RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 RIMBP3Q9UFD9 1639 aa24.86■■□□□ 1.57
SHOX2-203ENST00000441443 CHMP4BQ9H444 224 aaKnown RBP24.86■■□□□ 1.57
SHOX2-203ENST00000441443 TTC22Q5TAA0 569 aa24.86■■□□□ 1.57
SHOX2-203ENST00000441443 SASS6Q6UVJ0 657 aa24.86■■□□□ 1.57
SHOX2-203ENST00000441443 CWC22Q9HCG8 908 aaKnown RBP24.86■■□□□ 1.57
SHOX2-203ENST00000441443 COL3A1P02461 1466 aaPredicted RBP24.86■■□□□ 1.57
SHOX2-203ENST00000441443 RIMS2Q9UQ26 1411 aa24.85■■□□□ 1.57
SHOX2-203ENST00000441443 MPNDQ8N594 471 aa24.85■■□□□ 1.57
SHOX2-203ENST00000441443 APBB1O00213 710 aa24.85■■□□□ 1.57
SHOX2-203ENST00000441443 PRKAR2BP31323 418 aa24.85■■□□□ 1.57
SHOX2-203ENST00000441443 JARID2Q92833 1246 aaPredicted RBP24.85■■□□□ 1.57
SHOX2-203ENST00000441443 ALKQ9UM73 1620 aa24.85■■□□□ 1.57
SHOX2-203ENST00000441443 ST18O60284 1047 aa24.83■■□□□ 1.57
SHOX2-203ENST00000441443 PTMAP06454 111 aaKnown RBP24.83■■□□□ 1.57
SHOX2-203ENST00000441443 NME9Q86XW9 330 aa24.83■■□□□ 1.57
SHOX2-203ENST00000441443 BRPF1P55201 1214 aaPredicted RBP24.83■■□□□ 1.57
SHOX2-203ENST00000441443 EMILIN1Q9Y6C2 1016 aa24.83■■□□□ 1.57
SHOX2-203ENST00000441443 MCM5P33992 734 aa24.83■■□□□ 1.56
SHOX2-203ENST00000441443 INTS3Q68E01 1043 aaKnown RBP24.82■■□□□ 1.56
SHOX2-203ENST00000441443 DIP2BQ9P265 1576 aa24.82■■□□□ 1.56
SHOX2-203ENST00000441443 ARHGAP45Q92619 1136 aa24.81■■□□□ 1.56
SHOX2-203ENST00000441443 ABCC4O15439 1325 aa24.8■■□□□ 1.56
SHOX2-203ENST00000441443 SOX12O15370 315 aa24.8■■□□□ 1.56
SHOX2-203ENST00000441443 TSC1Q92574 1164 aa24.8■■□□□ 1.56
SHOX2-203ENST00000441443 PHACTR3Q96KR7 559 aa24.8■■□□□ 1.56
SHOX2-203ENST00000441443 CD163L1Q9NR16 1453 aa24.8■■□□□ 1.56
SHOX2-203ENST00000441443 SDSP20132 328 aa24.8■■□□□ 1.56
SHOX2-203ENST00000441443 MTERF4Q7Z6M4 381 aaKnown RBP24.8■■□□□ 1.56
SHOX2-203ENST00000441443 SMAP1Q8IYB5 467 aaPredicted RBP24.8■■□□□ 1.56
SHOX2-203ENST00000441443 ZNF428Q96B54 188 aa24.8■■□□□ 1.56
SHOX2-203ENST00000441443 CLTCQ00610 1675 aaKnown RBP24.79■■□□□ 1.56
SHOX2-203ENST00000441443 A2ML1A8K2U0 1454 aa24.79■■□□□ 1.56
SHOX2-203ENST00000441443 DNTTIP2Q5QJE6 756 aaKnown RBP24.79■■□□□ 1.56
SHOX2-203ENST00000441443 POLKQ9UBT6 870 aa24.79■■□□□ 1.56
SHOX2-203ENST00000441443 ZHX1Q9UKY1 873 aaPredicted RBP24.79■■□□□ 1.56
SHOX2-203ENST00000441443 METP08581 1390 aa24.79■■□□□ 1.56
SHOX2-203ENST00000441443 PIK3R4Q99570 1358 aa24.79■■□□□ 1.56
SHOX2-203ENST00000441443 PTCH1Q13635 1447 aa24.79■■□□□ 1.56
SHOX2-203ENST00000441443 RRS1Q15050 365 aaKnown RBP24.79■■□□□ 1.56
SHOX2-203ENST00000441443 SMARCA5O60264 1052 aaPredicted RBP24.78■■□□□ 1.56
SHOX2-203ENST00000441443 DCTPP1Q9H773 170 aa24.78■■□□□ 1.56
SHOX2-203ENST00000441443 FOXD4L6Q3SYB3 417 aaPredicted RBP24.78■■□□□ 1.56
SHOX2-203ENST00000441443 FOXD4L3Q6VB84 417 aaPredicted RBP24.78■■□□□ 1.56
SHOX2-203ENST00000441443 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP24.78■■□□□ 1.56
SHOX2-203ENST00000441443 FCHSD2O94868 740 aa24.77■■□□□ 1.56
SHOX2-203ENST00000441443 WASLO00401 505 aaPredicted RBP24.76■■□□□ 1.55
SHOX2-203ENST00000441443 CEBPAP49715 358 aaPredicted RBP24.76■■□□□ 1.55
SHOX2-203ENST00000441443 MBIPQ9NS73 344 aa24.76■■□□□ 1.55
SHOX2-203ENST00000441443 PODXL2Q9NZ53 605 aa24.76■■□□□ 1.55
SHOX2-203ENST00000441443 TWISTNBQ3B726 338 aaPredicted RBP24.76■■□□□ 1.55
SHOX2-203ENST00000441443 NUDT16Q96DE0 195 aaKnown RBP24.75■■□□□ 1.55
SHOX2-203ENST00000441443 ZNF830Q96NB3 372 aaPredicted RBP24.75■■□□□ 1.55
SHOX2-203ENST00000441443 KIAA2012Q0VF49 1180 aa24.75■■□□□ 1.55
SHOX2-203ENST00000441443 C8orf58Q8NAV2 365 aa24.75■■□□□ 1.55
SHOX2-203ENST00000441443 ARHGEF40Q8TER5 1519 aa24.74■■□□□ 1.55
SHOX2-203ENST00000441443 CASC1Q6TDU7 716 aa24.74■■□□□ 1.55
SHOX2-203ENST00000441443 CFAP44Q96MT7 982 aa24.73■■□□□ 1.55
SHOX2-203ENST00000441443 NOL8Q76FK4 1167 aaKnown RBP24.73■■□□□ 1.55
SHOX2-203ENST00000441443 TSPY26PQ9H489 355 aa24.73■■□□□ 1.55
SHOX2-203ENST00000441443 PPP6R1Q9UPN7 881 aa24.72■■□□□ 1.55
SHOX2-203ENST00000441443 MBD3O95983 291 aa24.72■■□□□ 1.55
SHOX2-203ENST00000441443 NEK4P51957 841 aa24.72■■□□□ 1.55
SHOX2-203ENST00000441443 CCDC94Q9BW85 323 aaPredicted RBP24.72■■□□□ 1.55
SHOX2-203ENST00000441443 LRRC7Q96NW7 1537 aa24.72■■□□□ 1.55
SHOX2-203ENST00000441443 NFE2L2Q16236 605 aa24.72■■□□□ 1.55
SHOX2-203ENST00000441443 SLC26A8Q96RN1 970 aa24.72■■□□□ 1.55
SHOX2-203ENST00000441443 FAM177BA6PVY3 158 aa24.71■■□□□ 1.55
SHOX2-203ENST00000441443 GNAI1P63096 354 aa24.71■■□□□ 1.55
SHOX2-203ENST00000441443 TMX3Q96JJ7 454 aa24.71■■□□□ 1.55
SHOX2-203ENST00000441443 API5Q9BZZ5 524 aaKnown RBP24.71■■□□□ 1.55
SHOX2-203ENST00000441443 GDPD2Q9HCC8 539 aa24.71■■□□□ 1.55
SHOX2-203ENST00000441443 C17orf53Q8N3J3 647 aaPredicted RBP24.7■■□□□ 1.54
SHOX2-203ENST00000441443 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.7■■□□□ 1.54
SHOX2-203ENST00000441443 REC8O95072 547 aa24.7■■□□□ 1.54
SHOX2-203ENST00000441443 TPRNQ4KMQ1 711 aa24.7■■□□□ 1.54
SHOX2-203ENST00000441443 MYRIPQ8NFW9 859 aa24.7■■□□□ 1.54
SHOX2-203ENST00000441443 REREQ9P2R6 1566 aa24.69■■□□□ 1.54
SHOX2-203ENST00000441443 COG3Q96JB2 828 aa24.69■■□□□ 1.54
SHOX2-203ENST00000441443 PNPLA6Q8IY17 1366 aa24.68■■□□□ 1.54
SHOX2-203ENST00000441443 IFT57Q9NWB7 429 aa24.68■■□□□ 1.54
SHOX2-203ENST00000441443 CCDC61Q9Y6R9 512 aa24.68■■□□□ 1.54
SHOX2-203ENST00000441443 KNDC1Q76NI1 1749 aa24.68■■□□□ 1.54
SHOX2-203ENST00000441443 FAM135BQ49AJ0 1406 aa24.67■■□□□ 1.54
SHOX2-203ENST00000441443 ERC2O15083 957 aa24.67■■□□□ 1.54
SHOX2-203ENST00000441443 GADD45BO75293 160 aaPredicted RBP24.66■■□□□ 1.54
SHOX2-203ENST00000441443 ZNF710Q8N1W2 664 aa24.66■■□□□ 1.54
SHOX2-203ENST00000441443 ANKRD44Q8N8A2 993 aa24.66■■□□□ 1.54
SHOX2-203ENST00000441443 FAM83GA6ND36 823 aa24.66■■□□□ 1.54
SHOX2-203ENST00000441443 BRD1O95696 1058 aa24.66■■□□□ 1.54
SHOX2-203ENST00000441443 TTC12Q9H892 705 aaPredicted RBP24.65■■□□□ 1.54
SHOX2-203ENST00000441443 HDGFP51858 240 aaKnown RBP24.65■■□□□ 1.54
SHOX2-203ENST00000441443 CBX1P83916 185 aa24.65■■□□□ 1.54
SHOX2-203ENST00000441443 USP25Q9UHP3 1055 aa24.65■■□□□ 1.54
SHOX2-203ENST00000441443 DCTN1Q14203 1278 aa24.64■■□□□ 1.54
SHOX2-203ENST00000441443 ZNF853P0CG23 659 aa24.64■■□□□ 1.54
SHOX2-203ENST00000441443 A0A0U1RQG5 324 aaPredicted RBP24.64■■□□□ 1.53
SHOX2-203ENST00000441443 ZSCAN20P17040 1043 aaPredicted RBP24.64■■□□□ 1.53
SHOX2-203ENST00000441443 CEP85Q6P2H3 762 aa24.64■■□□□ 1.53
SHOX2-203ENST00000441443 NOLC1Q14978 699 aaKnown RBP eCLIP24.63■■□□□ 1.53
SHOX2-203ENST00000441443 TNRQ92752 1358 aa24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms