RNA–Protein interactions for RNA: ENST00000430858.1

HDAC6-207, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 618 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-207ENST00000430858 SBF2Q86WG5 1849 aa13.37□□□□□ -0.27
HDAC6-207ENST00000430858 EIF4A2Q14240 407 aaKnown RBP13.37□□□□□ -0.27
HDAC6-207ENST00000430858 NBPF14Q5TI25 921 aa13.37□□□□□ -0.27
HDAC6-207ENST00000430858 RGPD2P0DJD1 1756 aa13.37□□□□□ -0.27
HDAC6-207ENST00000430858 NPC1L1Q9UHC9 1359 aa13.36□□□□□ -0.27
HDAC6-207ENST00000430858 PCDH11XQ9BZA7 1347 aa13.36□□□□□ -0.27
HDAC6-207ENST00000430858 PCDH11YQ9BZA8 1340 aa13.36□□□□□ -0.27
HDAC6-207ENST00000430858 PSDA5PKW4 1024 aaPredicted RBP13.35□□□□□ -0.27
HDAC6-207ENST00000430858 R3HDM1Q15032 1099 aaKnown RBP13.35□□□□□ -0.27
HDAC6-207ENST00000430858 CC2D1BQ5T0F9 858 aaKnown RBP13.35□□□□□ -0.27
HDAC6-207ENST00000430858 RGPD3A6NKT7 1758 aaPredicted RBP13.35□□□□□ -0.27
HDAC6-207ENST00000430858 RGPD4Q7Z3J3 1758 aa13.35□□□□□ -0.27
HDAC6-207ENST00000430858 NHSQ6T4R5 1651 aa13.34□□□□□ -0.27
HDAC6-207ENST00000430858 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.34□□□□□ -0.273e-6■■□□□ 12
HDAC6-207ENST00000430858 SPG7Q9UQ90 795 aa13.34□□□□□ -0.27
HDAC6-207ENST00000430858 IGSF1Q8N6C5 1336 aa13.34□□□□□ -0.27
HDAC6-207ENST00000430858 RREB1Q92766 1687 aa13.34□□□□□ -0.27
HDAC6-207ENST00000430858 PLEKHG2Q9H7P9 1386 aa13.33□□□□□ -0.27
HDAC6-207ENST00000430858 PRIM1P49642 420 aaKnown RBP13.33□□□□□ -0.28
HDAC6-207ENST00000430858 TXNRD1Q16881 649 aa13.33□□□□□ -0.28
HDAC6-207ENST00000430858 PROM2Q8N271 834 aa13.33□□□□□ -0.28
HDAC6-207ENST00000430858 MTHFSP49914 203 aa13.32□□□□□ -0.28
HDAC6-207ENST00000430858 SYTL4Q96C24 671 aaPredicted RBP13.32□□□□□ -0.28
HDAC6-207ENST00000430858 NUP188Q5SRE5 1749 aa13.31□□□□□ -0.28
HDAC6-207ENST00000430858 SHANK3Q9BYB0 1731 aa13.31□□□□□ -0.28
HDAC6-207ENST00000430858 CYP27B1O15528 508 aa13.31□□□□□ -0.28
HDAC6-207ENST00000430858 IL13P35225 146 aa13.3□□□□□ -0.28
HDAC6-207ENST00000430858 NKX1-1Q15270 411 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-207ENST00000430858 IFNL2Q8IZJ0 200 aa13.29□□□□□ -0.28
HDAC6-207ENST00000430858 ANO8Q9HCE9 1232 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-207ENST00000430858 PKD1L3Q7Z443 1732 aa13.28□□□□□ -0.28
HDAC6-207ENST00000430858 CNGB1Q14028 1251 aaPredicted RBP13.28□□□□□ -0.28
HDAC6-207ENST00000430858 AMOTQ4VCS5 1084 aa13.28□□□□□ -0.28
HDAC6-207ENST00000430858 SLC27A3Q5K4L6 730 aa13.28□□□□□ -0.28
HDAC6-207ENST00000430858 STK32BQ9NY57 414 aa13.28□□□□□ -0.28
HDAC6-207ENST00000430858 BTAF1O14981 1849 aa13.27□□□□□ -0.28
HDAC6-207ENST00000430858 PHKG2P15735 406 aa13.27□□□□□ -0.29
HDAC6-207ENST00000430858 PLEKHO1Q53GL0 409 aaPredicted RBP13.27□□□□□ -0.29
HDAC6-207ENST00000430858 SULT6B1Q6IMI4 303 aa13.27□□□□□ -0.29
HDAC6-207ENST00000430858 DOT1LQ8TEK3 1739 aa13.27□□□□□ -0.29
HDAC6-207ENST00000430858 DIAPH1O60610 1272 aaKnown RBP13.26□□□□□ -0.29
HDAC6-207ENST00000430858 KDRP35968 1356 aa13.26□□□□□ -0.29
HDAC6-207ENST00000430858 SLC15A2Q16348 729 aa13.26□□□□□ -0.29
HDAC6-207ENST00000430858 AEBP1Q8IUX7 1158 aa13.26□□□□□ -0.29
HDAC6-207ENST00000430858 KAT6BQ8WYB5 2073 aa13.25□□□□□ -0.29
HDAC6-207ENST00000430858 HSP90AB1P08238 724 aaKnown RBP13.25□□□□□ -0.29
HDAC6-207ENST00000430858 MPRIPQ6WCQ1 1025 aa13.25□□□□□ -0.29
HDAC6-207ENST00000430858 LRRC4BQ9NT99 713 aa13.25□□□□□ -0.29
HDAC6-207ENST00000430858 LRP5O75197 1615 aa13.24□□□□□ -0.29
HDAC6-207ENST00000430858 HMGB2P26583 209 aaKnown RBP13.24□□□□□ -0.29
HDAC6-207ENST00000430858 ZNF530Q6P9A1 599 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-207ENST00000430858 PIGBQ92521 554 aa13.23□□□□□ -0.29
HDAC6-207ENST00000430858 SMARCC1Q92922 1105 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-207ENST00000430858 DCAF5Q96JK2 942 aa13.23□□□□□ -0.29
HDAC6-207ENST00000430858 CFAP53Q96M91 514 aa13.23□□□□□ -0.29
HDAC6-207ENST00000430858 CCNL1Q9UK58 526 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-207ENST00000430858 PALLDQ8WX93 1383 aa13.22□□□□□ -0.29
HDAC6-207ENST00000430858 ZEB1P37275 1124 aaPredicted RBP13.22□□□□□ -0.29
HDAC6-207ENST00000430858 C1orf141Q5JVX7 400 aa13.22□□□□□ -0.29
HDAC6-207ENST00000430858 SPON1Q9HCB6 807 aa13.22□□□□□ -0.29
HDAC6-207ENST00000430858 TMOD3Q9NYL9 352 aa13.22□□□□□ -0.29
HDAC6-207ENST00000430858 SRCAPQ6ZRS2 3230 aa13.21□□□□□ -0.29
HDAC6-207ENST00000430858 ERVV-2B6SEH9 535 aa13.21□□□□□ -0.29
HDAC6-207ENST00000430858 HMOX1P09601 288 aa13.21□□□□□ -0.29
HDAC6-207ENST00000430858 PPP2R1AP30153 589 aa13.21□□□□□ -0.29
HDAC6-207ENST00000430858 AKT1S1Q96B36 256 aa13.21□□□□□ -0.29
HDAC6-207ENST00000430858 PAPPAQ13219 1627 aa13.21□□□□□ -0.3
HDAC6-207ENST00000430858 U2SURPO15042 1029 aaKnown RBP13.2□□□□□ -0.3
HDAC6-207ENST00000430858 KCNQ4P56696 695 aa13.2□□□□□ -0.3
HDAC6-207ENST00000430858 ZNF827Q17R98 1081 aa13.2□□□□□ -0.3
HDAC6-207ENST00000430858 COL3A1P02461 1466 aaPredicted RBP13.2□□□□□ -0.3
HDAC6-207ENST00000430858 TOGARAM1Q9Y4F4 1720 aa13.19□□□□□ -0.3
HDAC6-207ENST00000430858 AKAP4Q5JQC9 854 aa13.19□□□□□ -0.3
HDAC6-207ENST00000430858 PDGFDQ9GZP0 370 aaPredicted RBP13.19□□□□□ -0.3
HDAC6-207ENST00000430858 NUDCQ9Y266 331 aa13.19□□□□□ -0.3
HDAC6-207ENST00000430858 LY75O60449 1722 aa13.19□□□□□ -0.3
HDAC6-207ENST00000430858 TFCP2L1Q9NZI6 479 aa13.18□□□□□ -0.3
HDAC6-207ENST00000430858 KDM6AO15550 1401 aaPredicted RBP13.17□□□□□ -0.3
HDAC6-207ENST00000430858 LOC102724428A0A0B4J2F2 783 aa13.17□□□□□ -0.3
HDAC6-207ENST00000430858 ZBTB7AO95365 584 aa13.17□□□□□ -0.3
HDAC6-207ENST00000430858 SIK1P57059 783 aa13.17□□□□□ -0.3
HDAC6-207ENST00000430858 CABP4P57796 275 aa13.17□□□□□ -0.3
HDAC6-207ENST00000430858 MTFR1LQ9H019 292 aa13.17□□□□□ -0.3
HDAC6-207ENST00000430858 ATG3Q9NT62 314 aa13.17□□□□□ -0.3
HDAC6-207ENST00000430858 ASAP1Q9ULH1 1129 aa13.17□□□□□ -0.3
HDAC6-207ENST00000430858 CASZ1Q86V15 1759 aa13.17□□□□□ -0.3
HDAC6-207ENST00000430858 ITGB4P16144 1822 aa13.16□□□□□ -0.3
HDAC6-207ENST00000430858 DDX10Q13206 875 aaKnown RBP13.16□□□□□ -0.3
HDAC6-207ENST00000430858 MTHFSDQ2M296 383 aaKnown RBP13.16□□□□□ -0.3
HDAC6-207ENST00000430858 PNPLA7Q6ZV29 1317 aa13.15□□□□□ -0.3
HDAC6-207ENST00000430858 GAS2L2Q8NHY3 880 aa13.15□□□□□ -0.3
HDAC6-207ENST00000430858 SLC16A10Q8TF71 515 aa13.15□□□□□ -0.3
HDAC6-207ENST00000430858 PPP1R1BQ9UD71 204 aaPredicted RBP13.15□□□□□ -0.3
HDAC6-207ENST00000430858 U2AF1L5P0DN76 240 aaPredicted RBP13.14□□□□□ -0.31
HDAC6-207ENST00000430858 U2AF1Q01081 240 aaKnown RBP eCLIP13.14□□□□□ -0.31
HDAC6-207ENST00000430858 RALBP1Q15311 655 aa13.14□□□□□ -0.31
HDAC6-207ENST00000430858 ATF5Q9Y2D1 282 aaPredicted RBP13.14□□□□□ -0.31
HDAC6-207ENST00000430858 RNMTO43148 476 aaKnown RBP13.13□□□□□ -0.31
HDAC6-207ENST00000430858 ATP6V1AP38606 617 aa13.13□□□□□ -0.31
HDAC6-207ENST00000430858 PTGER2P43116 358 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms