RNA–Protein interactions for RNA: ENST00000438213.5

CTSD-205, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-205ENST00000438213 SPG7Q9UQ90 795 aa22.07■■□□□ 1.12
CTSD-205ENST00000438213 MEGF6O75095 1541 aa22.06■■□□□ 1.12
CTSD-205ENST00000438213 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.06■■□□□ 1.12
CTSD-205ENST00000438213 NCAPD2Q15021 1401 aa22.06■■□□□ 1.12
CTSD-205ENST00000438213 ZNF316A6NFI3 1004 aaPredicted RBP22.05■■□□□ 1.12
CTSD-205ENST00000438213 PPP2R1AP30153 589 aa22.05■■□□□ 1.12
CTSD-205ENST00000438213 EN1Q05925 392 aaPredicted RBP22.05■■□□□ 1.12
CTSD-205ENST00000438213 PCDH11XQ9BZA7 1347 aa22.04■■□□□ 1.12
CTSD-205ENST00000438213 PCDH11YQ9BZA8 1340 aa22.04■■□□□ 1.12
CTSD-205ENST00000438213 SULT6B1Q6IMI4 303 aa22.03■■□□□ 1.12
CTSD-205ENST00000438213 RGPD1P0DJD0 1748 aa22.03■■□□□ 1.12
CTSD-205ENST00000438213 ACSBG1Q96GR2 724 aa22.02■■□□□ 1.12
CTSD-205ENST00000438213 RALBP1Q15311 655 aa22.01■■□□□ 1.11
CTSD-205ENST00000438213 PLEKHO1Q53GL0 409 aaPredicted RBP22.01■■□□□ 1.11
CTSD-205ENST00000438213 PLEKHG2Q9H7P9 1386 aa22■■□□□ 1.11
CTSD-205ENST00000438213 KAT6BQ8WYB5 2073 aa22■■□□□ 1.11
CTSD-205ENST00000438213 PLSCR1O15162 318 aa22■■□□□ 1.11
CTSD-205ENST00000438213 KCNQ2O43526 872 aa22■■□□□ 1.11
CTSD-205ENST00000438213 AMOTQ4VCS5 1084 aa22■■□□□ 1.11
CTSD-205ENST00000438213 CAMKK2Q96RR4 588 aa22■■□□□ 1.11
CTSD-205ENST00000438213 NUDCQ9Y266 331 aa22■■□□□ 1.11
CTSD-205ENST00000438213 U2SURPO15042 1029 aaKnown RBP21.98■■□□□ 1.11
CTSD-205ENST00000438213 CYP27B1O15528 508 aa21.98■■□□□ 1.11
CTSD-205ENST00000438213 EZH2Q15910 746 aaKnown RBP21.98■■□□□ 1.11
CTSD-205ENST00000438213 AEBP1Q8IUX7 1158 aa21.98■■□□□ 1.11
CTSD-205ENST00000438213 IFNL2Q8IZJ0 200 aa21.98■■□□□ 1.11
CTSD-205ENST00000438213 PARD3Q8TEW0 1356 aa21.98■■□□□ 1.11
CTSD-205ENST00000438213 PRIM1P49642 420 aaKnown RBP21.97■■□□□ 1.11
CTSD-205ENST00000438213 PTF1AQ7RTS3 328 aa21.97■■□□□ 1.11
CTSD-205ENST00000438213 SYTL4Q96C24 671 aaPredicted RBP21.97■■□□□ 1.11
CTSD-205ENST00000438213 SBF2Q86WG5 1849 aa21.96■■□□□ 1.11
CTSD-205ENST00000438213 KDRP35968 1356 aa21.96■■□□□ 1.11
CTSD-205ENST00000438213 HMOX1P09601 288 aa21.95■■□□□ 1.1
CTSD-205ENST00000438213 NKX1-1Q15270 411 aaPredicted RBP21.95■■□□□ 1.1
CTSD-205ENST00000438213 TNS1Q9HBL0 1735 aaKnown RBP21.94■■□□□ 1.1
CTSD-205ENST00000438213 HSP90AB1P08238 724 aaKnown RBP21.93■■□□□ 1.1
CTSD-205ENST00000438213 PHKG2P15735 406 aa21.93■■□□□ 1.1
CTSD-205ENST00000438213 C1orf141Q5JVX7 400 aa21.92■■□□□ 1.1
CTSD-205ENST00000438213 ZNF530Q6P9A1 599 aaPredicted RBP21.92■■□□□ 1.1
CTSD-205ENST00000438213 COL3A1P02461 1466 aaPredicted RBP21.9■■□□□ 1.1
CTSD-205ENST00000438213 NBPF14Q5TI25 921 aa21.9■■□□□ 1.1
CTSD-205ENST00000438213 PKD1L3Q7Z443 1732 aa21.89■■□□□ 1.1
CTSD-205ENST00000438213 U2AF1L5P0DN76 240 aaPredicted RBP21.89■■□□□ 1.09
CTSD-205ENST00000438213 U2AF1Q01081 240 aaKnown RBP eCLIP21.89■■□□□ 1.09
CTSD-205ENST00000438213 SHANK3Q9BYB0 1731 aa21.89■■□□□ 1.09
CTSD-205ENST00000438213 MYBBP1AQ9BQG0 1328 aaKnown RBP21.88■■□□□ 1.09
CTSD-205ENST00000438213 TXNRD1Q16881 649 aa21.88■■□□□ 1.09
CTSD-205ENST00000438213 MPRIPQ6WCQ1 1025 aa21.88■■□□□ 1.09
CTSD-205ENST00000438213 DCAF5Q96JK2 942 aa21.88■■□□□ 1.09
CTSD-205ENST00000438213 NHSQ6T4R5 1651 aa21.88■■□□□ 1.09
CTSD-205ENST00000438213 ERVV-2B6SEH9 535 aa21.86■■□□□ 1.09
CTSD-205ENST00000438213 FCHSD2O94868 740 aa21.86■■□□□ 1.09
CTSD-205ENST00000438213 PROM2Q8N271 834 aa21.86■■□□□ 1.09
CTSD-205ENST00000438213 PRKRIP1Q9H875 184 aaPredicted RBP21.86■■□□□ 1.09
CTSD-205ENST00000438213 AKAP4Q5JQC9 854 aa21.85■■□□□ 1.09
CTSD-205ENST00000438213 TMOD3Q9NYL9 352 aa21.84■■□□□ 1.09
CTSD-205ENST00000438213 MTHFSDQ2M296 383 aaKnown RBP21.83■■□□□ 1.09
CTSD-205ENST00000438213 PIGBQ92521 554 aa21.83■■□□□ 1.09
CTSD-205ENST00000438213 SMARCC1Q92922 1105 aaPredicted RBP21.83■■□□□ 1.09
CTSD-205ENST00000438213 HMGB2P26583 209 aaKnown RBP21.82■■□□□ 1.08
CTSD-205ENST00000438213 PRKAR2BP31323 418 aa21.82■■□□□ 1.08
CTSD-205ENST00000438213 SLC27A3Q5K4L6 730 aa21.82■■□□□ 1.08
CTSD-205ENST00000438213 GAS2L2Q8NHY3 880 aa21.82■■□□□ 1.08
CTSD-205ENST00000438213 RSPH6AQ9H0K4 717 aa21.82■■□□□ 1.08
CTSD-205ENST00000438213 PNNQ9H307 717 aaKnown RBP21.82■■□□□ 1.08
CTSD-205ENST00000438213 NEFMP07197 916 aa21.81■■□□□ 1.08
CTSD-205ENST00000438213 CABP4P57796 275 aa21.81■■□□□ 1.08
CTSD-205ENST00000438213 DOT1LQ8TEK3 1739 aa21.8■■□□□ 1.08
CTSD-205ENST00000438213 BTAF1O14981 1849 aa21.8■■□□□ 1.08
CTSD-205ENST00000438213 RGPD3A6NKT7 1758 aaPredicted RBP21.79■■□□□ 1.08
CTSD-205ENST00000438213 RGPD4Q7Z3J3 1758 aa21.79■■□□□ 1.08
CTSD-205ENST00000438213 R3HDM1Q15032 1099 aaKnown RBP21.79■■□□□ 1.08
CTSD-205ENST00000438213 PSDA5PKW4 1024 aaPredicted RBP21.78■■□□□ 1.08
CTSD-205ENST00000438213 STK32BQ9NY57 414 aa21.78■■□□□ 1.08
CTSD-205ENST00000438213 PHACTR3Q96KR7 559 aa21.77■■□□□ 1.08
CTSD-205ENST00000438213 CCNL1Q9UK58 526 aaPredicted RBP21.77■■□□□ 1.08
CTSD-205ENST00000438213 GNAT3A8MTJ3 354 aa21.76■■□□□ 1.07
CTSD-205ENST00000438213 RNMTO43148 476 aaKnown RBP21.76■■□□□ 1.07
CTSD-205ENST00000438213 ANP32CO43423 234 aa21.76■■□□□ 1.07
CTSD-205ENST00000438213 LRRC4BQ9NT99 713 aa21.76■■□□□ 1.07
CTSD-205ENST00000438213 RREB1Q92766 1687 aa21.75■■□□□ 1.07
CTSD-205ENST00000438213 NFATC2IPQ8NCF5 419 aa21.75■■□□□ 1.07
CTSD-205ENST00000438213 LGR6Q9HBX8 967 aa21.75■■□□□ 1.07
CTSD-205ENST00000438213 PALLDQ8WX93 1383 aa21.74■■□□□ 1.07
CTSD-205ENST00000438213 KDM6AO15550 1401 aaPredicted RBP21.74■■□□□ 1.07
CTSD-205ENST00000438213 ASAP1Q9ULH1 1129 aa21.74■■□□□ 1.07
CTSD-205ENST00000438213 SLC15A2Q16348 729 aa21.73■■□□□ 1.07
CTSD-205ENST00000438213 ITGB4P16144 1822 aa21.73■■□□□ 1.07
CTSD-205ENST00000438213 NUP188Q5SRE5 1749 aa21.72■■□□□ 1.07
CTSD-205ENST00000438213 WDR43Q15061 677 aaKnown RBP eCLIP21.72■■□□□ 1.07
CTSD-205ENST00000438213 SLC52A2Q9HAB3 445 aa21.72■■□□□ 1.07
CTSD-205ENST00000438213 ATG3Q9NT62 314 aa21.72■■□□□ 1.07
CTSD-205ENST00000438213 MAP3K5Q99683 1374 aa21.72■■□□□ 1.07
CTSD-205ENST00000438213 TOGARAM1Q9Y4F4 1720 aa21.72■■□□□ 1.07
CTSD-205ENST00000438213 KCNQ4P56696 695 aa21.71■■□□□ 1.07
CTSD-205ENST00000438213 RTF1Q92541 710 aaKnown RBP21.71■■□□□ 1.07
CTSD-205ENST00000438213 ANO8Q9HCE9 1232 aaPredicted RBP21.71■■□□□ 1.07
CTSD-205ENST00000438213 LOC102724428A0A0B4J2F2 783 aa21.7■■□□□ 1.06
CTSD-205ENST00000438213 SIK1P57059 783 aa21.7■■□□□ 1.06
CTSD-205ENST00000438213 HTATSF1O43719 755 aaKnown RBP21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms