RNA–Protein interactions for RNA: ENST00000413578.5

LIMS2-210, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 3

Gene LIMS2, Length 930 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-210ENST00000413578 SHANK3Q9BYB0 1731 aa17.17■□□□□ 0.34
LIMS2-210ENST00000413578 SLC24A1O60721 1099 aa17.16■□□□□ 0.34
LIMS2-210ENST00000413578 AMPHP49418 695 aa17.16■□□□□ 0.34
LIMS2-210ENST00000413578 NBPF6Q5VWK0 638 aa17.15■□□□□ 0.34
LIMS2-210ENST00000413578 SYTL4Q96C24 671 aaPredicted RBP17.15■□□□□ 0.34
LIMS2-210ENST00000413578 NBPF4Q96M43 638 aa17.15■□□□□ 0.34
LIMS2-210ENST00000413578 TFCP2L1Q9NZI6 479 aa17.15■□□□□ 0.34
LIMS2-210ENST00000413578 LY75O60449 1722 aa17.15■□□□□ 0.34
LIMS2-210ENST00000413578 DOT1LQ8TEK3 1739 aa17.15■□□□□ 0.34
LIMS2-210ENST00000413578 FYB1O15117 783 aa17.14■□□□□ 0.33
LIMS2-210ENST00000413578 POLD1P28340 1107 aa17.14■□□□□ 0.33
LIMS2-210ENST00000413578 RRS1Q15050 365 aaKnown RBP17.14■□□□□ 0.33
LIMS2-210ENST00000413578 CGNL1Q0VF96 1302 aa17.14■□□□□ 0.33
LIMS2-210ENST00000413578 TUBGCP6Q96RT7 1819 aa17.13■□□□□ 0.33
LIMS2-210ENST00000413578 GOLGB1Q14789 3259 aaKnown RBP17.13■□□□□ 0.33
LIMS2-210ENST00000413578 C1QTNF8P60827 252 aa17.12■□□□□ 0.33
LIMS2-210ENST00000413578 GPR162Q16538 588 aa17.12■□□□□ 0.33
LIMS2-210ENST00000413578 NLGN2Q8NFZ4 835 aa17.12■□□□□ 0.33
LIMS2-210ENST00000413578 CCNL1Q9UK58 526 aaPredicted RBP17.12■□□□□ 0.33
LIMS2-210ENST00000413578 CHD4Q14839 1912 aa17.11■□□□□ 0.33
LIMS2-210ENST00000413578 RGPD2P0DJD1 1756 aa17.1■□□□□ 0.33
LIMS2-210ENST00000413578 COL23A1Q86Y22 540 aaPredicted RBP17.1■□□□□ 0.33
LIMS2-210ENST00000413578 USHBP1Q8N6Y0 703 aa17.1■□□□□ 0.33
LIMS2-210ENST00000413578 GGNBP2Q9H3C7 697 aa17.1■□□□□ 0.33
LIMS2-210ENST00000413578 INSRP06213 1382 aa17.1■□□□□ 0.33
LIMS2-210ENST00000413578 USP47Q96K76 1375 aa17.1■□□□□ 0.33
LIMS2-210ENST00000413578 KAT6BQ8WYB5 2073 aa17.09■□□□□ 0.33
LIMS2-210ENST00000413578 KIF24Q5T7B8 1368 aa17.09■□□□□ 0.33
LIMS2-210ENST00000413578 SMG6Q86US8 1419 aaKnown RBP17.08■□□□□ 0.32
LIMS2-210ENST00000413578 HSP90AB2PQ58FF8 381 aa17.08■□□□□ 0.32
LIMS2-210ENST00000413578 KLHL34Q8N239 644 aa17.08■□□□□ 0.32
LIMS2-210ENST00000413578 YBX3P16989 372 aaKnown RBP eCLIP17.07■□□□□ 0.32
LIMS2-210ENST00000413578 RAPGEF4Q8WZA2 1011 aa17.07■□□□□ 0.32
LIMS2-210ENST00000413578 NCAPD2Q15021 1401 aa17.06■□□□□ 0.32
LIMS2-210ENST00000413578 FLT4P35916 1363 aa17.06■□□□□ 0.32
LIMS2-210ENST00000413578 PCDH11XQ9BZA7 1347 aa17.06■□□□□ 0.32
LIMS2-210ENST00000413578 PCDH11YQ9BZA8 1340 aa17.06■□□□□ 0.32
LIMS2-210ENST00000413578 CYP27B1O15528 508 aa17.06■□□□□ 0.32
LIMS2-210ENST00000413578 TATP17735 454 aaPredicted RBP17.06■□□□□ 0.32
LIMS2-210ENST00000413578 TMF1P82094 1093 aa17.06■□□□□ 0.32
LIMS2-210ENST00000413578 PALLDQ8WX93 1383 aa17.05■□□□□ 0.32
LIMS2-210ENST00000413578 SENP3-EIF4A1A0A087X0R7 540 aa17.05■□□□□ 0.32
LIMS2-210ENST00000413578 GRIN3BO60391 1043 aa17.03■□□□□ 0.32
LIMS2-210ENST00000413578 MSL1Q68DK7 614 aa17.03■□□□□ 0.32
LIMS2-210ENST00000413578 PELP1Q8IZL8 1130 aaKnown RBP17.03■□□□□ 0.32
LIMS2-210ENST00000413578 CARD14Q9BXL6 1004 aa17.03■□□□□ 0.32
LIMS2-210ENST00000413578 C5P01031 1676 aa17.02■□□□□ 0.32
LIMS2-210ENST00000413578 AMIGO3Q86WK7 504 aa17.02■□□□□ 0.32
LIMS2-210ENST00000413578 MSH5O43196 834 aa17.01■□□□□ 0.31
LIMS2-210ENST00000413578 GIGYF1O75420 1035 aaPredicted RBP17.01■□□□□ 0.31
LIMS2-210ENST00000413578 NKX1-1Q15270 411 aaPredicted RBP17.01■□□□□ 0.31
LIMS2-210ENST00000413578 FLAD1Q8NFF5 587 aa17.01■□□□□ 0.31
LIMS2-210ENST00000413578 CD2APQ9Y5K6 639 aa17.01■□□□□ 0.31
LIMS2-210ENST00000413578 EMILIN1Q9Y6C2 1016 aa17.01■□□□□ 0.31
LIMS2-210ENST00000413578 HMGB2P26583 209 aaKnown RBP17■□□□□ 0.31
LIMS2-210ENST00000413578 MPRIPQ6WCQ1 1025 aa17■□□□□ 0.31
LIMS2-210ENST00000413578 TOGARAM1Q9Y4F4 1720 aa17■□□□□ 0.31
LIMS2-210ENST00000413578 PKD1L3Q7Z443 1732 aa16.99■□□□□ 0.31
LIMS2-210ENST00000413578 CDCA8Q53HL2 280 aa16.99■□□□□ 0.31
LIMS2-210ENST00000413578 PIGBQ92521 554 aa16.99■□□□□ 0.31
LIMS2-210ENST00000413578 NSD3Q9BZ95 1437 aa16.98■□□□□ 0.31
LIMS2-210ENST00000413578 SMARCC1Q92922 1105 aaPredicted RBP16.98■□□□□ 0.31
LIMS2-210ENST00000413578 KIF20BQ96Q89 1820 aa16.98■□□□□ 0.31
LIMS2-210ENST00000413578 C4BP0C0L5 1744 aa16.97■□□□□ 0.31
LIMS2-210ENST00000413578 TAF1LQ8IZX4 1826 aa16.97■□□□□ 0.31
LIMS2-210ENST00000413578 ADCY9O60503 1353 aa16.97■□□□□ 0.31
LIMS2-210ENST00000413578 WASHC2AQ641Q2 1341 aa16.96■□□□□ 0.31
LIMS2-210ENST00000413578 ANKRD26Q9UPS8 1709 aa16.96■□□□□ 0.3
LIMS2-210ENST00000413578 ATP10DQ9P241 1426 aa16.96■□□□□ 0.3
LIMS2-210ENST00000413578 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.95■□□□□ 0.3
LIMS2-210ENST00000413578 MAP2P11137 1827 aaKnown RBP16.94■□□□□ 0.3
LIMS2-210ENST00000413578 SSFA2P28290 1259 aa16.94■□□□□ 0.3
LIMS2-210ENST00000413578 SMIM5Q71RC9 77 aa16.94■□□□□ 0.3
LIMS2-210ENST00000413578 AK7Q96M32 723 aa16.94■□□□□ 0.3
LIMS2-210ENST00000413578 EYA1Q99502 592 aa16.94■□□□□ 0.3
LIMS2-210ENST00000413578 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.93■□□□□ 0.3
LIMS2-210ENST00000413578 LOC102724428A0A0B4J2F2 783 aa16.93■□□□□ 0.3
LIMS2-210ENST00000413578 SIK1P57059 783 aa16.93■□□□□ 0.3
LIMS2-210ENST00000413578 LINC00116Q8NCU8 138 aa16.93■□□□□ 0.3
LIMS2-210ENST00000413578 SPG7Q9UQ90 795 aa16.93■□□□□ 0.3
LIMS2-210ENST00000413578 PLEKHG2Q9H7P9 1386 aa16.92■□□□□ 0.3
LIMS2-210ENST00000413578 ITGB4P16144 1822 aa16.92■□□□□ 0.3
LIMS2-210ENST00000413578 POLKQ9UBT6 870 aa16.92■□□□□ 0.3
LIMS2-210ENST00000413578 CEP350Q5VT06 3117 aa16.92■□□□□ 0.3
LIMS2-210ENST00000413578 UBR3Q6ZT12 1888 aa16.92■□□□□ 0.3
LIMS2-210ENST00000413578 PHF14O94880 888 aa16.91■□□□□ 0.3
LIMS2-210ENST00000413578 PHKG2P15735 406 aa16.91■□□□□ 0.3
LIMS2-210ENST00000413578 ITPK1Q13572 414 aa16.91■□□□□ 0.3
LIMS2-210ENST00000413578 ASAP1Q9ULH1 1129 aa16.9■□□□□ 0.3
LIMS2-210ENST00000413578 IGSF1Q8N6C5 1336 aa16.9■□□□□ 0.3
LIMS2-210ENST00000413578 KDRP35968 1356 aa16.89■□□□□ 0.3
LIMS2-210ENST00000413578 PPM1GO15355 546 aaPredicted RBP16.89■□□□□ 0.29
LIMS2-210ENST00000413578 TMOD3Q9NYL9 352 aa16.89■□□□□ 0.29
LIMS2-210ENST00000413578 IFNL2Q8IZJ0 200 aa16.88■□□□□ 0.29
LIMS2-210ENST00000413578 GNPATO15228 680 aa16.87■□□□□ 0.29
LIMS2-210ENST00000413578 EIF4A2Q14240 407 aaKnown RBP16.87■□□□□ 0.29
LIMS2-210ENST00000413578 GPBP1L1Q9HC44 474 aaPredicted RBP16.87■□□□□ 0.29
LIMS2-210ENST00000413578 ATG3Q9NT62 314 aa16.87■□□□□ 0.29
LIMS2-210ENST00000413578 ATP6V1AP38606 617 aa16.86■□□□□ 0.29
LIMS2-210ENST00000413578 SLC4A9Q96Q91 983 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms