RNA–Protein interactions for RNA: ENST00000413593.5

TMEM248-202, Transcript of transmembrane protein 248, humanhuman

TSL 4

Gene TMEM248, Length 637 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-202ENST00000413593 APBA3O96018 575 aa13.7□□□□□ -0.22
TMEM248-202ENST00000413593 EN1Q05925 392 aaPredicted RBP13.7□□□□□ -0.22
TMEM248-202ENST00000413593 RGPD1P0DJD0 1748 aa13.7□□□□□ -0.22
TMEM248-202ENST00000413593 TATP17735 454 aaPredicted RBP13.69□□□□□ -0.22
TMEM248-202ENST00000413593 PTF1AQ7RTS3 328 aa13.69□□□□□ -0.22
TMEM248-202ENST00000413593 ZCRB1Q8TBF4 217 aaKnown RBP13.69□□□□□ -0.22
TMEM248-202ENST00000413593 DDX54Q8TDD1 881 aaKnown RBP13.69□□□□□ -0.22
TMEM248-202ENST00000413593 BCL11BQ9C0K0 894 aaPredicted RBP13.69□□□□□ -0.22
TMEM248-202ENST00000413593 TNS1Q9HBL0 1735 aaKnown RBP13.69□□□□□ -0.22
TMEM248-202ENST00000413593 MTHFSP49914 203 aa13.68□□□□□ -0.22
TMEM248-202ENST00000413593 CNGB1Q14028 1251 aaPredicted RBP13.68□□□□□ -0.22
TMEM248-202ENST00000413593 CAMKK2Q96RR4 588 aa13.68□□□□□ -0.22
TMEM248-202ENST00000413593 MAP2P11137 1827 aaKnown RBP13.68□□□□□ -0.22
TMEM248-202ENST00000413593 RGPD2P0DJD1 1756 aa13.68□□□□□ -0.22
TMEM248-202ENST00000413593 IGSF1Q8N6C5 1336 aa13.67□□□□□ -0.22
TMEM248-202ENST00000413593 KCNQ2O43526 872 aa13.66□□□□□ -0.22
TMEM248-202ENST00000413593 EZH2Q15910 746 aaKnown RBP13.66□□□□□ -0.22
TMEM248-202ENST00000413593 PARD3Q8TEW0 1356 aa13.66□□□□□ -0.22
TMEM248-202ENST00000413593 DCAF8L1A6NGE4 600 aa13.65□□□□□ -0.22
TMEM248-202ENST00000413593 IL13P35225 146 aa13.65□□□□□ -0.22
TMEM248-202ENST00000413593 ACSBG1Q96GR2 724 aa13.65□□□□□ -0.22
TMEM248-202ENST00000413593 PCDH11XQ9BZA7 1347 aa13.64□□□□□ -0.23
TMEM248-202ENST00000413593 PCDH11YQ9BZA8 1340 aa13.64□□□□□ -0.23
TMEM248-202ENST00000413593 PLEKHG2Q9H7P9 1386 aa13.63□□□□□ -0.23
TMEM248-202ENST00000413593 PLSCR1O15162 318 aa13.63□□□□□ -0.23
TMEM248-202ENST00000413593 CYP27B1O15528 508 aa13.63□□□□□ -0.23
TMEM248-202ENST00000413593 AEBP1Q8IUX7 1158 aa13.63□□□□□ -0.23
TMEM248-202ENST00000413593 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.63□□□□□ -0.23
TMEM248-202ENST00000413593 SPG7Q9UQ90 795 aa13.62□□□□□ -0.23
TMEM248-202ENST00000413593 SHANK3Q9BYB0 1731 aa13.61□□□□□ -0.23
TMEM248-202ENST00000413593 KDRP35968 1356 aa13.61□□□□□ -0.23
TMEM248-202ENST00000413593 NHSQ6T4R5 1651 aa13.61□□□□□ -0.23
TMEM248-202ENST00000413593 DIAPH1O60610 1272 aaKnown RBP13.61□□□□□ -0.23
TMEM248-202ENST00000413593 SBF2Q86WG5 1849 aa13.61□□□□□ -0.23
TMEM248-202ENST00000413593 COL3A1P02461 1466 aaPredicted RBP13.61□□□□□ -0.23
TMEM248-202ENST00000413593 PPP2R1AP30153 589 aa13.6□□□□□ -0.23
TMEM248-202ENST00000413593 PRIM1P49642 420 aaKnown RBP13.6□□□□□ -0.23
TMEM248-202ENST00000413593 DDX10Q13206 875 aaKnown RBP13.6□□□□□ -0.23
TMEM248-202ENST00000413593 SULT6B1Q6IMI4 303 aa13.6□□□□□ -0.23
TMEM248-202ENST00000413593 PKD1L3Q7Z443 1732 aa13.59□□□□□ -0.23
TMEM248-202ENST00000413593 NKX1-1Q15270 411 aaPredicted RBP13.59□□□□□ -0.23
TMEM248-202ENST00000413593 PROM2Q8N271 834 aa13.59□□□□□ -0.23
TMEM248-202ENST00000413593 SYTL4Q96C24 671 aaPredicted RBP13.59□□□□□ -0.23
TMEM248-202ENST00000413593 PHKG2P15735 406 aa13.58□□□□□ -0.24
TMEM248-202ENST00000413593 TXNRD1Q16881 649 aa13.58□□□□□ -0.24
TMEM248-202ENST00000413593 PLEKHO1Q53GL0 409 aaPredicted RBP13.58□□□□□ -0.24
TMEM248-202ENST00000413593 IFNL2Q8IZJ0 200 aa13.58□□□□□ -0.24
TMEM248-202ENST00000413593 RREB1Q92766 1687 aa13.57□□□□□ -0.24
TMEM248-202ENST00000413593 AMOTQ4VCS5 1084 aa13.57□□□□□ -0.24
TMEM248-202ENST00000413593 CFAP53Q96M91 514 aa13.57□□□□□ -0.24
TMEM248-202ENST00000413593 RGPD3A6NKT7 1758 aaPredicted RBP13.57□□□□□ -0.24
TMEM248-202ENST00000413593 RGPD4Q7Z3J3 1758 aa13.57□□□□□ -0.24
TMEM248-202ENST00000413593 PSDA5PKW4 1024 aaPredicted RBP13.56□□□□□ -0.24
TMEM248-202ENST00000413593 HMOX1P09601 288 aa13.56□□□□□ -0.24
TMEM248-202ENST00000413593 NBPF14Q5TI25 921 aa13.56□□□□□ -0.24
TMEM248-202ENST00000413593 DOT1LQ8TEK3 1739 aa13.56□□□□□ -0.24
TMEM248-202ENST00000413593 U2SURPO15042 1029 aaKnown RBP13.55□□□□□ -0.24
TMEM248-202ENST00000413593 R3HDM1Q15032 1099 aaKnown RBP13.55□□□□□ -0.24
TMEM248-202ENST00000413593 ZNF530Q6P9A1 599 aaPredicted RBP13.55□□□□□ -0.24
TMEM248-202ENST00000413593 NUP188Q5SRE5 1749 aa13.54□□□□□ -0.24
TMEM248-202ENST00000413593 ANO8Q9HCE9 1232 aaPredicted RBP13.54□□□□□ -0.24
TMEM248-202ENST00000413593 BTAF1O14981 1849 aa13.53□□□□□ -0.24
TMEM248-202ENST00000413593 RALBP1Q15311 655 aa13.53□□□□□ -0.24
TMEM248-202ENST00000413593 MPRIPQ6WCQ1 1025 aa13.53□□□□□ -0.24
TMEM248-202ENST00000413593 HSP90AB1P08238 724 aaKnown RBP13.52□□□□□ -0.25
TMEM248-202ENST00000413593 PIGBQ92521 554 aa13.52□□□□□ -0.25
TMEM248-202ENST00000413593 DCAF5Q96JK2 942 aa13.52□□□□□ -0.25
TMEM248-202ENST00000413593 LRRC4BQ9NT99 713 aa13.52□□□□□ -0.25
TMEM248-202ENST00000413593 NUDCQ9Y266 331 aa13.52□□□□□ -0.25
TMEM248-202ENST00000413593 TOGARAM1Q9Y4F4 1720 aa13.52□□□□□ -0.25
TMEM248-202ENST00000413593 KDM6AO15550 1401 aaPredicted RBP13.51□□□□□ -0.25
TMEM248-202ENST00000413593 C1orf141Q5JVX7 400 aa13.51□□□□□ -0.25
TMEM248-202ENST00000413593 SLC27A3Q5K4L6 730 aa13.51□□□□□ -0.25
TMEM248-202ENST00000413593 PALLDQ8WX93 1383 aa13.5□□□□□ -0.25
TMEM248-202ENST00000413593 ZNF316A6NFI3 1004 aaPredicted RBP13.5□□□□□ -0.25
TMEM248-202ENST00000413593 ERVV-2B6SEH9 535 aa13.5□□□□□ -0.25
TMEM248-202ENST00000413593 MTHFSDQ2M296 383 aaKnown RBP13.5□□□□□ -0.25
TMEM248-202ENST00000413593 STK32BQ9NY57 414 aa13.5□□□□□ -0.25
TMEM248-202ENST00000413593 TMOD3Q9NYL9 352 aa13.5□□□□□ -0.25
TMEM248-202ENST00000413593 U2AF1L5P0DN76 240 aaPredicted RBP13.49□□□□□ -0.25
TMEM248-202ENST00000413593 KCNQ4P56696 695 aa13.49□□□□□ -0.25
TMEM248-202ENST00000413593 U2AF1Q01081 240 aaKnown RBP eCLIP13.49□□□□□ -0.25
TMEM248-202ENST00000413593 SLC15A2Q16348 729 aa13.49□□□□□ -0.25
TMEM248-202ENST00000413593 AKAP4Q5JQC9 854 aa13.49□□□□□ -0.25
TMEM248-202ENST00000413593 SMARCC1Q92922 1105 aaPredicted RBP13.49□□□□□ -0.25
TMEM248-202ENST00000413593 RSPH6AQ9H0K4 717 aa13.49□□□□□ -0.25
TMEM248-202ENST00000413593 CCNL1Q9UK58 526 aaPredicted RBP13.49□□□□□ -0.25
TMEM248-202ENST00000413593 PRKAR2BP31323 418 aa13.48□□□□□ -0.25
TMEM248-202ENST00000413593 PAPPAQ13219 1627 aa13.48□□□□□ -0.25
TMEM248-202ENST00000413593 MYBBP1AQ9BQG0 1328 aaKnown RBP13.47□□□□□ -0.25
TMEM248-202ENST00000413593 ZNF827Q17R98 1081 aa13.47□□□□□ -0.25
TMEM248-202ENST00000413593 ASAP1Q9ULH1 1129 aa13.47□□□□□ -0.25
TMEM248-202ENST00000413593 FCHSD2O94868 740 aa13.46□□□□□ -0.25
TMEM248-202ENST00000413593 CABP4P57796 275 aa13.46□□□□□ -0.25
TMEM248-202ENST00000413593 GAS2L2Q8NHY3 880 aa13.46□□□□□ -0.25
TMEM248-202ENST00000413593 AKT1S1Q96B36 256 aa13.46□□□□□ -0.25
TMEM248-202ENST00000413593 PHACTR3Q96KR7 559 aa13.46□□□□□ -0.25
TMEM248-202ENST00000413593 PRKRIP1Q9H875 184 aaPredicted RBP13.46□□□□□ -0.25
TMEM248-202ENST00000413593 ATG3Q9NT62 314 aa13.46□□□□□ -0.25
TMEM248-202ENST00000413593 KAT6BQ8WYB5 2073 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms