -0.89
CDC42BPA-208ENST00000442054 POLKQ9UBT6 870 aa9.47□□□□□ -0.89
CDC42BPA-208ENST00000442054 AATKQ6ZMQ8 1374 aa9.47□□□□□ -0.89
CDC42BPA-208ENST00000442054 PCDH11XQ9BZA7 1347 aa9.47□□□□□ -0.89
CDC42BPA-208ENST00000442054 PCDH11YQ9BZA8 1340 aa9.47□□□□□ -0.89
CDC42BPA-208ENST00000442054 COL3A1P02461 1466 aaPredicted RBP9.47□□□□□ -0.89
CDC42BPA-208ENST00000442054 LMOD3Q0VAK6 560 aa9.46□□□□□ -0.89
CDC42BPA-208ENST00000442054 SKAP1Q86WV1 359 aa9.46□□□□□ -0.89
CDC42BPA-208ENST00000442054 DLC1Q96QB1 1528 aa9.46□□□□□ -0.89
CDC42BPA-208ENST00000442054 CCDC146Q8IYE0 955 aa9.46□□□□□ -0.89
CDC42BPA-208ENST00000442054 EIF2S2P20042 333 aaKnown RBP9.46□□□□□ -0.9
CDC42BPA-208ENST00000442054 EIF4A2Q14240 407 aaKnown RBP9.46□□□□□ -0.9
CDC42BPA-208ENST00000442054 RRP7AQ9Y3A4 280 aaKnown RBP9.46□□□□□ -0.9
CDC42BPA-208ENST00000442054 ZPR1O75312 459 aa9.45□□□□□ -0.9
CDC42BPA-208ENST00000442054 RFC4P35249 363 aa9.45□□□□□ -0.9
CDC42BPA-208ENST00000442054 GPR162Q16538 588 aa9.45□□□□□ -0.9
CDC42BPA-208ENST00000442054 BARGINQ6ZT62 677 aa9.45□□□□□ -0.9
CDC42BPA-208ENST00000442054 SPON1Q9HCB6 807 aa9.45□□□□□ -0.9
CDC42BPA-208ENST00000442054 FAM177BA6PVY3 158 aa9.45□□□□□ -0.9
CDC42BPA-208ENST00000442054 ZBTB7AO95365 584 aa9.45□□□□□ -0.9
CDC42BPA-208ENST00000442054 C8orf34Q49A92 452 aa9.45□□□□□ -0.9
CDC42BPA-208ENST00000442054 BICDL1Q6ZP65 573 aa9.45□□□□□ -0.9
CDC42BPA-208ENST00000442054 CANXP27824 592 aaKnown RBP9.45□□□□□ -0.9
CDC42BPA-208ENST00000442054 CRB1P82279 1406 aa9.45□□□□□ -0.9
CDC42BPA-208ENST00000442054 ATP7BP35670 1465 aa9.44□□□□□ -0.9
CDC42BPA-208ENST00000442054 KCNQ4P56696 695 aa9.44□□□□□ -0.9
CDC42BPA-208ENST00000442054 CDC42BPGQ6DT37 1551 aa9.44□□□□□ -0.9
CDC42BPA-208ENST00000442054 SSH2Q76I76 1423 aa9.44□□□□□ -0.9
CDC42BPA-208ENST00000442054 STARD3NLO95772 234 aa9.44□□□□□ -0.9
CDC42BPA-208ENST00000442054 TXNRD1Q16881 649 aa9.44□□□□□ -0.9
CDC42BPA-208ENST00000442054 USP19O94966 1318 aa9.43□□□□□ -0.9
CDC42BPA-208ENST00000442054 KCNQ2O43526 872 aa9.43□□□□□ -0.9
CDC42BPA-208ENST00000442054 CD163L1Q9NR16 1453 aa9.43□□□□□ -0.9
CDC42BPA-208ENST00000442054 RTCBQ9Y3I0 505 aaKnown RBP9.43□□□□□ -0.9
CDC42BPA-208ENST00000442054 CHD2O14647 1828 aaKnown RBP9.43□□□□□ -0.9
CDC42BPA-208ENST00000442054 MED1Q15648 1581 aaPredicted RBP9.43□□□□□ -0.9
CDC42BPA-208ENST00000442054 GNPATO15228 680 aa9.43□□□□□ -0.9
CDC42BPA-208ENST00000442054 DEKP35659 375 aaKnown RBP9.43□□□□□ -0.9
CDC42BPA-208ENST00000442054 CALD1Q05682 793 aaKnown RBP9.43□□□□□ -0.9
CDC42BPA-208ENST00000442054 AEBP1Q8IUX7 1158 aa9.43□□□□□ -0.9
CDC42BPA-208ENST00000442054 RIPK4P57078 832 aa9.42□□□□□ -0.9
CDC42BPA-208ENST00000442054 NECTIN2Q92692 538 aa9.42□□□□□ -0.9
CDC42BPA-208ENST00000442054 GNAT3A8MTJ3 354 aa9.42□□□□□ -0.9
CDC42BPA-208ENST00000442054 MARCH10Q8NA82 808 aaPredicted RBP9.42□□□□□ -0.9
CDC42BPA-208ENST00000442054 MSL1Q68DK7 614 aa9.42□□□□□ -0.9
CDC42BPA-208ENST00000442054 NWD1Q149M9 1564 aa9.41□□□□□ -0.9
CDC42BPA-208ENST00000442054 BTBD11A6QL63 1104 aa9.41□□□□□ -0.9
CDC42BPA-208ENST00000442054 NFATC2IPQ8NCF5 419 aa9.41□□□□□ -0.9
CDC42BPA-208ENST00000442054 DCAF5Q96JK2 942 aa9.41□□□□□ -0.9
CDC42BPA-208ENST00000442054 TSPYL4Q9UJ04 414 aa9.41□□□□□ -0.9
CDC42BPA-208ENST00000442054 NSD2O96028 1365 aa9.41□□□□□ -0.9
CDC42BPA-208ENST00000442054 ELL2O00472 640 aaPredicted RBP9.41□□□□□ -0.9
CDC42BPA-208ENST00000442054 CHMP4AQ9BY43 222 aa9.41□□□□□ -0.9
CDC42BPA-208ENST00000442054 KIF20BQ96Q89 1820 aa9.4□□□□□ -0.9
CDC42BPA-208ENST00000442054 TRAPPC3LQ5T215 181 aa9.4□□□□□ -0.9
CDC42BPA-208ENST00000442054 OVOS2A0A0G2JMS6 1433 aa9.4□□□□□ -0.9
CDC42BPA-208ENST00000442054 OVOS2A0A0J9YW53 1432 aa9.4□□□□□ -0.9
CDC42BPA-208ENST00000442054 CPSF1Q10570 1443 aaKnown RBP9.4□□□□□ -0.9
CDC42BPA-208ENST00000442054 OVOS2Q6IE36 1432 aa9.4□□□□□ -0.9
CDC42BPA-208ENST00000442054 SLC39A6Q13433 755 aa9.4□□□□□ -0.91
CDC42BPA-208ENST00000442054 G3V3G9 751 aa9.39□□□□□ -0.91
CDC42BPA-208ENST00000442054 DCAF8Q5TAQ9 597 aa9.39□□□□□ -0.91
CDC42BPA-208ENST00000442054 FLAD1Q8NFF5 587 aa9.39□□□□□ -0.91
CDC42BPA-208ENST00000442054 STK31Q9BXU1 1019 aa9.39□□□□□ -0.91
CDC42BPA-208ENST00000442054 CPDO75976 1380 aa9.39□□□□□ -0.91
CDC42BPA-208ENST00000442054 AIMP1Q12904 312 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 168.5 ms