RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 EYA1Q99502 592 aa14.2□□□□□ -0.14
MCF2L-216ENST00000439475 SPG7Q9UQ90 795 aa14.2□□□□□ -0.14
MCF2L-216ENST00000439475 KCNQ2O43526 872 aa14.18□□□□□ -0.14
MCF2L-216ENST00000439475 ZEB1P37275 1124 aaPredicted RBP14.18□□□□□ -0.14
MCF2L-216ENST00000439475 NPC1L1Q9UHC9 1359 aa14.18□□□□□ -0.14
MCF2L-216ENST00000439475 PCDH11XQ9BZA7 1347 aa14.17□□□□□ -0.14
MCF2L-216ENST00000439475 PCDH11YQ9BZA8 1340 aa14.17□□□□□ -0.14
MCF2L-216ENST00000439475 MEGF6O75095 1541 aa14.17□□□□□ -0.14
MCF2L-216ENST00000439475 CNGB1Q14028 1251 aaPredicted RBP14.17□□□□□ -0.14
MCF2L-216ENST00000439475 SYTL4Q96C24 671 aaPredicted RBP14.17□□□□□ -0.14
MCF2L-216ENST00000439475 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.17□□□□□ -0.14
MCF2L-216ENST00000439475 MTHFSP49914 203 aa14.16□□□□□ -0.14
MCF2L-216ENST00000439475 PTF1AQ7RTS3 328 aa14.16□□□□□ -0.14
MCF2L-216ENST00000439475 PSDA5PKW4 1024 aaPredicted RBP14.15□□□□□ -0.14
MCF2L-216ENST00000439475 HMGB2P26583 209 aaKnown RBP14.15□□□□□ -0.14
MCF2L-216ENST00000439475 PRIM1P49642 420 aaKnown RBP14.15□□□□□ -0.14
MCF2L-216ENST00000439475 R3HDM1Q15032 1099 aaKnown RBP14.15□□□□□ -0.14
MCF2L-216ENST00000439475 TXNRD1Q16881 649 aa14.15□□□□□ -0.14
MCF2L-216ENST00000439475 PLEKHO1Q53GL0 409 aaPredicted RBP14.14□□□□□ -0.15
MCF2L-216ENST00000439475 IFNL2Q8IZJ0 200 aa14.14□□□□□ -0.15
MCF2L-216ENST00000439475 IGSF1Q8N6C5 1336 aa14.14□□□□□ -0.15
MCF2L-216ENST00000439475 EP400Q96L91 3159 aa14.13□□□□□ -0.15
MCF2L-216ENST00000439475 AMOTQ4VCS5 1084 aa14.13□□□□□ -0.15
MCF2L-216ENST00000439475 NCAPD2Q15021 1401 aa14.13□□□□□ -0.15
MCF2L-216ENST00000439475 NHSQ6T4R5 1651 aa14.13□□□□□ -0.15
MCF2L-216ENST00000439475 PLEKHG2Q9H7P9 1386 aa14.12□□□□□ -0.15
MCF2L-216ENST00000439475 RGPD3A6NKT7 1758 aaPredicted RBP14.12□□□□□ -0.15
MCF2L-216ENST00000439475 RGPD4Q7Z3J3 1758 aa14.12□□□□□ -0.15
MCF2L-216ENST00000439475 DIAPH1O60610 1272 aaKnown RBP14.12□□□□□ -0.15
MCF2L-216ENST00000439475 IL13P35225 146 aa14.12□□□□□ -0.15
MCF2L-216ENST00000439475 PROM2Q8N271 834 aa14.12□□□□□ -0.15
MCF2L-216ENST00000439475 STK32BQ9NY57 414 aa14.12□□□□□ -0.15
MCF2L-216ENST00000439475 CYP27B1O15528 508 aa14.11□□□□□ -0.15
MCF2L-216ENST00000439475 HSP90AB1P08238 724 aaKnown RBP14.11□□□□□ -0.15
MCF2L-216ENST00000439475 NKX1-1Q15270 411 aaPredicted RBP14.11□□□□□ -0.15
MCF2L-216ENST00000439475 SLC27A3Q5K4L6 730 aa14.11□□□□□ -0.15
MCF2L-216ENST00000439475 SULT6B1Q6IMI4 303 aa14.11□□□□□ -0.15
MCF2L-216ENST00000439475 CFAP53Q96M91 514 aa14.11□□□□□ -0.15
MCF2L-216ENST00000439475 RREB1Q92766 1687 aa14.1□□□□□ -0.15
MCF2L-216ENST00000439475 MPRIPQ6WCQ1 1025 aa14.1□□□□□ -0.15
MCF2L-216ENST00000439475 BTAF1O14981 1849 aa14.09□□□□□ -0.15
MCF2L-216ENST00000439475 PHKG2P15735 406 aa14.09□□□□□ -0.15
MCF2L-216ENST00000439475 SMARCC1Q92922 1105 aaPredicted RBP14.09□□□□□ -0.15
MCF2L-216ENST00000439475 NUP188Q5SRE5 1749 aa14.08□□□□□ -0.16
MCF2L-216ENST00000439475 SHANK3Q9BYB0 1731 aa14.08□□□□□ -0.16
MCF2L-216ENST00000439475 SLC15A2Q16348 729 aa14.08□□□□□ -0.16
MCF2L-216ENST00000439475 C1orf141Q5JVX7 400 aa14.08□□□□□ -0.16
MCF2L-216ENST00000439475 NUDCQ9Y266 331 aa14.08□□□□□ -0.16
MCF2L-216ENST00000439475 PKD1L3Q7Z443 1732 aa14.07□□□□□ -0.16
MCF2L-216ENST00000439475 DOT1LQ8TEK3 1739 aa14.07□□□□□ -0.16
MCF2L-216ENST00000439475 U2SURPO15042 1029 aaKnown RBP14.06□□□□□ -0.16
MCF2L-216ENST00000439475 ZNF530Q6P9A1 599 aaPredicted RBP14.06□□□□□ -0.16
MCF2L-216ENST00000439475 AEBP1Q8IUX7 1158 aa14.06□□□□□ -0.16
MCF2L-216ENST00000439475 TMOD3Q9NYL9 352 aa14.06□□□□□ -0.16
MCF2L-216ENST00000439475 CCNL1Q9UK58 526 aaPredicted RBP14.06□□□□□ -0.16
MCF2L-216ENST00000439475 HMOX1P09601 288 aa14.05□□□□□ -0.16
MCF2L-216ENST00000439475 PPP2R1AP30153 589 aa14.05□□□□□ -0.16
MCF2L-216ENST00000439475 DCAF5Q96JK2 942 aa14.05□□□□□ -0.16
MCF2L-216ENST00000439475 KDRP35968 1356 aa14.05□□□□□ -0.16
MCF2L-216ENST00000439475 ERVV-2B6SEH9 535 aa14.04□□□□□ -0.16
MCF2L-216ENST00000439475 SPON1Q9HCB6 807 aa14.04□□□□□ -0.16
MCF2L-216ENST00000439475 ANO8Q9HCE9 1232 aaPredicted RBP14.04□□□□□ -0.16
MCF2L-216ENST00000439475 DDX10Q13206 875 aaKnown RBP14.03□□□□□ -0.16
MCF2L-216ENST00000439475 AKAP4Q5JQC9 854 aa14.03□□□□□ -0.16
MCF2L-216ENST00000439475 PIGBQ92521 554 aa14.03□□□□□ -0.16
MCF2L-216ENST00000439475 LRRC4BQ9NT99 713 aa14.03□□□□□ -0.16
MCF2L-216ENST00000439475 CABP4P57796 275 aa14.02□□□□□ -0.17
MCF2L-216ENST00000439475 ITGB4P16144 1822 aa14.01□□□□□ -0.17
MCF2L-216ENST00000439475 PALLDQ8WX93 1383 aa14.01□□□□□ -0.17
MCF2L-216ENST00000439475 TFCP2L1Q9NZI6 479 aa14.01□□□□□ -0.17
MCF2L-216ENST00000439475 NEFMP07197 916 aa14□□□□□ -0.17
MCF2L-216ENST00000439475 RALBP1Q15311 655 aa14□□□□□ -0.17
MCF2L-216ENST00000439475 AKT1S1Q96B36 256 aa14□□□□□ -0.17
MCF2L-216ENST00000439475 PPP1R1BQ9UD71 204 aaPredicted RBP14□□□□□ -0.17
MCF2L-216ENST00000439475 LY75O60449 1722 aa13.99□□□□□ -0.17
MCF2L-216ENST00000439475 U2AF1L5P0DN76 240 aaPredicted RBP13.99□□□□□ -0.17
MCF2L-216ENST00000439475 KCNQ4P56696 695 aa13.99□□□□□ -0.17
MCF2L-216ENST00000439475 U2AF1Q01081 240 aaKnown RBP eCLIP13.99□□□□□ -0.17
MCF2L-216ENST00000439475 GAS2L2Q8NHY3 880 aa13.99□□□□□ -0.17
MCF2L-216ENST00000439475 SLC16A10Q8TF71 515 aa13.99□□□□□ -0.17
MCF2L-216ENST00000439475 LRP5O75197 1615 aa13.98□□□□□ -0.17
MCF2L-216ENST00000439475 LOC102724428A0A0B4J2F2 783 aa13.98□□□□□ -0.17
MCF2L-216ENST00000439475 SIK1P57059 783 aa13.98□□□□□ -0.17
MCF2L-216ENST00000439475 MTHFSDQ2M296 383 aaKnown RBP13.98□□□□□ -0.17
MCF2L-216ENST00000439475 FLAD1Q8NFF5 587 aa13.98□□□□□ -0.17
MCF2L-216ENST00000439475 MTFR1LQ9H019 292 aa13.98□□□□□ -0.17
MCF2L-216ENST00000439475 ATG3Q9NT62 314 aa13.98□□□□□ -0.17
MCF2L-216ENST00000439475 ZBTB7AO95365 584 aa13.97□□□□□ -0.17
MCF2L-216ENST00000439475 ATP6V1AP38606 617 aa13.97□□□□□ -0.17
MCF2L-216ENST00000439475 ZNF827Q17R98 1081 aa13.97□□□□□ -0.17
MCF2L-216ENST00000439475 NFATC2IPQ8NCF5 419 aa13.97□□□□□ -0.17
MCF2L-216ENST00000439475 PNNQ9H307 717 aaKnown RBP13.97□□□□□ -0.17
MCF2L-216ENST00000439475 ASAP1Q9ULH1 1129 aa13.97□□□□□ -0.17
MCF2L-216ENST00000439475 TOGARAM1Q9Y4F4 1720 aa13.96□□□□□ -0.17
MCF2L-216ENST00000439475 COL3A1P02461 1466 aaPredicted RBP13.96□□□□□ -0.17
MCF2L-216ENST00000439475 MSH5O43196 834 aa13.96□□□□□ -0.17
MCF2L-216ENST00000439475 FCHSD2O94868 740 aa13.96□□□□□ -0.17
MCF2L-216ENST00000439475 AK7Q96M32 723 aa13.96□□□□□ -0.17
MCF2L-216ENST00000439475 RBM42Q9BTD8 480 aaKnown RBP13.96□□□□□ -0.17
MCF2L-216ENST00000439475 ATF5Q9Y2D1 282 aaPredicted RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms