RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PTGER2P43116 358 aa20.23■□□□□ 0.83
SDC1-204ENST00000429035 QSER1Q2KHR3 1735 aa20.23■□□□□ 0.83
SDC1-204ENST00000429035 NSD3Q9BZ95 1437 aa20.23■□□□□ 0.83
SDC1-204ENST00000429035 ZCRB1Q8TBF4 217 aaKnown RBP20.22■□□□□ 0.83
SDC1-204ENST00000429035 LRRC4BQ9NT99 713 aa20.22■□□□□ 0.83
SDC1-204ENST00000429035 PRIM1P49642 420 aaKnown RBP20.21■□□□□ 0.83
SDC1-204ENST00000429035 RAPGEF4Q8WZA2 1011 aa20.2■□□□□ 0.82
SDC1-204ENST00000429035 POLR3GLQ9BT43 218 aa20.2■□□□□ 0.82
SDC1-204ENST00000429035 FHDC1Q9C0D6 1143 aaPredicted RBP20.2■□□□□ 0.82
SDC1-204ENST00000429035 KCNQ4P56696 695 aa20.19■□□□□ 0.82
SDC1-204ENST00000429035 NBPF6Q5VWK0 638 aa20.19■□□□□ 0.82
SDC1-204ENST00000429035 NBPF4Q96M43 638 aa20.19■□□□□ 0.82
SDC1-204ENST00000429035 PCGF6Q9BYE7 350 aa20.19■□□□□ 0.82
SDC1-204ENST00000429035 FLT4P35916 1363 aa20.19■□□□□ 0.82
SDC1-204ENST00000429035 SLC27A3Q5K4L6 730 aa20.18■□□□□ 0.82
SDC1-204ENST00000429035 KLHL34Q8N239 644 aa20.18■□□□□ 0.82
SDC1-204ENST00000429035 NSD2O96028 1365 aa20.18■□□□□ 0.82
SDC1-204ENST00000429035 TATP17735 454 aaPredicted RBP20.17■□□□□ 0.82
SDC1-204ENST00000429035 HSP90AB2PQ58FF8 381 aa20.17■□□□□ 0.82
SDC1-204ENST00000429035 ARXQ96QS3 562 aa20.16■□□□□ 0.82
SDC1-204ENST00000429035 INSRP06213 1382 aa20.16■□□□□ 0.82
SDC1-204ENST00000429035 MAP2P11137 1827 aaKnown RBP20.16■□□□□ 0.82
SDC1-204ENST00000429035 PPM1GO15355 546 aaPredicted RBP20.15■□□□□ 0.82
SDC1-204ENST00000429035 AKT1S1Q96B36 256 aa20.15■□□□□ 0.82
SDC1-204ENST00000429035 SYT17Q9BSW7 474 aa20.15■□□□□ 0.82
SDC1-204ENST00000429035 TFCP2L1Q9NZI6 479 aa20.15■□□□□ 0.82
SDC1-204ENST00000429035 ANKRD26Q9UPS8 1709 aa20.15■□□□□ 0.82
SDC1-204ENST00000429035 C5P01031 1676 aa20.14■□□□□ 0.81
SDC1-204ENST00000429035 CGNL1Q0VF96 1302 aa20.14■□□□□ 0.81
SDC1-204ENST00000429035 SGIP1Q9BQI5 828 aa20.14■□□□□ 0.81
SDC1-204ENST00000429035 CCNL1Q9UK58 526 aaPredicted RBP20.14■□□□□ 0.81
SDC1-204ENST00000429035 EMILIN1Q9Y6C2 1016 aa20.14■□□□□ 0.81
SDC1-204ENST00000429035 CHD4Q14839 1912 aa20.14■□□□□ 0.81
SDC1-204ENST00000429035 PKD1L3Q7Z443 1732 aa20.13■□□□□ 0.81
SDC1-204ENST00000429035 TOGARAM1Q9Y4F4 1720 aa20.13■□□□□ 0.81
SDC1-204ENST00000429035 PNPLA7Q6ZV29 1317 aa20.13■□□□□ 0.81
SDC1-204ENST00000429035 PCDH11XQ9BZA7 1347 aa20.13■□□□□ 0.81
SDC1-204ENST00000429035 PCDH11YQ9BZA8 1340 aa20.13■□□□□ 0.81
SDC1-204ENST00000429035 ITGB4P16144 1822 aa20.13■□□□□ 0.81
SDC1-204ENST00000429035 MSH5O43196 834 aa20.12■□□□□ 0.81
SDC1-204ENST00000429035 CARD14Q9BXL6 1004 aa20.12■□□□□ 0.81
SDC1-204ENST00000429035 KIF24Q5T7B8 1368 aa20.11■□□□□ 0.81
SDC1-204ENST00000429035 POLD1P28340 1107 aa20.11■□□□□ 0.81
SDC1-204ENST00000429035 TAF1LQ8IZX4 1826 aa20.1■□□□□ 0.81
SDC1-204ENST00000429035 COL24A1Q17RW2 1714 aa20.09■□□□□ 0.81
SDC1-204ENST00000429035 MPRIPQ6WCQ1 1025 aa20.07■□□□□ 0.8
SDC1-204ENST00000429035 PELP1Q8IZL8 1130 aaKnown RBP20.07■□□□□ 0.8
SDC1-204ENST00000429035 SLC16A10Q8TF71 515 aa20.07■□□□□ 0.8
SDC1-204ENST00000429035 TIMELESSQ9UNS1 1208 aa20.07■□□□□ 0.8
SDC1-204ENST00000429035 PALLDQ8WX93 1383 aa20.07■□□□□ 0.8
SDC1-204ENST00000429035 CLSPNQ9HAW4 1339 aa20.06■□□□□ 0.8
SDC1-204ENST00000429035 MAP3K5Q99683 1374 aa20.06■□□□□ 0.8
SDC1-204ENST00000429035 TNNT2P45379 298 aaPredicted RBP20.05■□□□□ 0.8
SDC1-204ENST00000429035 CYP27B1O15528 508 aa20.04■□□□□ 0.8
SDC1-204ENST00000429035 GPR162Q16538 588 aa20.04■□□□□ 0.8
SDC1-204ENST00000429035 MSL1Q68DK7 614 aa20.04■□□□□ 0.8
SDC1-204ENST00000429035 C4BP0C0L5 1744 aa20.03■□□□□ 0.8
SDC1-204ENST00000429035 NCAPD2Q15021 1401 aa20.02■□□□□ 0.79
SDC1-204ENST00000429035 COL23A1Q86Y22 540 aaPredicted RBP20.01■□□□□ 0.79
SDC1-204ENST00000429035 SPG7Q9UQ90 795 aa20.01■□□□□ 0.79
SDC1-204ENST00000429035 UTRNP46939 3433 aa20.01■□□□□ 0.79
SDC1-204ENST00000429035 EIF4G2P78344 907 aaKnown RBP eCLIP20■□□□□ 0.79
SDC1-204ENST00000429035 EYA1Q99502 592 aa20■□□□□ 0.79
SDC1-204ENST00000429035 WASHC2AQ641Q2 1341 aa20■□□□□ 0.79
SDC1-204ENST00000429035 HSPA5P11021 654 aaKnown RBP19.99■□□□□ 0.79
SDC1-204ENST00000429035 NLGN2Q8NFZ4 835 aa19.99■□□□□ 0.79
SDC1-204ENST00000429035 AK7Q96M32 723 aa19.99■□□□□ 0.79
SDC1-204ENST00000429035 UBR3Q6ZT12 1888 aa19.99■□□□□ 0.79
SDC1-204ENST00000429035 ZNF784Q8NCA9 323 aaPredicted RBP19.98■□□□□ 0.79
SDC1-204ENST00000429035 CCER1Q8TC90 406 aaPredicted RBP19.98■□□□□ 0.79
SDC1-204ENST00000429035 SMARCC1Q92922 1105 aaPredicted RBP19.98■□□□□ 0.79
SDC1-204ENST00000429035 POLKQ9UBT6 870 aa19.98■□□□□ 0.79
SDC1-204ENST00000429035 PHF14O94880 888 aa19.97■□□□□ 0.79
SDC1-204ENST00000429035 PIGBQ92521 554 aa19.96■□□□□ 0.79
SDC1-204ENST00000429035 EIF4A2Q14240 407 aaKnown RBP19.95■□□□□ 0.78
SDC1-204ENST00000429035 TMOD3Q9NYL9 352 aa19.95■□□□□ 0.78
SDC1-204ENST00000429035 PANK3Q9H999 370 aa19.94■□□□□ 0.78
SDC1-204ENST00000429035 HMGB2P26583 209 aaKnown RBP19.93■□□□□ 0.78
SDC1-204ENST00000429035 IFNL2Q8IZJ0 200 aa19.93■□□□□ 0.78
SDC1-204ENST00000429035 FLAD1Q8NFF5 587 aa19.93■□□□□ 0.78
SDC1-204ENST00000429035 PHKG2P15735 406 aa19.92■□□□□ 0.78
SDC1-204ENST00000429035 SMIM5Q71RC9 77 aa19.92■□□□□ 0.78
SDC1-204ENST00000429035 LOC102724428A0A0B4J2F2 783 aa19.91■□□□□ 0.78
SDC1-204ENST00000429035 SIK1P57059 783 aa19.91■□□□□ 0.78
SDC1-204ENST00000429035 NKX1-1Q15270 411 aaPredicted RBP19.91■□□□□ 0.78
SDC1-204ENST00000429035 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.9■□□□□ 0.78
SDC1-204ENST00000429035 ASAP1Q9ULH1 1129 aa19.9■□□□□ 0.78
SDC1-204ENST00000429035 AMIGO3Q86WK7 504 aa19.89■□□□□ 0.77
SDC1-204ENST00000429035 IGSF1Q8N6C5 1336 aa19.89■□□□□ 0.77
SDC1-204ENST00000429035 LINC00116Q8NCU8 138 aa19.89■□□□□ 0.77
SDC1-204ENST00000429035 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.88■□□□□ 0.77
SDC1-204ENST00000429035 MORC1Q86VD1 984 aa19.88■□□□□ 0.77
SDC1-204ENST00000429035 GNPATO15228 680 aa19.87■□□□□ 0.77
SDC1-204ENST00000429035 YBX3P16989 372 aaKnown RBP eCLIP19.87■□□□□ 0.77
SDC1-204ENST00000429035 ATP6V1AP38606 617 aa19.87■□□□□ 0.77
SDC1-204ENST00000429035 GOLGB1Q14789 3259 aaKnown RBP19.87■□□□□ 0.77
SDC1-204ENST00000429035 WWC3Q9ULE0 1092 aa19.86■□□□□ 0.77
SDC1-204ENST00000429035 SSFA2P28290 1259 aa19.85■□□□□ 0.77
SDC1-204ENST00000429035 ITPK1Q13572 414 aa19.85■□□□□ 0.77
SDC1-204ENST00000429035 ZNF530Q6P9A1 599 aaPredicted RBP19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms