RNA–Protein interactions for RNA: ENST00000413593.5

TMEM248-202, Transcript of transmembrane protein 248, humanhuman

TSL 4

Gene TMEM248, Length 637 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-202ENST00000413593 NISCHQ9Y2I1 1504 aa24.54■■□□□ 1.52
TMEM248-202ENST00000413593 CCDC180Q9P1Z9 1646 aa21.77■■□□□ 1.08
TMEM248-202ENST00000413593 ABCC9O60706 1549 aa21.39■■□□□ 1.01
TMEM248-202ENST00000413593 AEBP2Q6ZN18 517 aaPredicted RBP20.91■□□□□ 0.94
TMEM248-202ENST00000413593 RB1CC1Q8TDY2 1594 aa20.53■□□□□ 0.88
TMEM248-202ENST00000413593 NACADO15069 1562 aa20.51■□□□□ 0.87
TMEM248-202ENST00000413593 DCAF8L2P0C7V8 631 aa20.51■□□□□ 0.87
TMEM248-202ENST00000413593 ZCCHC6Q5VYS8 1495 aaKnown RBP20.44■□□□□ 0.86
TMEM248-202ENST00000413593 MYO15BQ96JP2 1530 aa20.41■□□□□ 0.86
TMEM248-202ENST00000413593 CHIC1Q5VXU3 224 aa20.37■□□□□ 0.85
TMEM248-202ENST00000413593 DCAF1Q9Y4B6 1507 aa20.3■□□□□ 0.84
TMEM248-202ENST00000413593 PABPN1Q86U42 306 aaKnown RBP eCLIP19.99■□□□□ 0.79
TMEM248-202ENST00000413593 UNC13AQ9UPW8 1703 aa19.98■□□□□ 0.79
TMEM248-202ENST00000413593 BICRAQ9NZM4 1560 aa19.92■□□□□ 0.78
TMEM248-202ENST00000413593 SCRIBQ14160 1630 aa19.88■□□□□ 0.77
TMEM248-202ENST00000413593 SHROOM4Q9ULL8 1493 aa19.73■□□□□ 0.75
TMEM248-202ENST00000413593 DNAJC5BQ9UF47 199 aa19.68■□□□□ 0.74
TMEM248-202ENST00000413593 EIF4G1Q04637 1599 aaKnown RBP19.4■□□□□ 0.7
TMEM248-202ENST00000413593 CC2D2AQ9P2K1 1620 aa19.32■□□□□ 0.68
TMEM248-202ENST00000413593 CECR2Q9BXF3 1484 aa19.22■□□□□ 0.67
TMEM248-202ENST00000413593 SMARCA4P51532 1647 aa19.02■□□□□ 0.64
TMEM248-202ENST00000413593 BAZ1AQ9NRL2 1556 aaPredicted RBP19.01■□□□□ 0.63
TMEM248-202ENST00000413593 ATAD2BQ9ULI0 1458 aa18.97■□□□□ 0.63
TMEM248-202ENST00000413593 NCAPD3P42695 1498 aa18.96■□□□□ 0.63
TMEM248-202ENST00000413593 SMARCA2P51531 1590 aa18.91■□□□□ 0.62
TMEM248-202ENST00000413593 MROH2BQ7Z745 1585 aa18.91■□□□□ 0.62
TMEM248-202ENST00000413593 PEG3Q9GZU2 1588 aa18.85■□□□□ 0.61
TMEM248-202ENST00000413593 HMGXB3Q12766 1538 aa18.84■□□□□ 0.61
TMEM248-202ENST00000413593 BAZ1BQ9UIG0 1483 aaKnown RBP18.79■□□□□ 0.6
TMEM248-202ENST00000413593 RSF1Q96T23 1441 aaPredicted RBP18.7■□□□□ 0.58
TMEM248-202ENST00000413593 WIZO95785 1651 aa18.66■□□□□ 0.58
TMEM248-202ENST00000413593 TOP2AP11388 1531 aaKnown RBP18.49■□□□□ 0.55
TMEM248-202ENST00000413593 NESP48681 1621 aa18.49■□□□□ 0.55
TMEM248-202ENST00000413593 ERCC6Q03468 1493 aa18.43■□□□□ 0.54
TMEM248-202ENST00000413593 LAMC3Q9Y6N6 1575 aa18.42■□□□□ 0.54
TMEM248-202ENST00000413593 CADPSQ9ULU8 1353 aa18.41■□□□□ 0.54
TMEM248-202ENST00000413593 PDS5BQ9NTI5 1447 aa18.33■□□□□ 0.53
TMEM248-202ENST00000413593 CCDC88BA6NC98 1476 aa18.29■□□□□ 0.52
TMEM248-202ENST00000413593 CFTRP13569 1480 aa18.29■□□□□ 0.52
TMEM248-202ENST00000413593 CUX2O14529 1486 aa18.25■□□□□ 0.51
TMEM248-202ENST00000413593 KIF21AQ7Z4S6 1674 aa18.21■□□□□ 0.51
TMEM248-202ENST00000413593 SUPT5HO00267 1087 aaKnown RBP18.2■□□□□ 0.5
TMEM248-202ENST00000413593 THOC2Q8NI27 1593 aaKnown RBP18.2■□□□□ 0.5
TMEM248-202ENST00000413593 FANCD2Q9BXW9 1451 aa18.18■□□□□ 0.5
TMEM248-202ENST00000413593 CEP164Q9UPV0 1460 aa18.15■□□□□ 0.5
TMEM248-202ENST00000413593 MRC2Q9UBG0 1479 aa18.14■□□□□ 0.5
TMEM248-202ENST00000413593 WDR62O43379 1518 aa18.08■□□□□ 0.48
TMEM248-202ENST00000413593 PRDM2Q13029 1718 aa18.01■□□□□ 0.47
TMEM248-202ENST00000413593 URB2Q14146 1524 aaKnown RBP18.01■□□□□ 0.47
TMEM248-202ENST00000413593 SENP3Q9H4L4 574 aaPredicted RBP17.96■□□□□ 0.47
TMEM248-202ENST00000413593 TOPBP1Q92547 1522 aa17.88■□□□□ 0.45
TMEM248-202ENST00000413593 ABCC8Q09428 1581 aa17.87■□□□□ 0.45
TMEM248-202ENST00000413593 DNMBPQ6XZF7 1577 aa17.85■□□□□ 0.45
TMEM248-202ENST00000413593 IFT140Q96RY7 1462 aa17.78■□□□□ 0.44
TMEM248-202ENST00000413593 PHF23Q9BUL5 403 aaPredicted RBP17.78■□□□□ 0.44
TMEM248-202ENST00000413593 CUX1P39880 1505 aa17.74■□□□□ 0.43
TMEM248-202ENST00000413593 DNAJC5Q9H3Z4 198 aa17.74■□□□□ 0.43
TMEM248-202ENST00000413593 POLA1P09884 1462 aaPredicted RBP17.74■□□□□ 0.43
TMEM248-202ENST00000413593 ZNF608Q9ULD9 1512 aaPredicted RBP17.72■□□□□ 0.43
TMEM248-202ENST00000413593 FGD5Q6ZNL6 1462 aa17.69■□□□□ 0.42
TMEM248-202ENST00000413593 TARBP1Q13395 1621 aaKnown RBP17.67■□□□□ 0.42
TMEM248-202ENST00000413593 RAD54L2Q9Y4B4 1467 aa17.67■□□□□ 0.42
TMEM248-202ENST00000413593 SOGA1O94964 1423 aa17.66■□□□□ 0.42
TMEM248-202ENST00000413593 WRNQ14191 1432 aaPredicted RBP eCLIP17.63■□□□□ 0.41
TMEM248-202ENST00000413593 AQRO60306 1485 aaKnown RBP eCLIP17.61■□□□□ 0.414e-6■■□□□ 13.1
TMEM248-202ENST00000413593 EIF4G3O43432 1585 aaKnown RBP17.61■□□□□ 0.41
TMEM248-202ENST00000413593 TDRD9Q8NDG6 1382 aaKnown RBP17.58■□□□□ 0.4
TMEM248-202ENST00000413593 TOP2BQ02880 1626 aa17.56■□□□□ 0.4
TMEM248-202ENST00000413593 SYNJ1O43426 1573 aa17.56■□□□□ 0.4
TMEM248-202ENST00000413593 BIVM-ERCC5R4GMW8 1640 aa17.54■□□□□ 0.4
TMEM248-202ENST00000413593 ABCA10Q8WWZ4 1543 aa17.52■□□□□ 0.4
TMEM248-202ENST00000413593 WDR97A6NE52 1622 aa17.52■□□□□ 0.4
TMEM248-202ENST00000413593 OSCARQ8IYS5 282 aa17.5■□□□□ 0.39
TMEM248-202ENST00000413593 GRIN2BQ13224 1484 aa17.46■□□□□ 0.39
TMEM248-202ENST00000413593 GAPVD1Q14C86 1478 aa17.45■□□□□ 0.38
TMEM248-202ENST00000413593 SNAPC4Q5SXM2 1469 aa17.44■□□□□ 0.38
TMEM248-202ENST00000413593 ABCA5Q8WWZ7 1642 aa17.43■□□□□ 0.38
TMEM248-202ENST00000413593 MAGI1Q96QZ7 1491 aaPredicted RBP17.41■□□□□ 0.38
TMEM248-202ENST00000413593 FBLN2P98095 1184 aa17.4■□□□□ 0.38
TMEM248-202ENST00000413593 CHMP7Q8WUX9 453 aaPredicted RBP17.35■□□□□ 0.37
TMEM248-202ENST00000413593 SYNJ2O15056 1496 aa17.35■□□□□ 0.37
TMEM248-202ENST00000413593 CHD1O14646 1710 aa17.34■□□□□ 0.37
TMEM248-202ENST00000413593 PBRM1Q86U86 1689 aa17.34■□□□□ 0.37
TMEM248-202ENST00000413593 ERICH3Q5RHP9 1530 aa17.3■□□□□ 0.36
TMEM248-202ENST00000413593 ADAMTS12P58397 1594 aa17.27■□□□□ 0.35
TMEM248-202ENST00000413593 FHAD1B1AJZ9 1412 aa17.26■□□□□ 0.35
TMEM248-202ENST00000413593 KIF27Q86VH2 1401 aa17.26■□□□□ 0.35
TMEM248-202ENST00000413593 GRIN2AQ12879 1464 aa17.24■□□□□ 0.35
TMEM248-202ENST00000413593 CLASP1Q7Z460 1538 aa17.22■□□□□ 0.35
TMEM248-202ENST00000413593 IGF1RP08069 1367 aa17.21■□□□□ 0.35
TMEM248-202ENST00000413593 ARHGEF11O15085 1522 aa17.21■□□□□ 0.34
TMEM248-202ENST00000413593 TRIM41Q8WV44 630 aa17.19■□□□□ 0.34
TMEM248-202ENST00000413593 RIMBP3CA6NJZ7 1639 aa17.18■□□□□ 0.34
TMEM248-202ENST00000413593 RIMBP3BA6NNM3 1639 aa17.18■□□□□ 0.34
TMEM248-202ENST00000413593 RIMBP3Q9UFD9 1639 aa17.18■□□□□ 0.34
TMEM248-202ENST00000413593 NUP160Q12769 1436 aa17.17■□□□□ 0.34
TMEM248-202ENST00000413593 CEP170Q5SW79 1584 aa17.13■□□□□ 0.33
TMEM248-202ENST00000413593 CARMIL1Q5VZK9 1371 aa17.1■□□□□ 0.33
TMEM248-202ENST00000413593 CUL7Q14999 1698 aa17.1■□□□□ 0.33
TMEM248-202ENST00000413593 RUSC2Q8N2Y8 1516 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 169.7 ms