RNA–Protein interactions for RNA: ENST00000415548.1

CCT3-208, Transcript of chaperonin containing TCP1 subunit 3, human

TSL 3

Gene CCT3, Length 513 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCT3-208	ENST00000415548	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.48	□□□□□ -0.57
CCT3-208	ENST00000415548	DDX54	Q8TDD1	881 aa	Known RBP	11.47	□□□□□ -0.57
CCT3-208	ENST00000415548	PARD3	Q8TEW0	1356 aa		11.46	□□□□□ -0.57
CCT3-208	ENST00000415548	PER1	O15534	1290 aa	Predicted RBP	11.46	□□□□□ -0.57
CCT3-208	ENST00000415548	KCNQ2	O43526	872 aa		11.46	□□□□□ -0.57
CCT3-208	ENST00000415548	NCBP3	Q53F19	620 aa	Known RBP	11.46	□□□□□ -0.57
CCT3-208	ENST00000415548	ZCRB1	Q8TBF4	217 aa	Known RBP	11.46	□□□□□ -0.57
CCT3-208	ENST00000415548	RAPGEF4	Q8WZA2	1011 aa		11.46	□□□□□ -0.57
CCT3-208	ENST00000415548	ACSBG1	Q96GR2	724 aa		11.46	□□□□□ -0.57
CCT3-208	ENST00000415548	SHANK3	Q9BYB0	1731 aa		11.46	□□□□□ -0.58
CCT3-208	ENST00000415548	TAT	P17735	454 aa	Predicted RBP	11.45	□□□□□ -0.58
CCT3-208	ENST00000415548	CACNB1	Q02641	598 aa	Predicted RBP	11.45	□□□□□ -0.58
CCT3-208	ENST00000415548	EIF4A2	Q14240	407 aa	Known RBP	11.45	□□□□□ -0.58
CCT3-208	ENST00000415548	NHS	Q6T4R5	1651 aa		11.45	□□□□□ -0.58
CCT3-208	ENST00000415548	RREB1	Q92766	1687 aa		11.45	□□□□□ -0.58
CCT3-208	ENST00000415548	KAT6B	Q8WYB5	2073 aa		11.45	□□□□□ -0.58
CCT3-208	ENST00000415548	PSD	A5PKW4	1024 aa	Predicted RBP	11.44	□□□□□ -0.58
CCT3-208	ENST00000415548	CC2D1B	Q5T0F9	858 aa	Known RBP	11.44	□□□□□ -0.58
CCT3-208	ENST00000415548	EYA1	Q99502	592 aa		11.44	□□□□□ -0.58
CCT3-208	ENST00000415548	NCAPD2	Q15021	1401 aa		11.43	□□□□□ -0.58
CCT3-208	ENST00000415548	NUP188	Q5SRE5	1749 aa		11.43	□□□□□ -0.58
CCT3-208	ENST00000415548	PLSCR1	O15162	318 aa		11.43	□□□□□ -0.58
CCT3-208	ENST00000415548	CNGB1	Q14028	1251 aa	Predicted RBP	11.43	□□□□□ -0.58
CCT3-208	ENST00000415548	R3HDM1	Q15032	1099 aa	Known RBP	11.43	□□□□□ -0.58
CCT3-208	ENST00000415548	RGPD3	A6NKT7	1758 aa	Predicted RBP	11.43	□□□□□ -0.58
CCT3-208	ENST00000415548	RGPD4	Q7Z3J3	1758 aa		11.43	□□□□□ -0.58
CCT3-208	ENST00000415548	SRCAP	Q6ZRS2	3230 aa		11.42	□□□□□ -0.58
CCT3-208	ENST00000415548	BTAF1	O14981	1849 aa		11.42	□□□□□ -0.58
CCT3-208	ENST00000415548	PROM2	Q8N271	834 aa		11.41	□□□□□ -0.58
CCT3-208	ENST00000415548	DOT1L	Q8TEK3	1739 aa		11.4	□□□□□ -0.58
CCT3-208	ENST00000415548	IGSF1	Q8N6C5	1336 aa		11.4	□□□□□ -0.58
CCT3-208	ENST00000415548	PCDH11X	Q9BZA7	1347 aa		11.4	□□□□□ -0.58
CCT3-208	ENST00000415548	PCDH11Y	Q9BZA8	1340 aa		11.4	□□□□□ -0.58
CCT3-208	ENST00000415548	CYP27B1	O15528	508 aa		11.4	□□□□□ -0.58
CCT3-208	ENST00000415548	PRIM1	P49642	420 aa	Known RBP	11.4	□□□□□ -0.58
CCT3-208	ENST00000415548	PKD1L3	Q7Z443	1732 aa		11.4	□□□□□ -0.58
CCT3-208	ENST00000415548	NPC1L1	Q9UHC9	1359 aa		11.4	□□□□□ -0.59
CCT3-208	ENST00000415548	MTHFS	P49914	203 aa		11.39	□□□□□ -0.59
CCT3-208	ENST00000415548	TXNRD1	Q16881	649 aa		11.39	□□□□□ -0.59
CCT3-208	ENST00000415548	NBPF14	Q5TI25	921 aa		11.39	□□□□□ -0.59
CCT3-208	ENST00000415548	SYTL4	Q96C24	671 aa	Predicted RBP	11.39	□□□□□ -0.59
CCT3-208	ENST00000415548	AEBP1	Q8IUX7	1158 aa		11.38	□□□□□ -0.59
CCT3-208	ENST00000415548	SPG7	Q9UQ90	795 aa		11.38	□□□□□ -0.59
CCT3-208	ENST00000415548	IL13	P35225	146 aa		11.37	□□□□□ -0.59
CCT3-208	ENST00000415548	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.37	□□□□□ -0.59
CCT3-208	ENST00000415548	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.37	□□□□□ -0.59	1e-10	■■□□□ 12.7
CCT3-208	ENST00000415548	TOGARAM1	Q9Y4F4	1720 aa		11.36	□□□□□ -0.59
CCT3-208	ENST00000415548	RNF39	Q9H2S5	420 aa		11.36	□□□□□ -0.59
CCT3-208	ENST00000415548	NKX1-1	Q15270	411 aa	Predicted RBP	11.35	□□□□□ -0.59
CCT3-208	ENST00000415548	SULT6B1	Q6IMI4	303 aa		11.35	□□□□□ -0.59
CCT3-208	ENST00000415548	PHKG2	P15735	406 aa		11.34	□□□□□ -0.59
CCT3-208	ENST00000415548	MPRIP	Q6WCQ1	1025 aa		11.34	□□□□□ -0.59
CCT3-208	ENST00000415548	IFNL2	Q8IZJ0	200 aa		11.34	□□□□□ -0.59
CCT3-208	ENST00000415548	LRRC4B	Q9NT99	713 aa		11.34	□□□□□ -0.59
CCT3-208	ENST00000415548	STK32B	Q9NY57	414 aa		11.34	□□□□□ -0.59
CCT3-208	ENST00000415548	ITGB4	P16144	1822 aa		11.34	□□□□□ -0.59
CCT3-208	ENST00000415548	COL3A1	P02461	1466 aa	Predicted RBP	11.33	□□□□□ -0.6
CCT3-208	ENST00000415548	KDR	P35968	1356 aa		11.33	□□□□□ -0.6
CCT3-208	ENST00000415548	PLEKHG2	Q9H7P9	1386 aa		11.33	□□□□□ -0.6
CCT3-208	ENST00000415548	DIAPH1	O60610	1272 aa	Known RBP	11.33	□□□□□ -0.6
CCT3-208	ENST00000415548	KCNQ4	P56696	695 aa		11.33	□□□□□ -0.6
CCT3-208	ENST00000415548	PLEKHO1	Q53GL0	409 aa	Predicted RBP	11.33	□□□□□ -0.6
CCT3-208	ENST00000415548	LRP5	O75197	1615 aa		11.33	□□□□□ -0.6
CCT3-208	ENST00000415548	PAPPA	Q13219	1627 aa		11.33	□□□□□ -0.6
CCT3-208	ENST00000415548	LY75	O60449	1722 aa		11.32	□□□□□ -0.6
CCT3-208	ENST00000415548	HMOX1	P09601	288 aa		11.32	□□□□□ -0.6
CCT3-208	ENST00000415548	SLC15A2	Q16348	729 aa		11.32	□□□□□ -0.6
CCT3-208	ENST00000415548	SLC27A3	Q5K4L6	730 aa		11.32	□□□□□ -0.6
CCT3-208	ENST00000415548	ZNF530	Q6P9A1	599 aa	Predicted RBP	11.32	□□□□□ -0.6
CCT3-208	ENST00000415548	PPP2R1A	P30153	589 aa		11.31	□□□□□ -0.6
CCT3-208	ENST00000415548	ZNF827	Q17R98	1081 aa		11.31	□□□□□ -0.6
CCT3-208	ENST00000415548	AMOT	Q4VCS5	1084 aa		11.31	□□□□□ -0.6
CCT3-208	ENST00000415548	PIGB	Q92521	554 aa		11.31	□□□□□ -0.6
CCT3-208	ENST00000415548	PDGFD	Q9GZP0	370 aa	Predicted RBP	11.31	□□□□□ -0.6
CCT3-208	ENST00000415548	CCNL1	Q9UK58	526 aa	Predicted RBP	11.31	□□□□□ -0.6
CCT3-208	ENST00000415548	CASZ1	Q86V15	1759 aa		11.31	□□□□□ -0.6
CCT3-208	ENST00000415548	U2SURP	O15042	1029 aa	Known RBP	11.3	□□□□□ -0.6
CCT3-208	ENST00000415548	TMOD3	Q9NYL9	352 aa		11.3	□□□□□ -0.6
CCT3-208	ENST00000415548	PALLD	Q8WX93	1383 aa		11.29	□□□□□ -0.6
CCT3-208	ENST00000415548	KDM6A	O15550	1401 aa	Predicted RBP	11.29	□□□□□ -0.6
CCT3-208	ENST00000415548	HSP90AB1	P08238	724 aa	Known RBP	11.29	□□□□□ -0.6
CCT3-208	ENST00000415548	DDX10	Q13206	875 aa	Known RBP	11.29	□□□□□ -0.6
CCT3-208	ENST00000415548	C1orf141	Q5JVX7	400 aa		11.29	□□□□□ -0.6
CCT3-208	ENST00000415548	AKT1S1	Q96B36	256 aa		11.29	□□□□□ -0.6
CCT3-208	ENST00000415548	CFAP53	Q96M91	514 aa		11.29	□□□□□ -0.6
CCT3-208	ENST00000415548	ZEB1	P37275	1124 aa	Predicted RBP	11.28	□□□□□ -0.6
CCT3-208	ENST00000415548	SMARCC1	Q92922	1105 aa	Predicted RBP	11.28	□□□□□ -0.6
CCT3-208	ENST00000415548	DCAF5	Q96JK2	942 aa		11.28	□□□□□ -0.6
CCT3-208	ENST00000415548	ERVV-2	B6SEH9	535 aa		11.27	□□□□□ -0.61
CCT3-208	ENST00000415548	ZBTB7A	O95365	584 aa		11.27	□□□□□ -0.61
CCT3-208	ENST00000415548	SPON1	Q9HCB6	807 aa		11.27	□□□□□ -0.61
CCT3-208	ENST00000415548	ASAP1	Q9ULH1	1129 aa		11.27	□□□□□ -0.61
CCT3-208	ENST00000415548	TUBGCP6	Q96RT7	1819 aa		11.26	□□□□□ -0.61
CCT3-208	ENST00000415548	CABP4	P57796	275 aa		11.26	□□□□□ -0.61
CCT3-208	ENST00000415548	MTHFSD	Q2M296	383 aa	Known RBP	11.26	□□□□□ -0.61
CCT3-208	ENST00000415548	AKAP4	Q5JQC9	854 aa		11.26	□□□□□ -0.61
CCT3-208	ENST00000415548	ATG3	Q9NT62	314 aa		11.26	□□□□□ -0.61
CCT3-208	ENST00000415548	TFCP2L1	Q9NZI6	479 aa		11.26	□□□□□ -0.61
CCT3-208	ENST00000415548	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.26	□□□□□ -0.61
CCT3-208	ENST00000415548	C5	P01031	1676 aa		11.26	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms