RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 FAM43AQ8N2R8 423 aa20.52■□□□□ 0.88
CLCNKA-203ENST00000439316 C19orf44Q9H6X5 657 aa20.52■□□□□ 0.88
CLCNKA-203ENST00000439316 MBIPQ9NS73 344 aa20.52■□□□□ 0.88
CLCNKA-203ENST00000439316 OVOS2A0A0J9YW53 1432 aa20.52■□□□□ 0.87
CLCNKA-203ENST00000439316 OVOS2Q6IE36 1432 aa20.52■□□□□ 0.87
CLCNKA-203ENST00000439316 DDIT3P35638 169 aa20.52■□□□□ 0.87
CLCNKA-203ENST00000439316 LMOD3Q0VAK6 560 aa20.5■□□□□ 0.87
CLCNKA-203ENST00000439316 ANO8Q9HCE9 1232 aaPredicted RBP20.5■□□□□ 0.87
CLCNKA-203ENST00000439316 RRS1Q15050 365 aaKnown RBP20.5■□□□□ 0.87
CLCNKA-203ENST00000439316 ANKRD45Q5TZF3 282 aa20.49■□□□□ 0.87
CLCNKA-203ENST00000439316 CFAP44Q96MT7 982 aa20.49■□□□□ 0.87
CLCNKA-203ENST00000439316 ORAI2Q96SN7 254 aa20.49■□□□□ 0.87
CLCNKA-203ENST00000439316 PIK3C2AO00443 1686 aa20.49■□□□□ 0.87
CLCNKA-203ENST00000439316 FSD2A1L4K1 749 aa20.48■□□□□ 0.87
CLCNKA-203ENST00000439316 TWISTNBQ3B726 338 aaPredicted RBP20.48■□□□□ 0.87
CLCNKA-203ENST00000439316 SIRT2Q8IXJ6 389 aa20.48■□□□□ 0.87
CLCNKA-203ENST00000439316 C1orf115Q9H7X2 142 aa20.48■□□□□ 0.87
CLCNKA-203ENST00000439316 KIF24Q5T7B8 1368 aa20.48■□□□□ 0.87
CLCNKA-203ENST00000439316 API5Q9BZZ5 524 aaKnown RBP20.46■□□□□ 0.87
CLCNKA-203ENST00000439316 DDX11L8A8MPP1 907 aa20.45■□□□□ 0.86
CLCNKA-203ENST00000439316 SOX12O15370 315 aa20.45■□□□□ 0.86
CLCNKA-203ENST00000439316 ATF3P18847 181 aa20.45■□□□□ 0.86
CLCNKA-203ENST00000439316 PSME1Q06323 249 aa20.45■□□□□ 0.86
CLCNKA-203ENST00000439316 C8orf58Q8NAV2 365 aa20.45■□□□□ 0.86
CLCNKA-203ENST00000439316 KIF2CQ99661 725 aa20.45■□□□□ 0.86
CLCNKA-203ENST00000439316 USP31Q70CQ4 1352 aa20.45■□□□□ 0.86
CLCNKA-203ENST00000439316 TRAK2O60296 914 aa20.45■□□□□ 0.86
CLCNKA-203ENST00000439316 NLRP6P59044 892 aa20.45■□□□□ 0.86
CLCNKA-203ENST00000439316 CIZ1Q9ULV3 898 aaPredicted RBP20.45■□□□□ 0.86
CLCNKA-203ENST00000439316 XIRP1Q702N8 1843 aaKnown RBP20.44■□□□□ 0.86
CLCNKA-203ENST00000439316 ZNF335Q9H4Z2 1342 aaPredicted RBP20.44■□□□□ 0.86
CLCNKA-203ENST00000439316 C1orf167Q5SNV9 1468 aa20.44■□□□□ 0.86
CLCNKA-203ENST00000439316 GOLGA6L3A6NEY3 463 aa20.44■□□□□ 0.86
CLCNKA-203ENST00000439316 ELL2O00472 640 aaPredicted RBP20.44■□□□□ 0.86
CLCNKA-203ENST00000439316 NUTM2GQ5VZR2 741 aa20.44■□□□□ 0.86
CLCNKA-203ENST00000439316 ABTB2Q8N961 1025 aa20.44■□□□□ 0.86
CLCNKA-203ENST00000439316 FOXO3O43524 673 aa20.43■□□□□ 0.86
CLCNKA-203ENST00000439316 TBC1D9Q6ZT07 1266 aa20.43■□□□□ 0.86
CLCNKA-203ENST00000439316 DCCP43146 1447 aa20.42■□□□□ 0.86
CLCNKA-203ENST00000439316 MST1RQ04912 1400 aa20.41■□□□□ 0.86
CLCNKA-203ENST00000439316 MARF1Q9Y4F3 1742 aaKnown RBP20.41■□□□□ 0.86
CLCNKA-203ENST00000439316 FAM83GA6ND36 823 aa20.41■□□□□ 0.86
CLCNKA-203ENST00000439316 XRCC6P12956 609 aaKnown RBP eCLIP20.41■□□□□ 0.86
CLCNKA-203ENST00000439316 HSP90AB1P08238 724 aaKnown RBP20.4■□□□□ 0.86
CLCNKA-203ENST00000439316 XPCQ01831 940 aaPredicted RBP20.4■□□□□ 0.86
CLCNKA-203ENST00000439316 MSH6P52701 1360 aa20.4■□□□□ 0.86
CLCNKA-203ENST00000439316 CADPS2Q86UW7 1296 aa20.39■□□□□ 0.86
CLCNKA-203ENST00000439316 GZF1Q9H116 711 aaPredicted RBP20.39■□□□□ 0.85
CLCNKA-203ENST00000439316 PEAK1Q9H792 1746 aa20.38■□□□□ 0.85
CLCNKA-203ENST00000439316 RGS12O14924 1447 aa20.38■□□□□ 0.85
CLCNKA-203ENST00000439316 USP54Q70EL1 1684 aa20.38■□□□□ 0.85
CLCNKA-203ENST00000439316 CDC45O75419 566 aa20.38■□□□□ 0.85
CLCNKA-203ENST00000439316 KIF1AQ12756 1690 aa20.38■□□□□ 0.85
CLCNKA-203ENST00000439316 RAB3GAP1Q15042 981 aa20.37■□□□□ 0.85
CLCNKA-203ENST00000439316 INTS3Q68E01 1043 aaKnown RBP20.37■□□□□ 0.85
CLCNKA-203ENST00000439316 TNPO1Q92973 898 aaKnown RBP20.37■□□□□ 0.85
CLCNKA-203ENST00000439316 ATP10DQ9P241 1426 aa20.37■□□□□ 0.85
CLCNKA-203ENST00000439316 MAP3K19Q56UN5 1328 aa20.37■□□□□ 0.85
CLCNKA-203ENST00000439316 DCTN1Q14203 1278 aa20.37■□□□□ 0.85
CLCNKA-203ENST00000439316 DCTPP1Q9H773 170 aa20.37■□□□□ 0.85
CLCNKA-203ENST00000439316 RGPD1P0DJD0 1748 aa20.36■□□□□ 0.85
CLCNKA-203ENST00000439316 K7ELQ4 463 aaPredicted RBP20.35■□□□□ 0.85
CLCNKA-203ENST00000439316 CD2BP2O95400 341 aaKnown RBP20.35■□□□□ 0.85
CLCNKA-203ENST00000439316 GSPT1P15170 499 aaKnown RBP20.35■□□□□ 0.85
CLCNKA-203ENST00000439316 PLEKHM2Q8IWE5 1019 aa20.35■□□□□ 0.85
CLCNKA-203ENST00000439316 EIF4A2Q14240 407 aaKnown RBP20.35■□□□□ 0.85
CLCNKA-203ENST00000439316 HSP90AB2PQ58FF8 381 aa20.35■□□□□ 0.85
CLCNKA-203ENST00000439316 KIAA0232Q92628 1395 aa20.35■□□□□ 0.85
CLCNKA-203ENST00000439316 EIF5BO60841 1220 aaKnown RBP20.34■□□□□ 0.85
CLCNKA-203ENST00000439316 HAP1P54257 671 aaPredicted RBP20.34■□□□□ 0.85
CLCNKA-203ENST00000439316 KRT28Q7Z3Y7 464 aa20.34■□□□□ 0.85
CLCNKA-203ENST00000439316 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.34■□□□□ 0.85
CLCNKA-203ENST00000439316 ISY1Q9ULR0 285 aaKnown RBP20.34■□□□□ 0.85
CLCNKA-203ENST00000439316 AEBP1Q8IUX7 1158 aa20.34■□□□□ 0.85
CLCNKA-203ENST00000439316 GBP4Q96PP9 640 aa20.34■□□□□ 0.85
CLCNKA-203ENST00000439316 RRAGDQ9NQL2 400 aaPredicted RBP20.34■□□□□ 0.85
CLCNKA-203ENST00000439316 MRE11P49959 708 aa20.33■□□□□ 0.84
CLCNKA-203ENST00000439316 ANKRD44Q8N8A2 993 aa20.33■□□□□ 0.84
CLCNKA-203ENST00000439316 TRPM3Q9HCF6 1732 aaPredicted RBP20.33■□□□□ 0.84
CLCNKA-203ENST00000439316 CHL1O00533 1208 aa20.32■□□□□ 0.84
CLCNKA-203ENST00000439316 TTC22Q5TAA0 569 aa20.32■□□□□ 0.84
CLCNKA-203ENST00000439316 PANK2Q9BZ23 570 aa20.32■□□□□ 0.84
CLCNKA-203ENST00000439316 SBNO1A3KN83 1393 aa20.32■□□□□ 0.84
CLCNKA-203ENST00000439316 DDX17Q92841 729 aaKnown RBP20.32■□□□□ 0.84
CLCNKA-203ENST00000439316 ARXQ96QS3 562 aa20.32■□□□□ 0.84
CLCNKA-203ENST00000439316 FLT4P35916 1363 aa20.31■□□□□ 0.84
CLCNKA-203ENST00000439316 PTMSP20962 102 aa20.31■□□□□ 0.84
CLCNKA-203ENST00000439316 AMPHP49418 695 aa20.31■□□□□ 0.84
CLCNKA-203ENST00000439316 SULT6B1Q6IMI4 303 aa20.31■□□□□ 0.84
CLCNKA-203ENST00000439316 LMOD2Q6P5Q4 547 aa20.31■□□□□ 0.84
CLCNKA-203ENST00000439316 RBM42Q9BTD8 480 aaKnown RBP20.31■□□□□ 0.84
CLCNKA-203ENST00000439316 RPAP2Q8IXW5 612 aaPredicted RBP20.3■□□□□ 0.84
CLCNKA-203ENST00000439316 PTPRCP08575 1304 aa20.29■□□□□ 0.84
CLCNKA-203ENST00000439316 CEP85Q6P2H3 762 aa20.29■□□□□ 0.84
CLCNKA-203ENST00000439316 RTL1A6NKG5 1358 aa20.29■□□□□ 0.84
CLCNKA-203ENST00000439316 HSP90AA1P07900 732 aaKnown RBP20.28■□□□□ 0.84
CLCNKA-203ENST00000439316 KRT24Q2M2I5 525 aa20.28■□□□□ 0.84
CLCNKA-203ENST00000439316 GAS2L2Q8NHY3 880 aa20.28■□□□□ 0.84
CLCNKA-203ENST00000439316 LTN1O94822 1766 aa20.28■□□□□ 0.84
CLCNKA-203ENST00000439316 CRB1P82279 1406 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms