RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 TNPO1Q92973 898 aaKnown RBP14.67□□□□□ -0.06
CD44-209ENST00000433892 ANO8Q9HCE9 1232 aaPredicted RBP14.67□□□□□ -0.06
CD44-209ENST00000433892 APBB1O00213 710 aa14.67□□□□□ -0.06
CD44-209ENST00000433892 FOXO3O43524 673 aa14.67□□□□□ -0.06
CD44-209ENST00000433892 CEP85Q6P2H3 762 aa14.67□□□□□ -0.06
CD44-209ENST00000433892 UBR1Q8IWV7 1749 aa14.66□□□□□ -0.06
CD44-209ENST00000433892 ATP10DQ9P241 1426 aa14.66□□□□□ -0.06
CD44-209ENST00000433892 DDX11L8A8MPP1 907 aa14.66□□□□□ -0.06
CD44-209ENST00000433892 SLC4A2P04920 1241 aa14.66□□□□□ -0.06
CD44-209ENST00000433892 XRCC6P12956 609 aaKnown RBP eCLIP14.66□□□□□ -0.06
CD44-209ENST00000433892 OTUD7AQ8TE49 926 aaPredicted RBP14.66□□□□□ -0.06
CD44-209ENST00000433892 MEIS3Q99687 375 aa14.66□□□□□ -0.06
CD44-209ENST00000433892 MSH6P52701 1360 aa14.66□□□□□ -0.06
CD44-209ENST00000433892 KIAA0232Q92628 1395 aa14.66□□□□□ -0.06
CD44-209ENST00000433892 PEAK1Q9H792 1746 aa14.66□□□□□ -0.06
CD44-209ENST00000433892 FSD2A1L4K1 749 aa14.66□□□□□ -0.06
CD44-209ENST00000433892 K7ELQ4 463 aaPredicted RBP14.66□□□□□ -0.06
CD44-209ENST00000433892 TTC22Q5TAA0 569 aa14.66□□□□□ -0.06
CD44-209ENST00000433892 RPAP2Q8IXW5 612 aaPredicted RBP14.66□□□□□ -0.06
CD44-209ENST00000433892 SMARCA5O60264 1052 aaPredicted RBP14.65□□□□□ -0.06
CD44-209ENST00000433892 PTPRCP08575 1304 aa14.65□□□□□ -0.06
CD44-209ENST00000433892 MAP3K19Q56UN5 1328 aa14.65□□□□□ -0.06
CD44-209ENST00000433892 RTL1A6NKG5 1358 aa14.64□□□□□ -0.07
CD44-209ENST00000433892 FAM43AQ8N2R8 423 aa14.64□□□□□ -0.07
CD44-209ENST00000433892 CIZ1Q9ULV3 898 aaPredicted RBP14.64□□□□□ -0.07
CD44-209ENST00000433892 CRB1P82279 1406 aa14.64□□□□□ -0.07
CD44-209ENST00000433892 USP31Q70CQ4 1352 aa14.64□□□□□ -0.07
CD44-209ENST00000433892 RAB3GAP1Q15042 981 aa14.64□□□□□ -0.07
CD44-209ENST00000433892 MTHFSDQ2M296 383 aaKnown RBP14.64□□□□□ -0.07
CD44-209ENST00000433892 PLEKHG1Q9ULL1 1385 aa14.63□□□□□ -0.07
CD44-209ENST00000433892 CEBPAP49715 358 aaPredicted RBP14.63□□□□□ -0.07
CD44-209ENST00000433892 TOPAZ1Q8N9V7 1692 aa14.63□□□□□ -0.07
CD44-209ENST00000433892 RTF1Q92541 710 aaKnown RBP14.63□□□□□ -0.07
CD44-209ENST00000433892 PANK2Q9BZ23 570 aa14.63□□□□□ -0.07
CD44-209ENST00000433892 TSPYL4Q9UJ04 414 aa14.63□□□□□ -0.07
CD44-209ENST00000433892 PTPRUQ92729 1446 aa14.63□□□□□ -0.07
CD44-209ENST00000433892 SLC4A10Q6U841 1118 aa14.62□□□□□ -0.07
CD44-209ENST00000433892 G2E3Q7L622 706 aa14.62□□□□□ -0.07
CD44-209ENST00000433892 GAS2L2Q8NHY3 880 aa14.62□□□□□ -0.07
CD44-209ENST00000433892 SSH2Q76I76 1423 aa14.62□□□□□ -0.07
CD44-209ENST00000433892 F6X3S4 739 aa14.62□□□□□ -0.07
CD44-209ENST00000433892 SDSP20132 328 aa14.62□□□□□ -0.07
CD44-209ENST00000433892 GBP4Q96PP9 640 aa14.62□□□□□ -0.07
CD44-209ENST00000433892 AMOTL2Q9Y2J4 779 aa14.62□□□□□ -0.07
CD44-209ENST00000433892 RGPD1P0DJD0 1748 aa14.61□□□□□ -0.07
CD44-209ENST00000433892 PLPPR3Q6T4P5 718 aa14.61□□□□□ -0.07
CD44-209ENST00000433892 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.61□□□□□ -0.07
CD44-209ENST00000433892 ARHGEF10O15013 1369 aa14.61□□□□□ -0.07
CD44-209ENST00000433892 NALCNQ8IZF0 1738 aa14.61□□□□□ -0.07
CD44-209ENST00000433892 NGDNQ8NEJ9 315 aaKnown RBP14.61□□□□□ -0.07
CD44-209ENST00000433892 AMPHP49418 695 aa14.6□□□□□ -0.07
CD44-209ENST00000433892 EYA1Q99502 592 aa14.6□□□□□ -0.07
CD44-209ENST00000433892 USP26Q9BXU7 913 aa14.6□□□□□ -0.07
CD44-209ENST00000433892 EID1Q9Y6B2 187 aa14.6□□□□□ -0.07
CD44-209ENST00000433892 TTC21AQ8NDW8 1320 aa14.59□□□□□ -0.07
CD44-209ENST00000433892 KIF13AQ9H1H9 1805 aa14.59□□□□□ -0.07
CD44-209ENST00000433892 FLT4P35916 1363 aa14.59□□□□□ -0.07
CD44-209ENST00000433892 RIMS1Q86UR5 1692 aaKnown RBP14.59□□□□□ -0.07
CD44-209ENST00000433892 SSFA2P28290 1259 aa14.58□□□□□ -0.08
CD44-209ENST00000433892 RABEP1Q15276 862 aa14.58□□□□□ -0.08
CD44-209ENST00000433892 SBNO1A3KN83 1393 aa14.58□□□□□ -0.08
CD44-209ENST00000433892 EIF5BO60841 1220 aaKnown RBP14.58□□□□□ -0.08
CD44-209ENST00000433892 KDRP35968 1356 aa14.57□□□□□ -0.08
CD44-209ENST00000433892 HMMRO75330 724 aa14.57□□□□□ -0.08
CD44-209ENST00000433892 MRE11P49959 708 aa14.57□□□□□ -0.08
CD44-209ENST00000433892 RRAGDQ9NQL2 400 aaPredicted RBP14.57□□□□□ -0.08
CD44-209ENST00000433892 CCT4P50991 539 aaKnown RBP14.57□□□□□ -0.08
CD44-209ENST00000433892 CASC1Q6TDU7 716 aa14.57□□□□□ -0.08
CD44-209ENST00000433892 CEP170BQ9Y4F5 1589 aaPredicted RBP14.56□□□□□ -0.08
CD44-209ENST00000433892 IGSF1Q8N6C5 1336 aa14.56□□□□□ -0.08
CD44-209ENST00000433892 NUTM2GQ5VZR2 741 aa14.56□□□□□ -0.08
CD44-209ENST00000433892 NECTIN2Q92692 538 aa14.56□□□□□ -0.08
CD44-209ENST00000433892 GRPEL1Q9HAV7 217 aa14.56□□□□□ -0.08
CD44-209ENST00000433892 NLRP6P59044 892 aa14.55□□□□□ -0.08
CD44-209ENST00000433892 STK31Q9BXU1 1019 aa14.55□□□□□ -0.08
CD44-209ENST00000433892 EXOC6BQ9Y2D4 811 aa14.55□□□□□ -0.08
CD44-209ENST00000433892 FMN2Q9NZ56 1722 aa14.54□□□□□ -0.08
CD44-209ENST00000433892 GNAI2P04899 355 aa14.54□□□□□ -0.08
CD44-209ENST00000433892 SKOR2Q2VWA4 1001 aaPredicted RBP14.54□□□□□ -0.08
CD44-209ENST00000433892 TBX22Q9Y458 520 aa14.54□□□□□ -0.08
CD44-209ENST00000433892 PDE1AP54750 535 aa14.54□□□□□ -0.08
CD44-209ENST00000433892 GAS2L3Q86XJ1 694 aa14.54□□□□□ -0.08
CD44-209ENST00000433892 FLIIQ13045 1269 aa14.53□□□□□ -0.08
CD44-209ENST00000433892 FKBP5Q13451 457 aaPredicted RBP14.53□□□□□ -0.08
CD44-209ENST00000433892 TSHZ3Q63HK5 1081 aa14.53□□□□□ -0.08
CD44-209ENST00000433892 RGPD8O14715 1765 aaPredicted RBP14.53□□□□□ -0.08
CD44-209ENST00000433892 GNAT3A8MTJ3 354 aa14.53□□□□□ -0.08
CD44-209ENST00000433892 REC8O95072 547 aa14.53□□□□□ -0.08
CD44-209ENST00000433892 BAG4O95429 457 aaKnown RBP14.52□□□□□ -0.08
CD44-209ENST00000433892 PTMSP20962 102 aa14.52□□□□□ -0.08
CD44-209ENST00000433892 LTV1Q96GA3 475 aaPredicted RBP14.52□□□□□ -0.08
CD44-209ENST00000433892 DIP2AQ14689 1571 aa14.52□□□□□ -0.09
CD44-209ENST00000433892 GOLGA6L22H0YM25 854 aa14.52□□□□□ -0.09
CD44-209ENST00000433892 ERC2O15083 957 aa14.52□□□□□ -0.09
CD44-209ENST00000433892 CCDC30Q5VVM6 783 aa14.52□□□□□ -0.09
CD44-209ENST00000433892 OSBPL3Q9H4L5 887 aa14.52□□□□□ -0.09
CD44-209ENST00000433892 ISY1Q9ULR0 285 aaKnown RBP14.52□□□□□ -0.09
CD44-209ENST00000433892 AK9Q5TCS8 1911 aa14.51□□□□□ -0.09
CD44-209ENST00000433892 ST18O60284 1047 aa14.51□□□□□ -0.09
CD44-209ENST00000433892 HOXC9P31274 260 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms