RNA–Protein interactions for RNA: ENST00000415758.1

DDX56-202, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 1,287 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-202ENST00000415758 TONSLQ96HA7 1378 aa21.73■■□□□ 1.07
DDX56-202ENST00000415758 AMPHP49418 695 aa21.72■■□□□ 1.07
DDX56-202ENST00000415758 GPR162Q16538 588 aa21.72■■□□□ 1.07
DDX56-202ENST00000415758 DOT1LQ8TEK3 1739 aa21.72■■□□□ 1.07
DDX56-202ENST00000415758 SHANK3Q9BYB0 1731 aa21.72■■□□□ 1.07
DDX56-202ENST00000415758 TUBGCP6Q96RT7 1819 aa21.71■■□□□ 1.07
DDX56-202ENST00000415758 ST20-MTHFSA0A0A6YYL1 179 aa21.71■■□□□ 1.07
DDX56-202ENST00000415758 FBLN1P23142 703 aa21.71■■□□□ 1.07
DDX56-202ENST00000415758 SYTL4Q96C24 671 aaPredicted RBP21.71■■□□□ 1.07
DDX56-202ENST00000415758 RGPD2P0DJD1 1756 aa21.71■■□□□ 1.07
DDX56-202ENST00000415758 GOLGB1Q14789 3259 aaKnown RBP21.7■■□□□ 1.06
DDX56-202ENST00000415758 KCNQ4P56696 695 aa21.7■■□□□ 1.06
DDX56-202ENST00000415758 C1QTNF8P60827 252 aa21.69■■□□□ 1.06
DDX56-202ENST00000415758 CGNL1Q0VF96 1302 aa21.69■■□□□ 1.06
DDX56-202ENST00000415758 RTL1A6NKG5 1358 aa21.69■■□□□ 1.06
DDX56-202ENST00000415758 MEGF6O75095 1541 aa21.69■■□□□ 1.06
DDX56-202ENST00000415758 NBPF6Q5VWK0 638 aa21.66■■□□□ 1.06
DDX56-202ENST00000415758 NBPF4Q96M43 638 aa21.66■■□□□ 1.06
DDX56-202ENST00000415758 CCNL1Q9UK58 526 aaPredicted RBP21.66■■□□□ 1.06
DDX56-202ENST00000415758 FYB1O15117 783 aa21.65■■□□□ 1.06
DDX56-202ENST00000415758 USP47Q96K76 1375 aa21.64■■□□□ 1.06
DDX56-202ENST00000415758 KLHL34Q8N239 644 aa21.64■■□□□ 1.05
DDX56-202ENST00000415758 RRS1Q15050 365 aaKnown RBP21.63■■□□□ 1.05
DDX56-202ENST00000415758 COL23A1Q86Y22 540 aaPredicted RBP21.63■■□□□ 1.05
DDX56-202ENST00000415758 NLGN2Q8NFZ4 835 aa21.63■■□□□ 1.05
DDX56-202ENST00000415758 HMGB2P26583 209 aaKnown RBP21.62■■□□□ 1.05
DDX56-202ENST00000415758 RAPGEF4Q8WZA2 1011 aa21.62■■□□□ 1.05
DDX56-202ENST00000415758 SENP3-EIF4A1A0A087X0R7 540 aa21.61■■□□□ 1.05
DDX56-202ENST00000415758 GRIN3BO60391 1043 aa21.6■■□□□ 1.05
DDX56-202ENST00000415758 GGNBP2Q9H3C7 697 aa21.6■■□□□ 1.05
DDX56-202ENST00000415758 SMG6Q86US8 1419 aaKnown RBP21.6■■□□□ 1.05
DDX56-202ENST00000415758 INSRP06213 1382 aa21.6■■□□□ 1.05
DDX56-202ENST00000415758 TATP17735 454 aaPredicted RBP21.59■■□□□ 1.05
DDX56-202ENST00000415758 PELP1Q8IZL8 1130 aaKnown RBP21.59■■□□□ 1.05
DDX56-202ENST00000415758 KIF24Q5T7B8 1368 aa21.59■■□□□ 1.05
DDX56-202ENST00000415758 TMF1P82094 1093 aa21.58■■□□□ 1.05
DDX56-202ENST00000415758 USHBP1Q8N6Y0 703 aa21.58■■□□□ 1.05
DDX56-202ENST00000415758 PCDH11XQ9BZA7 1347 aa21.57■■□□□ 1.04
DDX56-202ENST00000415758 PCDH11YQ9BZA8 1340 aa21.57■■□□□ 1.04
DDX56-202ENST00000415758 C5P01031 1676 aa21.57■■□□□ 1.04
DDX56-202ENST00000415758 MSH5O43196 834 aa21.57■■□□□ 1.04
DDX56-202ENST00000415758 YBX3P16989 372 aaKnown RBP eCLIP21.57■■□□□ 1.04
DDX56-202ENST00000415758 HSP90AB2PQ58FF8 381 aa21.57■■□□□ 1.04
DDX56-202ENST00000415758 GIGYF1O75420 1035 aaPredicted RBP21.56■■□□□ 1.04
DDX56-202ENST00000415758 FLAD1Q8NFF5 587 aa21.56■■□□□ 1.04
DDX56-202ENST00000415758 TAF1LQ8IZX4 1826 aa21.55■■□□□ 1.04
DDX56-202ENST00000415758 FLT4P35916 1363 aa21.55■■□□□ 1.04
DDX56-202ENST00000415758 CD2APQ9Y5K6 639 aa21.54■■□□□ 1.04
DDX56-202ENST00000415758 PALLDQ8WX93 1383 aa21.53■■□□□ 1.04
DDX56-202ENST00000415758 CYP27B1O15528 508 aa21.53■■□□□ 1.04
DDX56-202ENST00000415758 CDCA8Q53HL2 280 aa21.52■■□□□ 1.04
DDX56-202ENST00000415758 MSL1Q68DK7 614 aa21.52■■□□□ 1.04
DDX56-202ENST00000415758 MPRIPQ6WCQ1 1025 aa21.52■■□□□ 1.04
DDX56-202ENST00000415758 KIF20BQ96Q89 1820 aa21.52■■□□□ 1.04
DDX56-202ENST00000415758 SMARCC1Q92922 1105 aaPredicted RBP21.51■■□□□ 1.03
DDX56-202ENST00000415758 ITGB4P16144 1822 aa21.5■■□□□ 1.03
DDX56-202ENST00000415758 NCAPD2Q15021 1401 aa21.49■■□□□ 1.03
DDX56-202ENST00000415758 NKX1-1Q15270 411 aaPredicted RBP21.49■■□□□ 1.03
DDX56-202ENST00000415758 CARD14Q9BXL6 1004 aa21.49■■□□□ 1.03
DDX56-202ENST00000415758 PKD1L3Q7Z443 1732 aa21.49■■□□□ 1.03
DDX56-202ENST00000415758 TOGARAM1Q9Y4F4 1720 aa21.49■■□□□ 1.03
DDX56-202ENST00000415758 C4BP0C0L5 1744 aa21.48■■□□□ 1.03
DDX56-202ENST00000415758 PIGBQ92521 554 aa21.46■■□□□ 1.03
DDX56-202ENST00000415758 EMILIN1Q9Y6C2 1016 aa21.46■■□□□ 1.03
DDX56-202ENST00000415758 UBR3Q6ZT12 1888 aa21.45■■□□□ 1.02
DDX56-202ENST00000415758 AMIGO3Q86WK7 504 aa21.45■■□□□ 1.02
DDX56-202ENST00000415758 AK7Q96M32 723 aa21.45■■□□□ 1.02
DDX56-202ENST00000415758 MAP2P11137 1827 aaKnown RBP21.44■■□□□ 1.02
DDX56-202ENST00000415758 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.44■■□□□ 1.025e-8■□□□□ 9.5
DDX56-202ENST00000415758 SPG7Q9UQ90 795 aa21.44■■□□□ 1.02
DDX56-202ENST00000415758 NSD3Q9BZ95 1437 aa21.44■■□□□ 1.02
DDX56-202ENST00000415758 WASHC2AQ641Q2 1341 aa21.43■■□□□ 1.02
DDX56-202ENST00000415758 ATP10DQ9P241 1426 aa21.43■■□□□ 1.02
DDX56-202ENST00000415758 CEP350Q5VT06 3117 aa21.43■■□□□ 1.02
DDX56-202ENST00000415758 ANKRD26Q9UPS8 1709 aa21.43■■□□□ 1.02
DDX56-202ENST00000415758 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.42■■□□□ 1.02
DDX56-202ENST00000415758 SSFA2P28290 1259 aa21.42■■□□□ 1.02
DDX56-202ENST00000415758 ADCY9O60503 1353 aa21.41■■□□□ 1.02
DDX56-202ENST00000415758 LOC102724428A0A0B4J2F2 783 aa21.41■■□□□ 1.02
DDX56-202ENST00000415758 SIK1P57059 783 aa21.41■■□□□ 1.02
DDX56-202ENST00000415758 EYA1Q99502 592 aa21.4■■□□□ 1.02
DDX56-202ENST00000415758 PPM1GO15355 546 aaPredicted RBP21.38■■□□□ 1.01
DDX56-202ENST00000415758 PHF14O94880 888 aa21.38■■□□□ 1.01
DDX56-202ENST00000415758 LINC00116Q8NCU8 138 aa21.38■■□□□ 1.01
DDX56-202ENST00000415758 GPBP1L1Q9HC44 474 aaPredicted RBP21.38■■□□□ 1.01
DDX56-202ENST00000415758 TMOD3Q9NYL9 352 aa21.38■■□□□ 1.01
DDX56-202ENST00000415758 IGSF1Q8N6C5 1336 aa21.37■■□□□ 1.01
DDX56-202ENST00000415758 SMIM5Q71RC9 77 aa21.37■■□□□ 1.01
DDX56-202ENST00000415758 IFNL2Q8IZJ0 200 aa21.37■■□□□ 1.01
DDX56-202ENST00000415758 PHKG2P15735 406 aa21.36■■□□□ 1.01
DDX56-202ENST00000415758 POLKQ9UBT6 870 aa21.36■■□□□ 1.01
DDX56-202ENST00000415758 ASAP1Q9ULH1 1129 aa21.36■■□□□ 1.01
DDX56-202ENST00000415758 PLEKHG2Q9H7P9 1386 aa21.36■■□□□ 1.01
DDX56-202ENST00000415758 ITPK1Q13572 414 aa21.35■■□□□ 1.01
DDX56-202ENST00000415758 ATP6V1AP38606 617 aa21.34■■□□□ 1.01
DDX56-202ENST00000415758 ATG3Q9NT62 314 aa21.33■■□□□ 1.01
DDX56-202ENST00000415758 GNPATO15228 680 aa21.32■■□□□ 1
DDX56-202ENST00000415758 TIMELESSQ9UNS1 1208 aa21.32■■□□□ 1
DDX56-202ENST00000415758 IFFO2Q5TF58 517 aa21.31■■□□□ 1
DDX56-202ENST00000415758 ZNF831Q5JPB2 1677 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms