RNA–Protein interactions for RNA: ENST00000438462.1

RTN4-211, Transcript of reticulon 4, humanhuman

TSL 5

Gene RTN4, Length 656 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-211ENST00000438462 CFAP44Q96MT7 982 aa17.01■□□□□ 0.31
RTN4-211ENST00000438462 BCS1LQ9Y276 419 aa17.01■□□□□ 0.31
RTN4-211ENST00000438462 C5P01031 1676 aa17.01■□□□□ 0.31
RTN4-211ENST00000438462 CCDC7Q96M83 1385 aa17■□□□□ 0.31
RTN4-211ENST00000438462 SPATA31E1Q6ZUB1 1445 aa16.99■□□□□ 0.31
RTN4-211ENST00000438462 KIF13BQ9NQT8 1826 aa16.99■□□□□ 0.31
RTN4-211ENST00000438462 CSB-PGBD3P0DP91 1061 aa16.99■□□□□ 0.31
RTN4-211ENST00000438462 C14orf93Q9H972 538 aaKnown RBP16.99■□□□□ 0.31
RTN4-211ENST00000438462 ACEP12821 1306 aa16.98■□□□□ 0.31
RTN4-211ENST00000438462 VIRMAQ69YN4 1812 aaKnown RBP16.98■□□□□ 0.31
RTN4-211ENST00000438462 HSPA8P11142 646 aaKnown RBP16.98■□□□□ 0.31
RTN4-211ENST00000438462 DOT1LQ8TEK3 1739 aa16.98■□□□□ 0.31
RTN4-211ENST00000438462 CPSF1Q10570 1443 aaKnown RBP16.97■□□□□ 0.31
RTN4-211ENST00000438462 CFAP70Q5T0N1 1121 aa16.97■□□□□ 0.31
RTN4-211ENST00000438462 CREBZFQ9NS37 354 aa16.97■□□□□ 0.31
RTN4-211ENST00000438462 CCNL1Q9UK58 526 aaPredicted RBP16.97■□□□□ 0.31
RTN4-211ENST00000438462 CNTNAP1P78357 1384 aa16.97■□□□□ 0.31
RTN4-211ENST00000438462 BRCA1P38398 1863 aaKnown RBP16.97■□□□□ 0.31
RTN4-211ENST00000438462 NUDT16Q96DE0 195 aaKnown RBP16.96■□□□□ 0.31
RTN4-211ENST00000438462 ARFGEF1Q9Y6D6 1849 aa16.95■□□□□ 0.3
RTN4-211ENST00000438462 TOGARAM1Q9Y4F4 1720 aa16.95■□□□□ 0.3
RTN4-211ENST00000438462 APLP2Q06481 763 aa16.94■□□□□ 0.3
RTN4-211ENST00000438462 WBP1LQ9NX94 342 aa16.94■□□□□ 0.3
RTN4-211ENST00000438462 RNF181Q9P0P0 153 aa16.94■□□□□ 0.3
RTN4-211ENST00000438462 PRPF38BQ5VTL8 546 aaKnown RBP16.93■□□□□ 0.3
RTN4-211ENST00000438462 ADGRB1O14514 1584 aa16.92■□□□□ 0.3
RTN4-211ENST00000438462 NSD2O96028 1365 aa16.91■□□□□ 0.3
RTN4-211ENST00000438462 TRAK1Q9UPV9 953 aa16.91■□□□□ 0.3
RTN4-211ENST00000438462 TAF1LQ8IZX4 1826 aa16.91■□□□□ 0.3
RTN4-211ENST00000438462 SBF1O95248 1867 aa16.9■□□□□ 0.3
RTN4-211ENST00000438462 SYTL4Q96C24 671 aaPredicted RBP16.9■□□□□ 0.3
RTN4-211ENST00000438462 FCHSD2O94868 740 aa16.89■□□□□ 0.29
RTN4-211ENST00000438462 ITGAEP38570 1179 aa16.89■□□□□ 0.29
RTN4-211ENST00000438462 FLAD1Q8NFF5 587 aa16.89■□□□□ 0.29
RTN4-211ENST00000438462 ERBB3P21860 1342 aa16.89■□□□□ 0.29
RTN4-211ENST00000438462 VEGFAP15692 232 aaPredicted RBP16.88■□□□□ 0.29
RTN4-211ENST00000438462 VEGFBP49765 207 aa16.88■□□□□ 0.29
RTN4-211ENST00000438462 SMIM5Q71RC9 77 aa16.88■□□□□ 0.29
RTN4-211ENST00000438462 A0A0G2JLW4 131 aa16.87■□□□□ 0.29
RTN4-211ENST00000438462 UBR3Q6ZT12 1888 aa16.86■□□□□ 0.29
RTN4-211ENST00000438462 IL2RBP14784 551 aa16.86■□□□□ 0.29
RTN4-211ENST00000438462 C4BP0C0L5 1744 aa16.86■□□□□ 0.29
RTN4-211ENST00000438462 ANKRD36BQ8N2N9 1353 aa16.86■□□□□ 0.29
RTN4-211ENST00000438462 NLRP6P59044 892 aa16.85■□□□□ 0.29
RTN4-211ENST00000438462 TIAM2Q8IVF5 1701 aa16.84■□□□□ 0.29
RTN4-211ENST00000438462 PRIM1P49642 420 aaKnown RBP16.84■□□□□ 0.29
RTN4-211ENST00000438462 AMIGO3Q86WK7 504 aa16.84■□□□□ 0.29
RTN4-211ENST00000438462 PLEKHG3A1L390 1219 aa16.83■□□□□ 0.28
RTN4-211ENST00000438462 TGFB2P61812 414 aa16.83■□□□□ 0.28
RTN4-211ENST00000438462 ARHGEF25Q86VW2 580 aa16.83■□□□□ 0.28
RTN4-211ENST00000438462 PHF14O94880 888 aa16.82■□□□□ 0.28
RTN4-211ENST00000438462 USP47Q96K76 1375 aa16.81■□□□□ 0.28
RTN4-211ENST00000438462 DPEP1P16444 411 aa16.81■□□□□ 0.28
RTN4-211ENST00000438462 CCDC61Q9Y6R9 512 aa16.81■□□□□ 0.28
RTN4-211ENST00000438462 DDX54Q8TDD1 881 aaKnown RBP16.8■□□□□ 0.28
RTN4-211ENST00000438462 ZC3H4Q9UPT8 1303 aaKnown RBP16.79■□□□□ 0.28
RTN4-211ENST00000438462 SLC4A1APQ9BWU0 796 aaKnown RBP16.79■□□□□ 0.28
RTN4-211ENST00000438462 MCOLN1Q9GZU1 580 aa16.79■□□□□ 0.28
RTN4-211ENST00000438462 GLTPD2A6NH11 291 aa16.78■□□□□ 0.28
RTN4-211ENST00000438462 SOX12O15370 315 aa16.78■□□□□ 0.28
RTN4-211ENST00000438462 CDK19Q9BWU1 502 aa16.78■□□□□ 0.28
RTN4-211ENST00000438462 NFAT5O94916 1531 aa16.77■□□□□ 0.28
RTN4-211ENST00000438462 DCAF5Q96JK2 942 aa16.77■□□□□ 0.28
RTN4-211ENST00000438462 AK7Q96M32 723 aa16.77■□□□□ 0.28
RTN4-211ENST00000438462 NLRP2Q9NX02 1062 aa16.77■□□□□ 0.28
RTN4-211ENST00000438462 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.76■□□□□ 0.27
RTN4-211ENST00000438462 MMP10P09238 476 aa16.76■□□□□ 0.27
RTN4-211ENST00000438462 MAP2K1Q02750 393 aaPredicted RBP16.76■□□□□ 0.27
RTN4-211ENST00000438462 THSD7BQ9C0I4 1608 aa16.76■□□□□ 0.27
RTN4-211ENST00000438462 NSD3Q9BZ95 1437 aa16.76■□□□□ 0.27
RTN4-211ENST00000438462 POTECB2RU33 542 aa16.75■□□□□ 0.27
RTN4-211ENST00000438462 CHADLQ6NUI6 762 aa16.75■□□□□ 0.27
RTN4-211ENST00000438462 KDM6AO15550 1401 aaPredicted RBP16.75■□□□□ 0.27
RTN4-211ENST00000438462 LTBP1Q14766 1721 aa16.73■□□□□ 0.27
RTN4-211ENST00000438462 DLL1O00548 723 aa16.73■□□□□ 0.27
RTN4-211ENST00000438462 SOX10P56693 466 aa16.73■□□□□ 0.27
RTN4-211ENST00000438462 RASSF7Q02833 373 aa16.73■□□□□ 0.27
RTN4-211ENST00000438462 C4AP0C0L4 1744 aa16.73■□□□□ 0.27
RTN4-211ENST00000438462 PASKQ96RG2 1323 aa16.71■□□□□ 0.27
RTN4-211ENST00000438462 POTEIP0CG38 1075 aa16.71■□□□□ 0.27
RTN4-211ENST00000438462 POTEJP0CG39 1038 aa16.71■□□□□ 0.27
RTN4-211ENST00000438462 KCNA3P22001 575 aa16.71■□□□□ 0.27
RTN4-211ENST00000438462 KCNH5Q8NCM2 988 aa16.71■□□□□ 0.27
RTN4-211ENST00000438462 TMEM88BA6NKF7 163 aa16.7■□□□□ 0.26
RTN4-211ENST00000438462 GCC1Q96CN9 775 aa16.7■□□□□ 0.26
RTN4-211ENST00000438462 PALLDQ8WX93 1383 aa16.69■□□□□ 0.26
RTN4-211ENST00000438462 SSFA2P28290 1259 aa16.69■□□□□ 0.26
RTN4-211ENST00000438462 DALRD3Q5D0E6 543 aaKnown RBP16.69■□□□□ 0.26
RTN4-211ENST00000438462 PIM2Q9P1W9 311 aa16.69■□□□□ 0.26
RTN4-211ENST00000438462 TSKSQ9UJT2 592 aa16.69■□□□□ 0.26
RTN4-211ENST00000438462 CCDC88AQ3V6T2 1871 aa16.69■□□□□ 0.26
RTN4-211ENST00000438462 WDR33Q9C0J8 1336 aaKnown RBP16.69■□□□□ 0.26
RTN4-211ENST00000438462 LTN1O94822 1766 aa16.68■□□□□ 0.26
RTN4-211ENST00000438462 HABP4Q5JVS0 413 aaKnown RBP16.67■□□□□ 0.26
RTN4-211ENST00000438462 CCDC87Q9NVE4 849 aa16.67■□□□□ 0.26
RTN4-211ENST00000438462 RASSF10A6NK89 507 aa16.66■□□□□ 0.26
RTN4-211ENST00000438462 HMGB2P26583 209 aaKnown RBP16.66■□□□□ 0.26
RTN4-211ENST00000438462 DGKZQ13574 1117 aa16.66■□□□□ 0.26
RTN4-211ENST00000438462 BEGAINQ9BUH8 593 aa16.66■□□□□ 0.26
RTN4-211ENST00000438462 ZNF219Q9P2Y4 722 aaPredicted RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms