RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 NEUROD1Q13562 356 aa23.8■■□□□ 1.4
CHCHD3-202ENST00000423635 SHANK3Q9BYB0 1731 aa23.79■■□□□ 1.4
CHCHD3-202ENST00000423635 CEP350Q5VT06 3117 aa23.79■■□□□ 1.4
CHCHD3-202ENST00000423635 YBX3P16989 372 aaKnown RBP eCLIP23.79■■□□□ 1.46e-7■■■□□ 17.7
CHCHD3-202ENST00000423635 LTV1Q96GA3 475 aaPredicted RBP23.79■■□□□ 1.4
CHCHD3-202ENST00000423635 TUBGCP6Q96RT7 1819 aa23.78■■□□□ 1.4
CHCHD3-202ENST00000423635 LY75O60449 1722 aa23.78■■□□□ 1.4
CHCHD3-202ENST00000423635 A0A1W2PP64 1363 aa23.78■■□□□ 1.4
CHCHD3-202ENST00000423635 ZCRB1Q8TBF4 217 aaKnown RBP23.78■■□□□ 1.4
CHCHD3-202ENST00000423635 FAM208AQ9UK61 1670 aaKnown RBP23.78■■□□□ 1.4
CHCHD3-202ENST00000423635 COL23A1Q86Y22 540 aaPredicted RBP23.77■■□□□ 1.4
CHCHD3-202ENST00000423635 CARD11Q9BXL7 1154 aa23.77■■□□□ 1.4
CHCHD3-202ENST00000423635 CCNL1Q9UK58 526 aaPredicted RBP23.77■■□□□ 1.4
CHCHD3-202ENST00000423635 HOXC9P31274 260 aa23.75■■□□□ 1.39
CHCHD3-202ENST00000423635 MAP3K19Q56UN5 1328 aa23.74■■□□□ 1.39
CHCHD3-202ENST00000423635 DOT1LQ8TEK3 1739 aa23.72■■□□□ 1.39
CHCHD3-202ENST00000423635 COG3Q96JB2 828 aa23.72■■□□□ 1.39
CHCHD3-202ENST00000423635 MSH5O43196 834 aa23.71■■□□□ 1.39
CHCHD3-202ENST00000423635 AMPHP49418 695 aa23.71■■□□□ 1.39
CHCHD3-202ENST00000423635 USP47Q96K76 1375 aa23.71■■□□□ 1.39
CHCHD3-202ENST00000423635 HMGB2P26583 209 aaKnown RBP23.7■■□□□ 1.38
CHCHD3-202ENST00000423635 CD2APQ9Y5K6 639 aa23.7■■□□□ 1.38
CHCHD3-202ENST00000423635 CGNL1Q0VF96 1302 aa23.7■■□□□ 1.38
CHCHD3-202ENST00000423635 MEGF6O75095 1541 aa23.69■■□□□ 1.38
CHCHD3-202ENST00000423635 FBLN1P23142 703 aa23.69■■□□□ 1.38
CHCHD3-202ENST00000423635 NBPF6Q5VWK0 638 aa23.67■■□□□ 1.38
CHCHD3-202ENST00000423635 FLAD1Q8NFF5 587 aa23.67■■□□□ 1.38
CHCHD3-202ENST00000423635 NBPF4Q96M43 638 aa23.67■■□□□ 1.38
CHCHD3-202ENST00000423635 ATP10DQ9P241 1426 aa23.67■■□□□ 1.38
CHCHD3-202ENST00000423635 MSL1Q68DK7 614 aa23.66■■□□□ 1.38
CHCHD3-202ENST00000423635 RGPD2P0DJD1 1756 aa23.65■■□□□ 1.38
CHCHD3-202ENST00000423635 RTL1A6NKG5 1358 aa23.64■■□□□ 1.37
CHCHD3-202ENST00000423635 TESK2Q96S53 571 aa23.63■■□□□ 1.37
CHCHD3-202ENST00000423635 GPBP1L1Q9HC44 474 aaPredicted RBP23.63■■□□□ 1.37
CHCHD3-202ENST00000423635 RAPGEF4Q8WZA2 1011 aa23.62■■□□□ 1.37
CHCHD3-202ENST00000423635 ADCY9O60503 1353 aa23.62■■□□□ 1.37
CHCHD3-202ENST00000423635 SLC24A1O60721 1099 aa23.61■■□□□ 1.37
CHCHD3-202ENST00000423635 HSPA6P17066 643 aa23.59■■□□□ 1.37
CHCHD3-202ENST00000423635 TATP17735 454 aaPredicted RBP23.59■■□□□ 1.37
CHCHD3-202ENST00000423635 RRS1Q15050 365 aaKnown RBP23.59■■□□□ 1.37
CHCHD3-202ENST00000423635 USHBP1Q8N6Y0 703 aa23.59■■□□□ 1.37
CHCHD3-202ENST00000423635 C5P01031 1676 aa23.59■■□□□ 1.37
CHCHD3-202ENST00000423635 PALLDQ8WX93 1383 aa23.58■■□□□ 1.37
CHCHD3-202ENST00000423635 FYB1O15117 783 aa23.58■■□□□ 1.36
CHCHD3-202ENST00000423635 PCDH11XQ9BZA7 1347 aa23.57■■□□□ 1.36
CHCHD3-202ENST00000423635 PCDH11YQ9BZA8 1340 aa23.57■■□□□ 1.36
CHCHD3-202ENST00000423635 ST20-MTHFSA0A0A6YYL1 179 aa23.57■■□□□ 1.36
CHCHD3-202ENST00000423635 MPRIPQ6WCQ1 1025 aa23.57■■□□□ 1.36
CHCHD3-202ENST00000423635 TAF1LQ8IZX4 1826 aa23.56■■□□□ 1.36
CHCHD3-202ENST00000423635 SMARCC1Q92922 1105 aaPredicted RBP23.56■■□□□ 1.36
CHCHD3-202ENST00000423635 SMG6Q86US8 1419 aaKnown RBP23.55■■□□□ 1.36
CHCHD3-202ENST00000423635 INSRP06213 1382 aa23.54■■□□□ 1.36
CHCHD3-202ENST00000423635 CYP27B1O15528 508 aa23.54■■□□□ 1.36
CHCHD3-202ENST00000423635 HSP90AB2PQ58FF8 381 aa23.54■■□□□ 1.36
CHCHD3-202ENST00000423635 AMIGO3Q86WK7 504 aa23.54■■□□□ 1.36
CHCHD3-202ENST00000423635 GGNBP2Q9H3C7 697 aa23.54■■□□□ 1.36
CHCHD3-202ENST00000423635 AK7Q96M32 723 aa23.53■■□□□ 1.36
CHCHD3-202ENST00000423635 IGSF1Q8N6C5 1336 aa23.52■■□□□ 1.36
CHCHD3-202ENST00000423635 ZNF526Q8TF50 670 aaPredicted RBP23.52■■□□□ 1.36
CHCHD3-202ENST00000423635 C4BP0C0L5 1744 aa23.51■■□□□ 1.35
CHCHD3-202ENST00000423635 KIF24Q5T7B8 1368 aa23.5■■□□□ 1.35
CHCHD3-202ENST00000423635 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.5■■□□□ 1.35
CHCHD3-202ENST00000423635 NKX1-1Q15270 411 aaPredicted RBP23.5■■□□□ 1.35
CHCHD3-202ENST00000423635 PIGBQ92521 554 aa23.5■■□□□ 1.35
CHCHD3-202ENST00000423635 SSFA2P28290 1259 aa23.49■■□□□ 1.35
CHCHD3-202ENST00000423635 NSD3Q9BZ95 1437 aa23.49■■□□□ 1.35
CHCHD3-202ENST00000423635 TONSLQ96HA7 1378 aa23.48■■□□□ 1.35
CHCHD3-202ENST00000423635 KIF3CO14782 793 aa23.48■■□□□ 1.35
CHCHD3-202ENST00000423635 FLT4P35916 1363 aa23.48■■□□□ 1.35
CHCHD3-202ENST00000423635 TOGARAM1Q9Y4F4 1720 aa23.47■■□□□ 1.35
CHCHD3-202ENST00000423635 PHF14O94880 888 aa23.47■■□□□ 1.35
CHCHD3-202ENST00000423635 SMIM5Q71RC9 77 aa23.47■■□□□ 1.35
CHCHD3-202ENST00000423635 UBR3Q6ZT12 1888 aa23.46■■□□□ 1.35
CHCHD3-202ENST00000423635 ITGB4P16144 1822 aa23.46■■□□□ 1.35
CHCHD3-202ENST00000423635 LOC102724428A0A0B4J2F2 783 aa23.45■■□□□ 1.34
CHCHD3-202ENST00000423635 SIK1P57059 783 aa23.45■■□□□ 1.34
CHCHD3-202ENST00000423635 LINC00116Q8NCU8 138 aa23.44■■□□□ 1.34
CHCHD3-202ENST00000423635 WWC3Q9ULE0 1092 aa23.44■■□□□ 1.34
CHCHD3-202ENST00000423635 MAP2P11137 1827 aaKnown RBP23.42■■□□□ 1.34
CHCHD3-202ENST00000423635 TMF1P82094 1093 aa23.42■■□□□ 1.34
CHCHD3-202ENST00000423635 NCAPD2Q15021 1401 aa23.42■■□□□ 1.34
CHCHD3-202ENST00000423635 SPG7Q9UQ90 795 aa23.41■■□□□ 1.34
CHCHD3-202ENST00000423635 PKD1L3Q7Z443 1732 aa23.41■■□□□ 1.34
CHCHD3-202ENST00000423635 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.4■■□□□ 1.347e-7■■■□□ 17.9
CHCHD3-202ENST00000423635 APLP1P51693 650 aa23.39■■□□□ 1.34
CHCHD3-202ENST00000423635 ITPK1Q13572 414 aa23.39■■□□□ 1.34
CHCHD3-202ENST00000423635 CICQ96RK0 1608 aaPredicted RBP23.39■■□□□ 1.33
CHCHD3-202ENST00000423635 TGFB2P61812 414 aa23.38■■□□□ 1.33
CHCHD3-202ENST00000423635 ASAP1Q9ULH1 1129 aa23.38■■□□□ 1.33
CHCHD3-202ENST00000423635 EMILIN1Q9Y6C2 1016 aa23.38■■□□□ 1.33
CHCHD3-202ENST00000423635 GNPATO15228 680 aa23.37■■□□□ 1.33
CHCHD3-202ENST00000423635 ATP6V1AP38606 617 aa23.37■■□□□ 1.33
CHCHD3-202ENST00000423635 TMOD3Q9NYL9 352 aa23.37■■□□□ 1.33
CHCHD3-202ENST00000423635 TOMM70O94826 608 aa23.36■■□□□ 1.33
CHCHD3-202ENST00000423635 MMP10P09238 476 aa23.36■■□□□ 1.33
CHCHD3-202ENST00000423635 DNAJC5GQ8N7S2 189 aa23.36■■□□□ 1.33
CHCHD3-202ENST00000423635 CARD14Q9BXL6 1004 aa23.35■■□□□ 1.33
CHCHD3-202ENST00000423635 CDCA8Q53HL2 280 aa23.34■■□□□ 1.33
CHCHD3-202ENST00000423635 IFNL2Q8IZJ0 200 aa23.34■■□□□ 1.33
CHCHD3-202ENST00000423635 EYA1Q99502 592 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms