RNA–Protein interactions for RNA: ENST00000427478.6

CNEP1R1-202, Transcript of CTD nuclear envelope phosphatase 1 regulatory subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNEP1R1, Length 2,117 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNEP1R1-202ENST00000427478 USHBP1Q8N6Y0 703 aa27.77■■■□□ 2.04
CNEP1R1-202ENST00000427478 NCOA3Q9Y6Q9 1424 aa27.77■■■□□ 2.04
CNEP1R1-202ENST00000427478 ALS2Q96Q42 1657 aa27.76■■■□□ 2.04
CNEP1R1-202ENST00000427478 LMTK3Q96Q04 1460 aa27.76■■■□□ 2.03
CNEP1R1-202ENST00000427478 KDM4FA0A1W2PPD8 638 aa27.76■■■□□ 2.03
CNEP1R1-202ENST00000427478 PDE4AP27815 886 aa27.76■■■□□ 2.03
CNEP1R1-202ENST00000427478 DDX19BQ9UMR2 479 aa27.76■■■□□ 2.03
CNEP1R1-202ENST00000427478 GCP02774 474 aa27.76■■■□□ 2.03
CNEP1R1-202ENST00000427478 STRCQ7RTU9 1775 aa27.76■■■□□ 2.03
CNEP1R1-202ENST00000427478 LRRC37A3O60309 1634 aa27.75■■■□□ 2.03
CNEP1R1-202ENST00000427478 XIRP1Q702N8 1843 aaKnown RBP27.75■■■□□ 2.03
CNEP1R1-202ENST00000427478 RGS3P49796 1198 aa27.73■■■□□ 2.03
CNEP1R1-202ENST00000427478 KRT24Q2M2I5 525 aa27.73■■■□□ 2.03
CNEP1R1-202ENST00000427478 USP19O94966 1318 aa27.73■■■□□ 2.03
CNEP1R1-202ENST00000427478 BACH2Q9BYV9 841 aa27.72■■■□□ 2.03
CNEP1R1-202ENST00000427478 NBPF6Q5VWK0 638 aa27.7■■■□□ 2.03
CNEP1R1-202ENST00000427478 ARHGEF25Q86VW2 580 aa27.7■■■□□ 2.03
CNEP1R1-202ENST00000427478 NBPF4Q96M43 638 aa27.7■■■□□ 2.03
CNEP1R1-202ENST00000427478 MIS18AQ9NYP9 233 aa27.7■■■□□ 2.03
CNEP1R1-202ENST00000427478 ARHGAP45Q92619 1136 aa27.7■■■□□ 2.02
CNEP1R1-202ENST00000427478 MSH6P52701 1360 aa27.7■■■□□ 2.02
CNEP1R1-202ENST00000427478 KIAA0232Q92628 1395 aa27.7■■■□□ 2.02
CNEP1R1-202ENST00000427478 GNAT3A8MTJ3 354 aa27.69■■■□□ 2.02
CNEP1R1-202ENST00000427478 CADPS2Q86UW7 1296 aa27.69■■■□□ 2.02
CNEP1R1-202ENST00000427478 DDX17Q92841 729 aaKnown RBP27.69■■■□□ 2.02
CNEP1R1-202ENST00000427478 MAP3K5Q99683 1374 aa27.68■■■□□ 2.02
CNEP1R1-202ENST00000427478 HTATSF1O43719 755 aaKnown RBP27.68■■■□□ 2.02
CNEP1R1-202ENST00000427478 RWDD1Q9H446 243 aaPredicted RBP27.68■■■□□ 2.02
CNEP1R1-202ENST00000427478 TSPYL4Q9UJ04 414 aa27.68■■■□□ 2.02
CNEP1R1-202ENST00000427478 MED1Q15648 1581 aaPredicted RBP27.68■■■□□ 2.02
CNEP1R1-202ENST00000427478 RGPD5Q99666 1765 aa27.67■■■□□ 2.02
CNEP1R1-202ENST00000427478 LRRC59Q96AG4 307 aaKnown RBP27.67■■■□□ 2.02
CNEP1R1-202ENST00000427478 HAP1P54257 671 aaPredicted RBP27.65■■■□□ 2.02
CNEP1R1-202ENST00000427478 ZBTB40Q9NUA8 1239 aa27.65■■■□□ 2.02
CNEP1R1-202ENST00000427478 ABCC4O15439 1325 aa27.63■■■□□ 2.01
CNEP1R1-202ENST00000427478 MSH5O43196 834 aa27.63■■■□□ 2.01
CNEP1R1-202ENST00000427478 IL17REQ8NFR9 667 aa27.61■■■□□ 2.01
CNEP1R1-202ENST00000427478 ANKRD24Q8TF21 1146 aa27.61■■■□□ 2.01
CNEP1R1-202ENST00000427478 API5Q9BZZ5 524 aaKnown RBP27.61■■■□□ 2.01
CNEP1R1-202ENST00000427478 NPHP3Q7Z494 1330 aa27.61■■■□□ 2.01
CNEP1R1-202ENST00000427478 CAMTA1Q9Y6Y1 1673 aa27.61■■■□□ 2.01
CNEP1R1-202ENST00000427478 ANP32AP39687 249 aaKnown RBP27.59■■■□□ 2.01
CNEP1R1-202ENST00000427478 AXIN2Q9Y2T1 843 aa27.59■■■□□ 2.01
CNEP1R1-202ENST00000427478 ZC3H6P61129 1189 aaKnown RBP27.59■■■□□ 2.01
CNEP1R1-202ENST00000427478 NCAPD2Q15021 1401 aa27.58■■■□□ 2.01
CNEP1R1-202ENST00000427478 HDAC1Q13547 482 aaPredicted RBP27.58■■■□□ 2.01
CNEP1R1-202ENST00000427478 PDZRN3Q9UPQ7 1066 aa27.58■■■□□ 2.01
CNEP1R1-202ENST00000427478 LMO7Q8WWI1 1683 aa27.58■■■□□ 2.01
CNEP1R1-202ENST00000427478 TNS3Q68CZ2 1445 aa27.58■■■□□ 2.01
CNEP1R1-202ENST00000427478 PXDNQ92626 1479 aa27.58■■■□□ 2.01
CNEP1R1-202ENST00000427478 FAM161AQ3B820 660 aa27.58■■■□□ 2.01
CNEP1R1-202ENST00000427478 VIRMAQ69YN4 1812 aaKnown RBP27.57■■■□□ 2
CNEP1R1-202ENST00000427478 ZBTB7BO15156 539 aaPredicted RBP27.56■■■□□ 2
CNEP1R1-202ENST00000427478 NPM2Q86SE8 214 aaKnown RBP27.56■■■□□ 2
CNEP1R1-202ENST00000427478 ZNF335Q9H4Z2 1342 aaPredicted RBP27.56■■■□□ 2
CNEP1R1-202ENST00000427478 C8orf34Q49A92 452 aa27.55■■■□□ 2
CNEP1R1-202ENST00000427478 RGS12O14924 1447 aa27.55■■■□□ 2
CNEP1R1-202ENST00000427478 FAM208AQ9UK61 1670 aaKnown RBP27.54■■■□□ 2
CNEP1R1-202ENST00000427478 CRYBG1Q9Y4K1 1723 aa27.54■■■□□ 2
CNEP1R1-202ENST00000427478 CHMP4BQ9H444 224 aaKnown RBP27.54■■■□□ 2
CNEP1R1-202ENST00000427478 TAF7Q15545 349 aaPredicted RBP27.53■■■□□ 2
CNEP1R1-202ENST00000427478 CEMIPQ8WUJ3 1361 aa27.52■■■□□ 2
CNEP1R1-202ENST00000427478 ZNF530Q6P9A1 599 aaPredicted RBP27.52■■■□□ 2
CNEP1R1-202ENST00000427478 CABLES1Q8TDN4 633 aa27.52■■■□□ 2
CNEP1R1-202ENST00000427478 ERBB3P21860 1342 aa27.51■■□□□ 1.99
CNEP1R1-202ENST00000427478 SLC4A2P04920 1241 aa27.51■■□□□ 1.99
CNEP1R1-202ENST00000427478 PLEKHO1Q53GL0 409 aaPredicted RBP27.51■■□□□ 1.99
CNEP1R1-202ENST00000427478 C1orf115Q9H7X2 142 aa27.51■■□□□ 1.99
CNEP1R1-202ENST00000427478 COL18A1P39060 1754 aa27.51■■□□□ 1.99
CNEP1R1-202ENST00000427478 PTPRCP08575 1304 aa27.51■■□□□ 1.99
CNEP1R1-202ENST00000427478 BRINP3Q76B58 766 aa27.5■■□□□ 1.99
CNEP1R1-202ENST00000427478 SPATA31A3Q5VYP0 1347 aa27.5■■□□□ 1.99
CNEP1R1-202ENST00000427478 BABAM1Q9NWV8 329 aa27.5■■□□□ 1.99
CNEP1R1-202ENST00000427478 KDM3BQ7LBC6 1761 aa27.49■■□□□ 1.99
CNEP1R1-202ENST00000427478 AMOTQ4VCS5 1084 aa27.49■■□□□ 1.99
CNEP1R1-202ENST00000427478 AKAP4Q5JQC9 854 aa27.49■■□□□ 1.99
CNEP1R1-202ENST00000427478 LGR6Q9HBX8 967 aa27.49■■□□□ 1.99
CNEP1R1-202ENST00000427478 SMC5Q8IY18 1101 aa27.47■■□□□ 1.99
CNEP1R1-202ENST00000427478 INTS3Q68E01 1043 aaKnown RBP27.47■■□□□ 1.99
CNEP1R1-202ENST00000427478 G2E3Q7L622 706 aa27.45■■□□□ 1.98
CNEP1R1-202ENST00000427478 MPRIPQ6WCQ1 1025 aa27.44■■□□□ 1.98
CNEP1R1-202ENST00000427478 IPO9Q96P70 1041 aaKnown RBP27.44■■□□□ 1.98
CNEP1R1-202ENST00000427478 STK31Q9BXU1 1019 aa27.44■■□□□ 1.98
CNEP1R1-202ENST00000427478 C1orf141Q5JVX7 400 aa27.44■■□□□ 1.98
CNEP1R1-202ENST00000427478 CACNA1FO60840 1977 aa27.44■■□□□ 1.98
CNEP1R1-202ENST00000427478 NECTIN2Q92692 538 aa27.43■■□□□ 1.98
CNEP1R1-202ENST00000427478 CCDC30Q5VVM6 783 aa27.43■■□□□ 1.98
CNEP1R1-202ENST00000427478 CHRNA2Q15822 529 aa27.42■■□□□ 1.98
CNEP1R1-202ENST00000427478 SLAIN2Q9P270 581 aa27.42■■□□□ 1.98
CNEP1R1-202ENST00000427478 ABCC6O95255 1503 aa27.41■■□□□ 1.98
CNEP1R1-202ENST00000427478 NLRP2Q9NX02 1062 aa27.41■■□□□ 1.98
CNEP1R1-202ENST00000427478 SOS1Q07889 1333 aaPredicted RBP27.41■■□□□ 1.98
CNEP1R1-202ENST00000427478 TEFQ10587 303 aa27.41■■□□□ 1.98
CNEP1R1-202ENST00000427478 RNMTO43148 476 aaKnown RBP27.39■■□□□ 1.98
CNEP1R1-202ENST00000427478 CSB-PGBD3P0DP91 1061 aa27.38■■□□□ 1.97
CNEP1R1-202ENST00000427478 ERICH6Q7L0X2 663 aa27.38■■□□□ 1.97
CNEP1R1-202ENST00000427478 SIRT2Q8IXJ6 389 aa27.38■■□□□ 1.97
CNEP1R1-202ENST00000427478 OVOS2A0A0G2JMS6 1433 aa27.38■■□□□ 1.97
CNEP1R1-202ENST00000427478 SIPA1L3O60292 1781 aaPredicted RBP27.38■■□□□ 1.97
CNEP1R1-202ENST00000427478 F6X3S4 739 aa27.37■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms