RNA–Protein interactions for RNA: ENST00000440421.2

LTBR-202, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 729 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-202ENST00000440421 TATP17735 454 aaPredicted RBP18.77■□□□□ 0.6
LTBR-202ENST00000440421 R3HDM1Q15032 1099 aaKnown RBP18.77■□□□□ 0.6
LTBR-202ENST00000440421 NUP188Q5SRE5 1749 aa18.77■□□□□ 0.59
LTBR-202ENST00000440421 SHANK3Q9BYB0 1731 aa18.77■□□□□ 0.59
LTBR-202ENST00000440421 PLSCR1O15162 318 aa18.75■□□□□ 0.59
LTBR-202ENST00000440421 PER1O15534 1290 aaPredicted RBP18.75■□□□□ 0.59
LTBR-202ENST00000440421 EIF4A2Q14240 407 aaKnown RBP18.75■□□□□ 0.59
LTBR-202ENST00000440421 EYA1Q99502 592 aa18.75■□□□□ 0.59
LTBR-202ENST00000440421 RGPD3A6NKT7 1758 aaPredicted RBP18.74■□□□□ 0.59
LTBR-202ENST00000440421 RGPD4Q7Z3J3 1758 aa18.74■□□□□ 0.59
LTBR-202ENST00000440421 CNGB1Q14028 1251 aaPredicted RBP18.74■□□□□ 0.59
LTBR-202ENST00000440421 CC2D1BQ5T0F9 858 aaKnown RBP18.74■□□□□ 0.59
LTBR-202ENST00000440421 KAT6BQ8WYB5 2073 aa18.73■□□□□ 0.59
LTBR-202ENST00000440421 NBPF14Q5TI25 921 aa18.72■□□□□ 0.59
LTBR-202ENST00000440421 SYTL4Q96C24 671 aaPredicted RBP18.72■□□□□ 0.59
LTBR-202ENST00000440421 DOT1LQ8TEK3 1739 aa18.71■□□□□ 0.59
LTBR-202ENST00000440421 PROM2Q8N271 834 aa18.71■□□□□ 0.59
LTBR-202ENST00000440421 BTAF1O14981 1849 aa18.71■□□□□ 0.59
LTBR-202ENST00000440421 NCAPD2Q15021 1401 aa18.71■□□□□ 0.59
LTBR-202ENST00000440421 PRIM1P49642 420 aaKnown RBP18.7■□□□□ 0.58
LTBR-202ENST00000440421 TXNRD1Q16881 649 aa18.7■□□□□ 0.58
LTBR-202ENST00000440421 PCDH11XQ9BZA7 1347 aa18.7■□□□□ 0.58
LTBR-202ENST00000440421 PCDH11YQ9BZA8 1340 aa18.7■□□□□ 0.58
LTBR-202ENST00000440421 PKD1L3Q7Z443 1732 aa18.68■□□□□ 0.58
LTBR-202ENST00000440421 CYP27B1O15528 508 aa18.67■□□□□ 0.58
LTBR-202ENST00000440421 SPG7Q9UQ90 795 aa18.67■□□□□ 0.58
LTBR-202ENST00000440421 IGSF1Q8N6C5 1336 aa18.67■□□□□ 0.58
LTBR-202ENST00000440421 MTHFSP49914 203 aa18.66■□□□□ 0.58
LTBR-202ENST00000440421 ANO8Q9HCE9 1232 aaPredicted RBP18.66■□□□□ 0.58
LTBR-202ENST00000440421 NPC1L1Q9UHC9 1359 aa18.64■□□□□ 0.57
LTBR-202ENST00000440421 AEBP1Q8IUX7 1158 aa18.63■□□□□ 0.57
LTBR-202ENST00000440421 IL13P35225 146 aa18.62■□□□□ 0.57
LTBR-202ENST00000440421 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP18.62■□□□□ 0.57
LTBR-202ENST00000440421 TOGARAM1Q9Y4F4 1720 aa18.61■□□□□ 0.57
LTBR-202ENST00000440421 LRP5O75197 1615 aa18.61■□□□□ 0.57
LTBR-202ENST00000440421 STK32BQ9NY57 414 aa18.61■□□□□ 0.57
LTBR-202ENST00000440421 KCNQ4P56696 695 aa18.6■□□□□ 0.57
LTBR-202ENST00000440421 SULT6B1Q6IMI4 303 aa18.6■□□□□ 0.57
LTBR-202ENST00000440421 MPRIPQ6WCQ1 1025 aa18.6■□□□□ 0.57
LTBR-202ENST00000440421 LRRC4BQ9NT99 713 aa18.6■□□□□ 0.57
LTBR-202ENST00000440421 PHKG2P15735 406 aa18.59■□□□□ 0.57
LTBR-202ENST00000440421 NKX1-1Q15270 411 aaPredicted RBP18.59■□□□□ 0.57
LTBR-202ENST00000440421 IFNL2Q8IZJ0 200 aa18.59■□□□□ 0.57
LTBR-202ENST00000440421 SLC15A2Q16348 729 aa18.58■□□□□ 0.56
LTBR-202ENST00000440421 PLEKHO1Q53GL0 409 aaPredicted RBP18.58■□□□□ 0.56
LTBR-202ENST00000440421 ITGB4P16144 1822 aa18.58■□□□□ 0.56
LTBR-202ENST00000440421 PAPPAQ13219 1627 aa18.57■□□□□ 0.56
LTBR-202ENST00000440421 DIAPH1O60610 1272 aaKnown RBP18.57■□□□□ 0.56
LTBR-202ENST00000440421 SLC27A3Q5K4L6 730 aa18.57■□□□□ 0.56
LTBR-202ENST00000440421 PDGFDQ9GZP0 370 aaPredicted RBP18.57■□□□□ 0.56
LTBR-202ENST00000440421 LY75O60449 1722 aa18.57■□□□□ 0.56
LTBR-202ENST00000440421 HMOX1P09601 288 aa18.56■□□□□ 0.56
LTBR-202ENST00000440421 ZNF530Q6P9A1 599 aaPredicted RBP18.56■□□□□ 0.56
LTBR-202ENST00000440421 PLEKHG2Q9H7P9 1386 aa18.55■□□□□ 0.56
LTBR-202ENST00000440421 ZNF827Q17R98 1081 aa18.55■□□□□ 0.56
LTBR-202ENST00000440421 CCNL1Q9UK58 526 aaPredicted RBP18.55■□□□□ 0.56
LTBR-202ENST00000440421 CASZ1Q86V15 1759 aa18.55■□□□□ 0.56
LTBR-202ENST00000440421 KDRP35968 1356 aa18.55■□□□□ 0.56
LTBR-202ENST00000440421 AMOTQ4VCS5 1084 aa18.54■□□□□ 0.56
LTBR-202ENST00000440421 PIGBQ92521 554 aa18.54■□□□□ 0.56
LTBR-202ENST00000440421 PALLDQ8WX93 1383 aa18.54■□□□□ 0.56
LTBR-202ENST00000440421 SRCAPQ6ZRS2 3230 aa18.53■□□□□ 0.56
LTBR-202ENST00000440421 COL3A1P02461 1466 aaPredicted RBP18.53■□□□□ 0.56
LTBR-202ENST00000440421 TMOD3Q9NYL9 352 aa18.53■□□□□ 0.56
LTBR-202ENST00000440421 U2SURPO15042 1029 aaKnown RBP18.52■□□□□ 0.56
LTBR-202ENST00000440421 ZBTB7AO95365 584 aa18.52■□□□□ 0.56
LTBR-202ENST00000440421 C1orf141Q5JVX7 400 aa18.52■□□□□ 0.56
LTBR-202ENST00000440421 SPON1Q9HCB6 807 aa18.52■□□□□ 0.56
LTBR-202ENST00000440421 HSP90AB1P08238 724 aaKnown RBP18.51■□□□□ 0.55
LTBR-202ENST00000440421 PPP2R1AP30153 589 aa18.51■□□□□ 0.55
LTBR-202ENST00000440421 AKT1S1Q96B36 256 aa18.51■□□□□ 0.55
LTBR-202ENST00000440421 SMARCC1Q92922 1105 aaPredicted RBP18.5■□□□□ 0.55
LTBR-202ENST00000440421 DCAF5Q96JK2 942 aa18.5■□□□□ 0.55
LTBR-202ENST00000440421 KDM6AO15550 1401 aaPredicted RBP18.49■□□□□ 0.55
LTBR-202ENST00000440421 CFAP53Q96M91 514 aa18.49■□□□□ 0.55
LTBR-202ENST00000440421 ASAP1Q9ULH1 1129 aa18.49■□□□□ 0.55
LTBR-202ENST00000440421 ATF5Q9Y2D1 282 aaPredicted RBP18.49■□□□□ 0.55
LTBR-202ENST00000440421 TFCP2L1Q9NZI6 479 aa18.48■□□□□ 0.55
LTBR-202ENST00000440421 PPP1R1BQ9UD71 204 aaPredicted RBP18.48■□□□□ 0.55
LTBR-202ENST00000440421 ERVV-2B6SEH9 535 aa18.47■□□□□ 0.55
LTBR-202ENST00000440421 CABP4P57796 275 aa18.47■□□□□ 0.55
LTBR-202ENST00000440421 DDX10Q13206 875 aaKnown RBP18.47■□□□□ 0.55
LTBR-202ENST00000440421 C5P01031 1676 aa18.47■□□□□ 0.55
LTBR-202ENST00000440421 ATG3Q9NT62 314 aa18.46■□□□□ 0.55
LTBR-202ENST00000440421 TUBGCP6Q96RT7 1819 aa18.46■□□□□ 0.55
LTBR-202ENST00000440421 PNPLA7Q6ZV29 1317 aa18.46■□□□□ 0.55
LTBR-202ENST00000440421 MTHFSDQ2M296 383 aaKnown RBP18.45■□□□□ 0.54
LTBR-202ENST00000440421 AKAP4Q5JQC9 854 aa18.45■□□□□ 0.54
LTBR-202ENST00000440421 TAF1LQ8IZX4 1826 aa18.44■□□□□ 0.54
LTBR-202ENST00000440421 LOC102724428A0A0B4J2F2 783 aa18.44■□□□□ 0.54
LTBR-202ENST00000440421 SIK1P57059 783 aa18.44■□□□□ 0.54
LTBR-202ENST00000440421 MTFR1LQ9H019 292 aa18.44■□□□□ 0.54
LTBR-202ENST00000440421 QSER1Q2KHR3 1735 aa18.43■□□□□ 0.54
LTBR-202ENST00000440421 ZEB1P37275 1124 aaPredicted RBP18.43■□□□□ 0.54
LTBR-202ENST00000440421 NFATC2IPQ8NCF5 419 aa18.43■□□□□ 0.54
LTBR-202ENST00000440421 NUDCQ9Y266 331 aa18.43■□□□□ 0.54
LTBR-202ENST00000440421 MSH5O43196 834 aa18.42■□□□□ 0.54
LTBR-202ENST00000440421 PTGER2P43116 358 aa18.42■□□□□ 0.54
LTBR-202ENST00000440421 LGR6Q9HBX8 967 aa18.42■□□□□ 0.54
LTBR-202ENST00000440421 SCN11AQ9UI33 1791 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms