RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 IKQ13123 557 aaPredicted RBP12.96□□□□□ -0.33
TCOF1-204ENST00000427724 NOL8Q76FK4 1167 aaKnown RBP12.96□□□□□ -0.33
TCOF1-204ENST00000427724 TRIM37O94972 964 aa12.96□□□□□ -0.34
TCOF1-204ENST00000427724 ANXA1P04083 346 aa12.96□□□□□ -0.34
TCOF1-204ENST00000427724 PIP4K2AP48426 406 aaPredicted RBP12.96□□□□□ -0.34
TCOF1-204ENST00000427724 NFATC2IPQ8NCF5 419 aa12.96□□□□□ -0.34
TCOF1-204ENST00000427724 LNPKQ9C0E8 428 aa12.96□□□□□ -0.34
TCOF1-204ENST00000427724 DIAPH3Q9NSV4 1193 aa12.96□□□□□ -0.34
TCOF1-204ENST00000427724 TBC1D2BQ9UPU7 963 aa12.96□□□□□ -0.34
TCOF1-204ENST00000427724 PARP3Q9Y6F1 533 aa12.96□□□□□ -0.34
TCOF1-204ENST00000427724 SPATA31E1Q6ZUB1 1445 aa12.96□□□□□ -0.34
TCOF1-204ENST00000427724 C16orf71Q8IYS4 520 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-204ENST00000427724 CDCA7Q9BWT1 371 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-204ENST00000427724 DDX19BQ9UMR2 479 aa12.95□□□□□ -0.34
TCOF1-204ENST00000427724 GNAI3P08754 354 aa12.95□□□□□ -0.34
TCOF1-204ENST00000427724 SETDB2Q96T68 719 aa12.95□□□□□ -0.34
TCOF1-204ENST00000427724 SPINK5Q9NQ38 1064 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-204ENST00000427724 PARD3Q8TEW0 1356 aa12.95□□□□□ -0.34
TCOF1-204ENST00000427724 A0A0U1RQG5 324 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-204ENST00000427724 ARHGEF10O15013 1369 aa12.95□□□□□ -0.34
TCOF1-204ENST00000427724 AEBP1Q8IUX7 1158 aa12.94□□□□□ -0.34
TCOF1-204ENST00000427724 PLCB2Q00722 1185 aa12.94□□□□□ -0.34
TCOF1-204ENST00000427724 ATP2B2Q01814 1243 aa12.94□□□□□ -0.34
TCOF1-204ENST00000427724 HSP90AB4PQ58FF6 505 aa12.94□□□□□ -0.34
TCOF1-204ENST00000427724 WWC1Q8IX03 1113 aa12.94□□□□□ -0.34
TCOF1-204ENST00000427724 PER1O15534 1290 aaPredicted RBP12.94□□□□□ -0.34
TCOF1-204ENST00000427724 SIRT1Q96EB6 747 aa12.94□□□□□ -0.34
TCOF1-204ENST00000427724 TESK2Q96S53 571 aa12.94□□□□□ -0.34
TCOF1-204ENST00000427724 MYD88Q99836 296 aa12.94□□□□□ -0.34
TCOF1-204ENST00000427724 ABCA8O94911 1581 aa12.94□□□□□ -0.34
TCOF1-204ENST00000427724 FAM83GA6ND36 823 aa12.93□□□□□ -0.34
TCOF1-204ENST00000427724 ATP5J2-PTCD1G3V325 749 aa12.93□□□□□ -0.34
TCOF1-204ENST00000427724 CLASRPQ8N2M8 674 aaKnown RBP12.93□□□□□ -0.34
TCOF1-204ENST00000427724 C22orf23Q9BZE7 217 aa12.93□□□□□ -0.34
TCOF1-204ENST00000427724 CEP126Q9P2H0 1117 aa12.93□□□□□ -0.34
TCOF1-204ENST00000427724 MAP3K19Q56UN5 1328 aa12.93□□□□□ -0.34
TCOF1-204ENST00000427724 UGGT1Q9NYU2 1555 aa12.93□□□□□ -0.34
TCOF1-204ENST00000427724 DNMT1P26358 1616 aaKnown RBP12.93□□□□□ -0.34
TCOF1-204ENST00000427724 TMOD2Q9NZR1 351 aa12.93□□□□□ -0.34
TCOF1-204ENST00000427724 ST5P78524 1137 aa12.92□□□□□ -0.34
TCOF1-204ENST00000427724 LARP1Q6PKG0 1096 aaKnown RBP12.92□□□□□ -0.34
TCOF1-204ENST00000427724 ABCF2Q9UG63 623 aa12.92□□□□□ -0.34
TCOF1-204ENST00000427724 RNF123Q5XPI4 1314 aa12.92□□□□□ -0.34
TCOF1-204ENST00000427724 TRAPPC3LQ5T215 181 aa12.92□□□□□ -0.34
TCOF1-204ENST00000427724 DDX46Q7L014 1031 aaKnown RBP12.92□□□□□ -0.34
TCOF1-204ENST00000427724 KRT27Q7Z3Y8 459 aa12.92□□□□□ -0.34
TCOF1-204ENST00000427724 IP6K1Q92551 441 aa12.92□□□□□ -0.34
TCOF1-204ENST00000427724 DNAJC2Q99543 621 aaKnown RBP12.92□□□□□ -0.34
TCOF1-204ENST00000427724 PRAG1Q86YV5 1406 aa12.92□□□□□ -0.34
TCOF1-204ENST00000427724 GOLGA6L4A6NEF3 574 aa12.91□□□□□ -0.34
TCOF1-204ENST00000427724 SNRPA1P09661 255 aaKnown RBP12.91□□□□□ -0.34
TCOF1-204ENST00000427724 HSP90AB3PQ58FF7 597 aa12.91□□□□□ -0.34
TCOF1-204ENST00000427724 AFF2P51816 1311 aa12.91□□□□□ -0.34
TCOF1-204ENST00000427724 MLH3Q9UHC1 1453 aa12.91□□□□□ -0.34
TCOF1-204ENST00000427724 A0A087WZG4 1122 aa12.91□□□□□ -0.34
TCOF1-204ENST00000427724 KDM4FA0A1W2PPD8 638 aa12.91□□□□□ -0.34
TCOF1-204ENST00000427724 FAM13BQ9NYF5 915 aa12.91□□□□□ -0.34
TCOF1-204ENST00000427724 ZCCHC11Q5TAX3 1644 aaKnown RBP12.91□□□□□ -0.34
TCOF1-204ENST00000427724 EIF4A2Q14240 407 aaKnown RBP12.91□□□□□ -0.34
TCOF1-204ENST00000427724 BRINP3Q76B58 766 aa12.91□□□□□ -0.34
TCOF1-204ENST00000427724 SEPT12Q8IYM1 358 aa12.91□□□□□ -0.34
TCOF1-204ENST00000427724 MSL1Q68DK7 614 aa12.9□□□□□ -0.34
TCOF1-204ENST00000427724 CFAP44Q96MT7 982 aa12.9□□□□□ -0.34
TCOF1-204ENST00000427724 NIP7Q9Y221 180 aaKnown RBP eCLIP12.9□□□□□ -0.34
TCOF1-204ENST00000427724 GCC2Q8IWJ2 1684 aa12.9□□□□□ -0.34
TCOF1-204ENST00000427724 EYA1Q99502 592 aa12.9□□□□□ -0.34
TCOF1-204ENST00000427724 CHMP5Q9NZZ3 219 aa12.9□□□□□ -0.34
TCOF1-204ENST00000427724 TRPM2O94759 1503 aa12.9□□□□□ -0.34
TCOF1-204ENST00000427724 HOXC9P31274 260 aa12.9□□□□□ -0.34
TCOF1-204ENST00000427724 JARID2Q92833 1246 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-204ENST00000427724 TRDNQ13061 729 aa12.89□□□□□ -0.35
TCOF1-204ENST00000427724 SYNE3Q6ZMZ3 975 aa12.89□□□□□ -0.35
TCOF1-204ENST00000427724 STK11IPQ8N1F8 1099 aa12.89□□□□□ -0.35
TCOF1-204ENST00000427724 C1orf115Q9H7X2 142 aa12.89□□□□□ -0.35
TCOF1-204ENST00000427724 METP08581 1390 aa12.89□□□□□ -0.35
TCOF1-204ENST00000427724 AKAP17AQ02040 695 aaKnown RBP12.89□□□□□ -0.35
TCOF1-204ENST00000427724 METTL24Q5JXM2 366 aa12.89□□□□□ -0.35
TCOF1-204ENST00000427724 CCDC158Q5M9N0 1113 aa12.89□□□□□ -0.35
TCOF1-204ENST00000427724 ZMYND15Q9H091 742 aa12.89□□□□□ -0.35
TCOF1-204ENST00000427724 IGHDP01880 384 aa12.89□□□□□ -0.35
TCOF1-204ENST00000427724 PPP1R42Q7Z4L9 355 aa12.89□□□□□ -0.35
TCOF1-204ENST00000427724 TCEAL9Q9UHQ7 104 aa12.89□□□□□ -0.35
TCOF1-204ENST00000427724 RASSF8Q8NHQ8 419 aa12.88□□□□□ -0.35
TCOF1-204ENST00000427724 PODXL2Q9NZ53 605 aa12.88□□□□□ -0.35
TCOF1-204ENST00000427724 POLKQ9UBT6 870 aa12.88□□□□□ -0.35
TCOF1-204ENST00000427724 PLEKHH1Q9ULM0 1364 aa12.88□□□□□ -0.35
TCOF1-204ENST00000427724 WDHD1O75717 1129 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-204ENST00000427724 TTC39AQ5SRH9 613 aa12.88□□□□□ -0.35
TCOF1-204ENST00000427724 FOXD4L5Q5VV16 416 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-204ENST00000427724 FOXD4L4Q8WXT5 416 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-204ENST00000427724 DBF4Q9UBU7 674 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-204ENST00000427724 NLRP3Q96P20 1036 aa12.88□□□□□ -0.35
TCOF1-204ENST00000427724 RAI14Q9P0K7 980 aa12.88□□□□□ -0.35
TCOF1-204ENST00000427724 DDX11L8A8MPP1 907 aa12.87□□□□□ -0.35
TCOF1-204ENST00000427724 FKBP4Q02790 459 aaKnown RBP eCLIP12.87□□□□□ -0.35
TCOF1-204ENST00000427724 FAM196AQ6ZSG2 479 aa12.87□□□□□ -0.35
TCOF1-204ENST00000427724 JDP2Q8WYK2 163 aa12.87□□□□□ -0.35
TCOF1-204ENST00000427724 NKTRP30414 1462 aaKnown RBP12.87□□□□□ -0.35
TCOF1-204ENST00000427724 DCAF5Q96JK2 942 aa12.87□□□□□ -0.35
TCOF1-204ENST00000427724 SRGAP3O43295 1099 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms